IVF0022961 (gene) Melon (IVF77) v1

Overview
NameIVF0022961
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag-pol polyprotein
Locationchr10: 24126729 .. 24127034 (-)
RNA-Seq ExpressionIVF0022961
SyntenyIVF0022961
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAATGTGGATTTTTCACCTCGGAACCGTGATCAGGACTGTGGAACACCATACAAAGATAGATTTGACAAATTTGATAAGTTTGTGAGGTGTCATGAATGTGAGGGACACGTACACATTCAAGCGGAATGCACCATCTATTTGAAGAGAAAGAAGAAGATTCTCAACATCACTTTGTCAGATGAAGACACGACGTCAGACAGTGAGTGTGAAGACTACGGTAGAGCGTTAATCAGTTGTGAAGCTGAAGGAAGTTTAGAACTACTGAGTAATGATGAATTGCTACTTCAAGCAGTCATATAA

mRNA sequence

ATGGAAAATGTGGATTTTTCACCTCGGAACCGTGATCAGGACTGTGGAACACCATACAAAGATAGATTTGACAAATTTGATAAGTTTGTGAGGTGTCATGAATGTGAGGGACACGTACACATTCAAGCGGAATGCACCATCTATTTGAAGAGAAAGAAGAAGATTCTCAACATCACTTTGTCAGATGAAGACACGACGTCAGACAGTGAGTGTGAAGACTACGGTAGAGCGTTAATCAGTTGTGAAGCTGAAGGAAGTTTAGAACTACTGAGTAATGATGAATTGCTACTTCAAGCAGTCATATAA

Coding sequence (CDS)

ATGGAAAATGTGGATTTTTCACCTCGGAACCGTGATCAGGACTGTGGAACACCATACAAAGATAGATTTGACAAATTTGATAAGTTTGTGAGGTGTCATGAATGTGAGGGACACGTACACATTCAAGCGGAATGCACCATCTATTTGAAGAGAAAGAAGAAGATTCTCAACATCACTTTGTCAGATGAAGACACGACGTCAGACAGTGAGTGTGAAGACTACGGTAGAGCGTTAATCAGTTGTGAAGCTGAAGGAAGTTTAGAACTACTGAGTAATGATGAATTGCTACTTCAAGCAGTCATATAA

Protein sequence

MENVDFSPRNRDQDCGTPYKDRFDKFDKFVRCHECEGHVHIQAECTIYLKRKKKILNITLSDEDTTSDSECEDYGRALISCEAEGSLELLSNDELLLQAVI
Homology
BLAST of IVF0022961 vs. ExPASy TrEMBL
Match: A0A5A7VIA1 (Putative envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G001480 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 2.9e-51
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0

Query: 1   MENVDFSPRNRDQDCGTPYKDRFDKFDKFVRCHECEGHVHIQAECTIYLKRKKKILNITL 60
           MENVDFSPRNRDQDCGTPYKDRFDKFDKFVRCHECEGHVHIQAECTIYLKRKKKILNITL
Sbjct: 56  MENVDFSPRNRDQDCGTPYKDRFDKFDKFVRCHECEGHVHIQAECTIYLKRKKKILNITL 115

Query: 61  SDEDTTSDSECEDYGRALISCEAEGSLELLSNDELLLQAVI 102
           SDEDTTSDSECEDYGRALISCEAEGSLELLSNDELLLQAVI
Sbjct: 116 SDEDTTSDSECEDYGRALISCEAEGSLELLSNDELLLQAVI 156

BLAST of IVF0022961 vs. ExPASy TrEMBL
Match: A0A5D3C137 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G00680 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.7e-35
Identity = 76/99 (76.77%), Postives = 84/99 (84.85%), Query Frame = 0

Query: 3   NVDFSPRNRDQDCGTPYKDRFDKFDKFVRCHECEGHVHIQAECTIYLKRKKKILNITLSD 62
           NVDFSPR  DQ+ G  YKDRFDK DK VRCHECEG+ H QAEC  YLKRKKKILNITLSD
Sbjct: 129 NVDFSPRRCDQNQGISYKDRFDKSDKSVRCHECEGYDHFQAECLTYLKRKKKILNITLSD 188

Query: 63  EDTTSDSECEDYGRALISCEAEGSLELLSNDELLLQAVI 102
           EDT+SD+ECEDYGRALI C+ EGSLE+ +NDE LLQA+I
Sbjct: 189 EDTSSDNECEDYGRALIGCKVEGSLEIPNNDEFLLQAII 227

