IVF0023051 (gene) Melon (IVF77) v1

Overview
NameIVF0023051
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr03: 2876134 .. 2876693 (-)
RNA-Seq ExpressionIVF0023051
SyntenyIVF0023051
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAAAAAGACGTTTCAGGCCATTGTGGAGATGAGGGGCCCAGTAGGTAGTGGCTTCGACTGGAACGATGTCATCAAGTGCATCATCACCGAGAGGGACGTGTTCGATCATTGGGTCCGAGTAAGAGTATGAACATAATTATATGACTAACTGGATTTTATGGAATACTAATTGCTTTGTTATTTTTTTGTGTTTTTTTTCAGACGCACCCTACAGCAAAAGGATTCCTGAACAAGCCATTCCCGCATTACGATACATTGTCGTACGTGTTCGGGAAATATCGAGCTACTGGGGCCCATTCGGAGACCTTTGCAGACATTGTTTCGAACGTGTCAGTCGACAACAATAGTGCCCTCGCAGAAGATGGCATCGACATGGAGTTTCCTGCTATGTGTAGCCCGAGGATGAATATGTCCCCTGAGGACATGATAGGCGGTAGATCAAGTCGATCGAGTGATGGTAGGACGGGCTCTAGTGAACAGAAAAGGAAGCGCTCCATGCAGCAGTTTGAGACGTTTGACCTGATTTGCGAATGTATAGAGGCTGCAATTGATTAG

mRNA sequence

ATGTTGAAAAAGACGTTTCAGGCCATTGTGGAGATGAGGGGCCCAGTAGGTAGTGGCTTCGACTGGAACGATGTCATCAAGTGCATCATCACCGAGAGGGACGTGTTCGATCATTGGGTCCGAACGCACCCTACAGCAAAAGGATTCCTGAACAAGCCATTCCCGCATTACGATACATTGTCGTACGTGTTCGGGAAATATCGAGCTACTGGGGCCCATTCGGAGACCTTTGCAGACATTGTTTCGAACGTGTCAGTCGACAACAATAGTGCCCTCGCAGAAGATGGCATCGACATGGAGTTTCCTGCTATGTGTAGCCCGAGGATGAATATGTCCCCTGAGGACATGATAGGCGGTAGATCAAGTCGATCGAGTGATGGTAGGACGGGCTCTAGTGAACAGAAAAGGAAGCGCTCCATGCAGCAGTTTGAGACGTTTGACCTGATTTGCGAATGTATAGAGGCTGCAATTGATTAG

Coding sequence (CDS)

ATGTTGAAAAAGACGTTTCAGGCCATTGTGGAGATGAGGGGCCCAGTAGGTAGTGGCTTCGACTGGAACGATGTCATCAAGTGCATCATCACCGAGAGGGACGTGTTCGATCATTGGGTCCGAACGCACCCTACAGCAAAAGGATTCCTGAACAAGCCATTCCCGCATTACGATACATTGTCGTACGTGTTCGGGAAATATCGAGCTACTGGGGCCCATTCGGAGACCTTTGCAGACATTGTTTCGAACGTGTCAGTCGACAACAATAGTGCCCTCGCAGAAGATGGCATCGACATGGAGTTTCCTGCTATGTGTAGCCCGAGGATGAATATGTCCCCTGAGGACATGATAGGCGGTAGATCAAGTCGATCGAGTGATGGTAGGACGGGCTCTAGTGAACAGAAAAGGAAGCGCTCCATGCAGCAGTTTGAGACGTTTGACCTGATTTGCGAATGTATAGAGGCTGCAATTGATTAG

Protein sequence

MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICECIEAAID
Homology
BLAST of IVF0023051 vs. ExPASy TrEMBL
Match: A0A5D3DLC6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G002060 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 8.4e-82
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0

Query: 1   MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTL 60
           MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTL
Sbjct: 1   MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTL 60

Query: 61  SYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGR 120
           SYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGR
Sbjct: 61  SYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGR 120

Query: 121 SSRSSDGRTGSSEQKRKRSMQQFETFDLICE 152
           SSRSSDGRTGSSEQKRKRSMQQFETFDLICE
Sbjct: 121 SSRSSDGRTGSSEQKRKRSMQQFETFDLICE 151

BLAST of IVF0023051 vs. ExPASy TrEMBL
Match: A0A5D3B9T0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00610 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 7.9e-48
Identity = 101/158 (63.92%), Postives = 110/158 (69.62%), Query Frame = 0

Query: 1   MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTL 60
           +LKKTFQAI EMRGP GSGF WND +KCIITERDVFDHWV THP AKG LNKPFPHYD L
Sbjct: 10  LLKKTFQAIAEMRGPAGSGFGWNDDVKCIITERDVFDHWVWTHPAAKGLLNKPFPHYDAL 69

