IVF0023022 (gene) Melon (IVF77) v1

Overview


Name	IVF0023022
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr08: 7031602 .. 7031853 (-)
RNA-Seq Expression	IVF0023022
Synteny	IVF0023022

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAGAAGAGATCGGGAGATTTTGAGAGAAGACCGGAGAAACCGTACCGGAATTGCGAGGAAGAGAGCGGGGGAGAAACGGAGATGGCGAACGAACGCCGCCGTGAACGGATGAAGGAGGGAGAGATGGAGATGGAGATGGAGAAGGAGAAAAGAGAAAGGGTGTGGAGCATAGACTATGGAAAAGGTAGAATGAAGAGAAATAGAGATAAATATACGAAGAAAGAGATGAAGCAATCAGCTTGGTGA

mRNA sequence

ATGGAAAAGAAGAGATCGGGAGATTTTGAGAGAAGACCGGAGAAACCGTACCGGAATTGCGAGGAAGAGAGCGGGGGAGAAACGGAGATGGCGAACGAACGCCGCCGTGAACGGATGAAGGAGGGAGAGATGGAGATGGAGATGGAGAAGGAGAAAAGAGAAAGGGTGTGGAGCATAGACTATGGAAAAGGTAGAATGAAGAGAAATAGAGATAAATATACGAAGAAAGAGATGAAGCAATCAGCTTGGTGA

Coding sequence (CDS)

ATGGAAAAGAAGAGATCGGGAGATTTTGAGAGAAGACCGGAGAAACCGTACCGGAATTGCGAGGAAGAGAGCGGGGGAGAAACGGAGATGGCGAACGAACGCCGCCGTGAACGGATGAAGGAGGGAGAGATGGAGATGGAGATGGAGAAGGAGAAAAGAGAAAGGGTGTGGAGCATAGACTATGGAAAAGGTAGAATGAAGAGAAATAGAGATAAATATACGAAGAAAGAGATGAAGCAATCAGCTTGGTGA

Protein sequence

MEKKRSGDFERRPEKPYRNCEEESGGETEMANERRRERMKEGEMEMEMEKEKRERVWSIDYGKGRMKRNRDKYTKKEMKQSAW

Homology

[Close]

BLAST of IVF0023022 vs. ExPASy TrEMBL
Match: A0A0A0KF64 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483365 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-09
Identity = 43/52 (82.69%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1  MEKKRSGDFERRPEKPYRNCEEESGGETEMANERRRERMKEGEMEMEMEKEK 53
          MEKKRSGDFERRPEKPY+NCEEESGGETEMANE RRERMKE E      KEK
Sbjct: 1  MEKKRSGDFERRPEKPYQNCEEESGGETEMANEGRRERMKERE-RWRRRKEK 51

[Close]

BLAST of IVF0023022 vs. NCBI nr
Match: KGN48355.1 (hypothetical protein Csa_003779 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 3.67e-16
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 0


Query: 1  MEKKRSGDFERRPEKPYRNCEEESGGETEMANERRRERMKEGE 43
          MEKKRSGDFERRPEKPY+NCEEESGGETEMANE RRERMKE E
Sbjct: 1  MEKKRSGDFERRPEKPYQNCEEESGGETEMANEGRRERMKERE 43

The following BLAST results are available for this feature:

BLAST of IVF0023022 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0023022 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KF64	1.0e-09	82.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483365 PE=4 SV=1	[more]

BLAST of IVF0023022 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48355.1	3.67e-16	93.02	hypothetical protein Csa_003779 [Cucumis sativus]	[more]

BLAST of IVF0023022 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0023022.1	IVF0023022.1	mRNA