BLAST of IVF0022961 vs. ExPASy TrEMBL
Match: A0A5D3CEG7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G001620 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.3e-31
Identity = 71/100 (71.00%), Postives = 81/100 (81.00%), Query Frame = 0

Query: 2   ENVDFSPRNRDQDCGTPYKDRFDKFDKFVRCHECEGHVHIQAECTIYLKRKKKILNITLS 61
           +NVD   +  D+D  T +KD+ DKFDK VRCHECEG+ H QAEC  YLK+KKKILNITLS
Sbjct: 114 KNVDLPSKRCDKDQSTTHKDKSDKFDKSVRCHECEGYRHFQAECPTYLKKKKKILNITLS 173

Query: 62  DEDTTSDSECEDYGRALISCEAEGSLELLSNDELLLQAVI 102
           DEDT SDS CEDYGR+LI CEAEGS +L +NDELLLQAVI
Sbjct: 174 DEDTLSDSWCEDYGRSLIICEAEGSSKLSNNDELLLQAVI 213

BLAST of IVF0022961 vs. ExPASy TrEMBL
Match: A0A5D3BG63 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold369G00170 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.6e-23
Identity = 59/81 (72.84%), Postives = 65/81 (80.25%), Query Frame = 0

Query: 21  DRFDKFDKFVRCHECEGHVHIQAECTIYLKRKKKILNITLSDEDTTSDSECEDYGRALIS 80
           D+  K DK VRCHECEG+ H QAE   YLK KKK +NITL DEDT SDSECEDYGRAL +
Sbjct: 218 DKSGKSDKSVRCHECEGYRHFQAEYPTYLKIKKKSVNITLLDEDTLSDSECEDYGRALNN 277

Query: 81  CEAEGSLELLSNDELLLQAVI 102
           CEAEGS EL +NDELLLQA+I
Sbjct: 278 CEAEGSSELPNNDELLLQAII 298

BLAST of IVF0022961 vs. ExPASy TrEMBL
Match: A0A5A7VGI8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00050 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.4e-18
Identity = 52/82 (63.41%), Postives = 59/82 (71.95%), Query Frame = 0

Query: 4  VDFSPRNRDQDCGTPYKDRFDKFDKFVRCHECEGHVHIQAECTIYLKRKKKILNITLSDE 63
          +D + R RDQD  T YK   DK DK VRCHEC+G+ H Q EC  YLKRKKKILNITLSDE
Sbjct: 1  MDLTSRRRDQDRSTTYK---DKSDKSVRCHECKGYRHFQPECPTYLKRKKKILNITLSDE 60

Query: 64 DTTSDSECEDYGRALISCEAEG 86
          D +S+ E  D+ RALIS E EG
Sbjct: 61 DKSSNIESGDHNRALISYETEG 79

BLAST of IVF0022961 vs. NCBI nr
Match: KAA0065461.1 (putative envelope-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 211 bits (537), Expect = 3.49e-68
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0

Query: 1   MENVDFSPRNRDQDCGTPYKDRFDKFDKFVRCHECEGHVHIQAECTIYLKRKKKILNITL 60
           MENVDFSPRNRDQDCGTPYKDRFDKFDKFVRCHECEGHVHIQAECTIYLKRKKKILNITL
Sbjct: 56  MENVDFSPRNRDQDCGTPYKDRFDKFDKFVRCHECEGHVHIQAECTIYLKRKKKILNITL 115

Query: 61  SDEDTTSDSECEDYGRALISCEAEGSLELLSNDELLLQAVI 101
           SDEDTTSDSECEDYGRALISCEAEGSLELLSNDELLLQAVI
Sbjct: 116 SDEDTTSDSECEDYGRALISCEAEGSLELLSNDELLLQAVI 156

BLAST of IVF0022961 vs. NCBI nr
Match: KAA0047417.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK04126.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 159 bits (401), Expect = 4.67e-46
Identity = 76/99 (76.77%), Postives = 84/99 (84.85%), Query Frame = 0

Query: 3   NVDFSPRNRDQDCGTPYKDRFDKFDKFVRCHECEGHVHIQAECTIYLKRKKKILNITLSD 62
           NVDFSPR  DQ+ G  YKDRFDK DK VRCHECEG+ H QAEC  YLKRKKKILNITLSD
Sbjct: 129 NVDFSPRRCDQNQGISYKDRFDKSDKSVRCHECEGYDHFQAECLTYLKRKKKILNITLSD 188