Query: 61  SYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGR 120
                                            +D IDMEFPAMCSPRMNMSPE+M+GGR
Sbjct: 70  -----------------------------PVPTKDVIDMEFPAMCSPRMNMSPENMMGGR 129

Query: 121 SSRSSDGRTGSSEQKRKRSMQQFETFDLICECIEAAID 159
           S RS+DGR GS+ QKRK SMQQFET+DLI EC+EAA D
Sbjct: 130 SGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATD 138

BLAST of IVF0023051 vs. ExPASy TrEMBL
Match: A0A5A7VE95 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G005370 PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 4.5e-43
Identity = 93/134 (69.40%), Postives = 105/134 (78.36%), Query Frame = 0

Query: 20  FDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFAD 79
           F  ND +K II ERD+FDHWVRTHP AK  +N PFPHY+ LSYVF K RATG  ++TFAD
Sbjct: 183 FGLNDDVKFIIAERDMFDHWVRTHPVAKRLMNDPFPHYNALSYVFRKDRATGTRAKTFAD 242

Query: 80  IVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRS 139
           I SNV  DN+S   EDGIDMEF AM S RMN+SPE M+G RS + SDGRTGSS QKRKRS
Sbjct: 243 IDSNVLGDNDSVPVEDGIDMEFLAMSSLRMNLSPEGMMGSRSGQLSDGRTGSSGQKRKRS 302

Query: 140 MQQFETFDLICECI 154
           MQQFET+DLI EC+
Sbjct: 303 MQQFETYDLIRECL 316

BLAST of IVF0023051 vs. ExPASy TrEMBL
Match: A0A5A7TYU4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002690 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.6e-40
Identity = 88/116 (75.86%), Postives = 97/116 (83.62%), Query Frame = 0

Query: 43  HPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFP 102
           HP AK  LNKPF HYD LSYVF K +ATGAH+ETFADI SN+S   +S   +DGIDMEFP
Sbjct: 2   HPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNMSAGYDSVPTKDGIDMEFP 61

Query: 103 AMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICECIEAAID 159
            MCSPRMNMSP+DM+GGRS RSSDGRTGSSEQKRK SMQQFET+DLI EC+EAA D
Sbjct: 62  VMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATD 117

BLAST of IVF0023051 vs. ExPASy TrEMBL
Match: A0A5D3E267 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001310 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.8e-39
Identity = 89/158 (56.33%), Postives = 107/158 (67.72%), Query Frame = 0

Query: 1   MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTL 60
           +LK+T  AIVE++GP  SGF W+  +KCII  +DVFD W RTH   KG LNKPFPHYD L
Sbjct: 149 LLKRTIMAIVEIQGPTCSGFGWHYELKCIIAAKDVFDSWARTHLACKGLLNKPFPHYDEL 208

Query: 61  SYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGR 120
           SYVF K R TGA  E F DI SNV  +++   AEDG+DMEFP MCS RMN+S ED +G R
Sbjct: 209 SYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPTMCSLRMNVSLEDRMGAR 268

Query: 121 SSRSSDGRTGSSEQKRKRSMQQFETFDLICECIEAAID 159
            S S+  R GSS  KRKR   QFET D+  + +  + D
Sbjct: 269 PSMSTVDRMGSSGSKRKR-RGQFETVDVFRDAMHISND 305

BLAST of IVF0023051 vs. NCBI nr
Match: KAA0055070.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24415.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 311 bits (798), Expect = 3.33e-106
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0

Query: 1   MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTL 60
           MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTL
Sbjct: 1   MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTL 60

Query: 61  SYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGR 120
           SYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGR
Sbjct: 61  SYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGR 120

Query: 121 SSRSSDGRTGSSEQKRKRSMQQFETFDLICE 151
           SSRSSDGRTGSSEQKRKRSMQQFETFDLICE
Sbjct: 121 SSRSSDGRTGSSEQKRKRSMQQFETFDLICE 151

BLAST of IVF0023051 vs. NCBI nr
Match: KAA0033551.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ95636.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 197 bits (502), Expect = 4.62e-61
Identity = 101/158 (63.92%), Postives = 110/158 (69.62%), Query Frame = 0

Query: 1   MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTL 60
           +LKKTFQAI EMRGP GSGF WND +KCIITERDVFDHWV THP AKG LNKPFPHYD L
Sbjct: 10  LLKKTFQAIAEMRGPAGSGFGWNDDVKCIITERDVFDHWVWTHPAAKGLLNKPFPHYDAL 69

Query: 61  SYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGR 120
                                            +D IDMEFPAMCSPRMNMSPE+M+GGR
Sbjct: 70  PVP-----------------------------TKDVIDMEFPAMCSPRMNMSPENMMGGR 129

Query: 121 SSRSSDGRTGSSEQKRKRSMQQFETFDLICECIEAAID 158
           S RS+DGR GS+ QKRK SMQQFET+DLI EC+EAA D
Sbjct: 130 SGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATD 138

BLAST of IVF0023051 vs. NCBI nr
Match: KAA0066443.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 184 bits (466), Expect = 5.38e-54
Identity = 94/140 (67.14%), Postives = 106/140 (75.71%), Query Frame = 0

Query: 14  GPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAH 73
           G     F  ND +K II ERD+FDHWVRTHP AK  +N PFPHY+ LSYVF K RATG  
Sbjct: 177 GRTMGPFGLNDDVKFIIAERDMFDHWVRTHPVAKRLMNDPFPHYNALSYVFRKDRATGTR 236

Query: 74  SETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSE 133
           ++TFADI SNV  DN+S   EDGIDMEF AM S RMN+SPE M+G RS + SDGRTGSS 
Sbjct: 237 AKTFADIDSNVLGDNDSVPVEDGIDMEFLAMSSLRMNLSPEGMMGSRSGQLSDGRTGSSG 296

Query: 134 QKRKRSMQQFETFDLICECI 153
           QKRKRSMQQFET+DLI EC+
Sbjct: 297 QKRKRSMQQFETYDLIRECL 316

BLAST of IVF0023051 vs. NCBI nr
Match: KAA0048148.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08106.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 176 bits (446), Expect = 7.55e-53
Identity = 88/116 (75.86%), Postives = 97/116 (83.62%), Query Frame = 0

Query: 43  HPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFP 102
           HP AK  LNKPF HYD LSYVF K +ATGAH+ETFADI SN+S   +S   +DGIDMEFP
Sbjct: 2   HPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNMSAGYDSVPTKDGIDMEFP 61

Query: 103 AMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICECIEAAID 158
            MCSPRMNMSP+DM+GGRS RSSDGRTGSSEQKRK SMQQFET+DLI EC+EAA D
Sbjct: 62  VMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATD 117

BLAST of IVF0023051 vs. NCBI nr
Match: TYK29878.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 171 bits (432), Expect = 3.05e-49
Identity = 89/158 (56.33%), Postives = 107/158 (67.72%), Query Frame = 0

Query: 1   MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTL 60
           +LK+T  AIVE++GP  SGF W+  +KCII  +DVFD W RTH   KG LNKPFPHYD L
Sbjct: 149 LLKRTIMAIVEIQGPTCSGFGWHYELKCIIAAKDVFDSWARTHLACKGLLNKPFPHYDEL 208

Query: 61  SYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGR 120
           SYVF K R TGA  E F DI SNV  +++   AEDG+DMEFP MCS RMN+S ED +G R
Sbjct: 209 SYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPTMCSLRMNVSLEDRMGAR 268

Query: 121 SSRSSDGRTGSSEQKRKRSMQQFETFDLICECIEAAID 158
            S S+  R GSS  KRKR   QFET D+  + +  + D
Sbjct: 269 PSMSTVDRMGSSGSKRKRR-GQFETVDVFRDAMHISND 305

BLAST of IVF0023051 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 4.8e-05
Identity = 16/57 (28.07%), Postives = 33/57 (57.89%), Query Frame = 0

Query: 18  SGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHS 75
           +GF W+     +I + D+++ +++ HP A+ +  K  P Y  L ++FGK  + G ++
Sbjct: 399 NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPSYPNLCFIFGKETSDGRYT 455

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DLC68.4e-82100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3B9T07.9e-4863.92Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VE954.5e-4369.40Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
A0A5A7TYU41.6e-4075.86Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3E2671.8e-3956.33Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0055070.13.33e-106100.00retrotransposon protein [Cucumis melo var. makuwa] >TYK24415.1 retrotransposon p... [more]
KAA0033551.14.62e-6163.92retrotransposon protein [Cucumis melo var. makuwa] >TYJ95636.1 retrotransposon p... [more]
KAA0066443.15.38e-5467.14putative nuclease HARBI1 [Cucumis melo var. makuwa][more]
KAA0048148.17.55e-5375.86retrotransposon protein [Cucumis melo var. makuwa] >TYK08106.1 retrotransposon p... [more]
TYK29878.13.05e-4956.33retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
AT2G24960.24.8e-0528.07unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 112..139
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 2..139
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 2..139

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0023051.1IVF0023051.1mRNA