IVF0023051 (gene) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTGAAAAAGACGTTTCAGGCCATTGTGGAGATGAGGGGCCCAGTAGGTAGTGGCTTCGACTGGAACGATGTCATCAAGTGCATCATCACCGAGAGGGACGTGTTCGATCATTGGGTCCGAGTAAGAGTATGAACATAATTATATGACTAACTGGATTTTATGGAATACTAATTGCTTTGTTATTTTTTTGTGTTTTTTTTCAGACGCACCCTACAGCAAAAGGATTCCTGAACAAGCCATTCCCGCATTACGATACATTGTCGTACGTGTTCGGGAAATATCGAGCTACTGGGGCCCATTCGGAGACCTTTGCAGACATTGTTTCGAACGTGTCAGTCGACAACAATAGTGCCCTCGCAGAAGATGGCATCGACATGGAGTTTCCTGCTATGTGTAGCCCGAGGATGAATATGTCCCCTGAGGACATGATAGGCGGTAGATCAAGTCGATCGAGTGATGGTAGGACGGGCTCTAGTGAACAGAAAAGGAAGCGCTCCATGCAGCAGTTTGAGACGTTTGACCTGATTTGCGAATGTATAGAGGCTGCAATTGATTAG ATGTTGAAAAAGACGTTTCAGGCCATTGTGGAGATGAGGGGCCCAGTAGGTAGTGGCTTCGACTGGAACGATGTCATCAAGTGCATCATCACCGAGAGGGACGTGTTCGATCATTGGGTCCGAACGCACCCTACAGCAAAAGGATTCCTGAACAAGCCATTCCCGCATTACGATACATTGTCGTACGTGTTCGGGAAATATCGAGCTACTGGGGCCCATTCGGAGACCTTTGCAGACATTGTTTCGAACGTGTCAGTCGACAACAATAGTGCCCTCGCAGAAGATGGCATCGACATGGAGTTTCCTGCTATGTGTAGCCCGAGGATGAATATGTCCCCTGAGGACATGATAGGCGGTAGATCAAGTCGATCGAGTGATGGTAGGACGGGCTCTAGTGAACAGAAAAGGAAGCGCTCCATGCAGCAGTTTGAGACGTTTGACCTGATTTGCGAATGTATAGAGGCTGCAATTGATTAG ATGTTGAAAAAGACGTTTCAGGCCATTGTGGAGATGAGGGGCCCAGTAGGTAGTGGCTTCGACTGGAACGATGTCATCAAGTGCATCATCACCGAGAGGGACGTGTTCGATCATTGGGTCCGAACGCACCCTACAGCAAAAGGATTCCTGAACAAGCCATTCCCGCATTACGATACATTGTCGTACGTGTTCGGGAAATATCGAGCTACTGGGGCCCATTCGGAGACCTTTGCAGACATTGTTTCGAACGTGTCAGTCGACAACAATAGTGCCCTCGCAGAAGATGGCATCGACATGGAGTTTCCTGCTATGTGTAGCCCGAGGATGAATATGTCCCCTGAGGACATGATAGGCGGTAGATCAAGTCGATCGAGTGATGGTAGGACGGGCTCTAGTGAACAGAAAAGGAAGCGCTCCATGCAGCAGTTTGAGACGTTTGACCTGATTTGCGAATGTATAGAGGCTGCAATTGATTAG MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICECIEAAID Homology
BLAST of IVF0023051 vs. ExPASy TrEMBL
Match: A0A5D3DLC6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G002060 PE=4 SV=1) HSP 1 Score: 312.8 bits (800), Expect = 8.4e-82 Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0
BLAST of IVF0023051 vs. ExPASy TrEMBL
Match: A0A5D3B9T0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00610 PE=4 SV=1) HSP 1 Score: 199.9 bits (507), Expect = 7.9e-48 Identity = 101/158 (63.92%), Postives = 110/158 (69.62%), Query Frame = 0
BLAST of IVF0023051 vs. ExPASy TrEMBL
Match: A0A5A7VE95 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G005370 PE=3 SV=1) HSP 1 Score: 184.1 bits (466), Expect = 4.5e-43 Identity = 93/134 (69.40%), Postives = 105/134 (78.36%), Query Frame = 0
BLAST of IVF0023051 vs. ExPASy TrEMBL
Match: A0A5A7TYU4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002690 PE=4 SV=1) HSP 1 Score: 175.6 bits (444), Expect = 1.6e-40 Identity = 88/116 (75.86%), Postives = 97/116 (83.62%), Query Frame = 0
BLAST of IVF0023051 vs. ExPASy TrEMBL
Match: A0A5D3E267 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001310 PE=4 SV=1) HSP 1 Score: 172.2 bits (435), Expect = 1.8e-39 Identity = 89/158 (56.33%), Postives = 107/158 (67.72%), Query Frame = 0
BLAST of IVF0023051 vs. NCBI nr
Match: KAA0055070.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24415.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 311 bits (798), Expect = 3.33e-106 Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0
BLAST of IVF0023051 vs. NCBI nr
Match: KAA0033551.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ95636.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 197 bits (502), Expect = 4.62e-61 Identity = 101/158 (63.92%), Postives = 110/158 (69.62%), Query Frame = 0
BLAST of IVF0023051 vs. NCBI nr
Match: KAA0066443.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa]) HSP 1 Score: 184 bits (466), Expect = 5.38e-54 Identity = 94/140 (67.14%), Postives = 106/140 (75.71%), Query Frame = 0
BLAST of IVF0023051 vs. NCBI nr
Match: KAA0048148.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08106.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 176 bits (446), Expect = 7.55e-53 Identity = 88/116 (75.86%), Postives = 97/116 (83.62%), Query Frame = 0
BLAST of IVF0023051 vs. NCBI nr
Match: TYK29878.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 171 bits (432), Expect = 3.05e-49 Identity = 89/158 (56.33%), Postives = 107/158 (67.72%), Query Frame = 0
BLAST of IVF0023051 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 45.4 bits (106), Expect = 4.8e-05 Identity = 16/57 (28.07%), Postives = 33/57 (57.89%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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