Query: 63  EDTTSDSECEDYGRALISCEAEGSLELLSNDELLLQAVI 101
           EDT+SD+ECEDYGRALI C+ EGSLE+ +NDE LLQA+I
Sbjct: 189 EDTSSDNECEDYGRALIGCKVEGSLEIPNNDEFLLQAII 227

BLAST of IVF0022961 vs. NCBI nr
Match: KAA0043625.1 (uncharacterized protein E6C27_scaffold320G00680 [Cucumis melo var. makuwa] >TYK09740.1 uncharacterized protein E5676_scaffold447G001620 [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (364), Expect = 9.58e-41
Identity = 71/100 (71.00%), Postives = 81/100 (81.00%), Query Frame = 0

Query: 2   ENVDFSPRNRDQDCGTPYKDRFDKFDKFVRCHECEGHVHIQAECTIYLKRKKKILNITLS 61
           +NVD   +  D+D  T +KD+ DKFDK VRCHECEG+ H QAEC  YLK+KKKILNITLS
Sbjct: 114 KNVDLPSKRCDKDQSTTHKDKSDKFDKSVRCHECEGYRHFQAECPTYLKKKKKILNITLS 173

Query: 62  DEDTTSDSECEDYGRALISCEAEGSLELLSNDELLLQAVI 101
           DEDT SDS CEDYGR+LI CEAEGS +L +NDELLLQAVI
Sbjct: 174 DEDTLSDSWCEDYGRSLIICEAEGSSKLSNNDELLLQAVI 213

BLAST of IVF0022961 vs. NCBI nr
Match: TYJ98064.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (293), Expect = 2.82e-29
Identity = 59/81 (72.84%), Postives = 65/81 (80.25%), Query Frame = 0

Query: 21  DRFDKFDKFVRCHECEGHVHIQAECTIYLKRKKKILNITLSDEDTTSDSECEDYGRALIS 80
           D+  K DK VRCHECEG+ H QAE   YLK KKK +NITL DEDT SDSECEDYGRAL +
Sbjct: 218 DKSGKSDKSVRCHECEGYRHFQAEYPTYLKIKKKSVNITLLDEDTLSDSECEDYGRALNN 277

Query: 81  CEAEGSLELLSNDELLLQAVI 101
           CEAEGS EL +NDELLLQA+I
Sbjct: 278 CEAEGSSELPNNDELLLQAII 298

BLAST of IVF0022961 vs. NCBI nr
Match: KAA0067203.1 (uncharacterized protein E6C27_scaffold418G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (253), Expect = 6.22e-26
Identity = 52/82 (63.41%), Postives = 59/82 (71.95%), Query Frame = 0

Query: 4  VDFSPRNRDQDCGTPYKDRFDKFDKFVRCHECEGHVHIQAECTIYLKRKKKILNITLSDE 63
          +D + R RDQD  T YKD   K DK VRCHEC+G+ H Q EC  YLKRKKKILNITLSDE
Sbjct: 1  MDLTSRRRDQDRSTTYKD---KSDKSVRCHECKGYRHFQPECPTYLKRKKKILNITLSDE 60

Query: 64 DTTSDSECEDYGRALISCEAEG 85
          D +S+ E  D+ RALIS E EG
Sbjct: 61 DKSSNIESGDHNRALISYETEG 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VIA12.9e-51100.00Putative envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5D3C1371.7e-3576.77Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119... [more]
A0A5D3CEG73.3e-3171.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BG635.6e-2372.84Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A5A7VGI82.4e-1863.41Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0065461.13.49e-68100.00putative envelope-like protein [Cucumis melo var. makuwa][more]
KAA0047417.14.67e-4676.77gag-pol polyprotein [Cucumis melo var. makuwa] >TYK04126.1 gag-pol polyprotein [... [more]
KAA0043625.19.58e-4171.00uncharacterized protein E6C27_scaffold320G00680 [Cucumis melo var. makuwa] >TYK0... [more]
TYJ98064.12.82e-2972.84gag-proteinase polyprotein [Cucumis melo var. makuwa][more]
KAA0067203.16.22e-2663.41uncharacterized protein E6C27_scaffold418G00050 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0022961.2IVF0022961.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding