IVF0022946 (gene) Melon (IVF77) v1

Overview
NameIVF0022946
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr04: 21930696 .. 21930911 (-)
RNA-Seq ExpressionIVF0022946
SyntenyIVF0022946
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGATGATCAACGAAAATGGTCCATGCTCATTCAACAGTCTCTGCAGAGAGCGCCAGTACCTCCGTCCACCCGAGACGGCGACACCAACATTCCTGTACCCCTGGGGCAACAGGCCTTTGCTGGAAAGTCCACGGTGCCACCGGCATTCCCCGATCCAGATAATTTGGAGGTTCCCTCTGGTGTGGCCTTGAAAACAAATTTCATGTGTTAA

mRNA sequence

ATGAAAGATGATCAACGAAAATGGTCCATGCTCATTCAACAGTCTCTGCAGAGAGCGCCAGTACCTCCGTCCACCCGAGACGGCGACACCAACATTCCTGTACCCCTGGGGCAACAGGCCTTTGCTGGAAAGTCCACGGTGCCACCGGCATTCCCCGATCCAGATAATTTGGAGGTTCCCTCTGGTGTGGCCTTGAAAACAAATTTCATGTGTTAA

Coding sequence (CDS)

ATGAAAGATGATCAACGAAAATGGTCCATGCTCATTCAACAGTCTCTGCAGAGAGCGCCAGTACCTCCGTCCACCCGAGACGGCGACACCAACATTCCTGTACCCCTGGGGCAACAGGCCTTTGCTGGAAAGTCCACGGTGCCACCGGCATTCCCCGATCCAGATAATTTGGAGGTTCCCTCTGGTGTGGCCTTGAAAACAAATTTCATGTGTTAA

Protein sequence

MKDDQRKWSMLIQQSLQRAPVPPSTRDGDTNIPVPLGQQAFAGKSTVPPAFPDPDNLEVPSGVALKTNFMC
Homology
BLAST of IVF0022946 vs. ExPASy TrEMBL
Match: A0A5D3B777 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold63958G00010 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.5e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0

Query: 1  MKDDQRKWSMLIQQSLQRAPVPPSTRDGDTNIPVPLGQQAFAGKSTVPPAFPDPDNLEVP 60
          MKDDQRKWSMLIQQSLQRAPVPPSTRDGDTNIPVPLGQQAFAGKSTVPPAFPDPDNLEVP
Sbjct: 27 MKDDQRKWSMLIQQSLQRAPVPPSTRDGDTNIPVPLGQQAFAGKSTVPPAFPDPDNLEVP 86

Query: 61 SGVALKTNFMC 72
          SGVALKTNFMC
Sbjct: 87 SGVALKTNFMC 97

BLAST of IVF0022946 vs. ExPASy TrEMBL
Match: A0A0A0LCY5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G393150 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.6e-10
Identity = 33/49 (67.35%), Postives = 43/49 (87.76%), Query Frame = 0

Query: 1  MKDDQRKWSM---LIQQSLQRAPVPPSTRDGDTNIPVPLGQQAFAGKST 47
          +KDDQ+ WS+   L+QQSLQR PVPPS ++GDTNIPVP+GQ+AFAGK++
Sbjct: 27 IKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTNIPVPVGQRAFAGKTS 75

BLAST of IVF0022946 vs. NCBI nr
Match: KAA0025373.1 (hypothetical protein E6C27_scaffold1204G00600 [Cucumis melo var. makuwa] >TYJ95702.1 hypothetical protein E5676_scaffold63958G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 148 bits (374), Expect = 1.08e-44
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0

Query: 1  MKDDQRKWSMLIQQSLQRAPVPPSTRDGDTNIPVPLGQQAFAGKSTVPPAFPDPDNLEVP 60
          MKDDQRKWSMLIQQSLQRAPVPPSTRDGDTNIPVPLGQQAFAGKSTVPPAFPDPDNLEVP
Sbjct: 27 MKDDQRKWSMLIQQSLQRAPVPPSTRDGDTNIPVPLGQQAFAGKSTVPPAFPDPDNLEVP 86

Query: 61 SGVALKTNFMC 71
          SGVALKTNFMC
Sbjct: 87 SGVALKTNFMC 97

BLAST of IVF0022946 vs. NCBI nr
Match: KAG6571506.1 (hypothetical protein SDJN03_28234, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.0 bits (245), Expect = 4.63e-25
Identity = 48/68 (70.59%), Postives = 56/68 (82.35%), Query Frame = 0

Query: 1  MKDDQRKWSMLIQQSLQRAPVPPSTRDGDTNIPVPLGQQAFAGKSTVPPAFPDPDNLEVP 60
          MK DQ+KWSM++QQSLQRAPVPPS +DG T IPVPLG++AFAGK   PPA   PD+L +P
Sbjct: 27 MKVDQQKWSMVLQQSLQRAPVPPSGKDGGTTIPVPLGERAFAGKFMAPPADAYPDHLLIP 86

Query: 61 SGVALKTN 68
          SGVAL TN
Sbjct: 87 SGVALNTN 94

BLAST of IVF0022946 vs. NCBI nr
Match: KAG6571505.1 (hypothetical protein SDJN03_28233, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.8 bits (229), Expect = 1.27e-22
Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = 0

Query: 1  MKDDQRKWSMLIQQSLQRAPVPPSTRDGDTNIPVPLGQQAFAGKSTVPPAFPDPDNLEVP 60
          MKDD++KWS+L+QQSLQRAPVPPS ++G T IPVPLGQ+AF GKST  PA      + VP
Sbjct: 27 MKDDRQKWSILLQQSLQRAPVPPSAKNGGTTIPVPLGQRAFVGKSTPSPAHSYHHQVPVP 86

Query: 61 SGVALKTN 68
           GVA+KTN
Sbjct: 87 FGVAMKTN 94

BLAST of IVF0022946 vs. NCBI nr
Match: KAG6571503.1 (hypothetical protein SDJN03_28231, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.0 bits (206), Expect = 4.12e-19
Identity = 42/69 (60.87%), Postives = 53/69 (76.81%), Query Frame = 0

Query: 1  MKDDQRKWS-MLIQQSLQRAPVPPSTRDGDTNIPVPLGQQAFAGKSTVPPAFPDPDNLEV 60
          MK+D++KWS +L+QQSLQRAPVPPS ++G T IPVPLGQ++F GKST  PA      + V
Sbjct: 27 MKEDRQKWSILLLQQSLQRAPVPPSAKNGGTTIPVPLGQRSFVGKSTPSPAHSYHHQVPV 86

Query: 61 PSGVALKTN 68
          P GVA+ TN
Sbjct: 87 PFGVAMNTN 95

BLAST of IVF0022946 vs. NCBI nr
Match: KAG6571504.1 (hypothetical protein SDJN03_28232, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.0 bits (193), Expect = 4.02e-17
Identity = 42/70 (60.00%), Postives = 52/70 (74.29%), Query Frame = 0

Query: 1  MKDDQRKWS-MLIQQSLQRAPVPPSTRDGDTNIPVPLGQQAFAGKSTVPPAFPDPDNLEV 60
          MK+D +KWS +L+QQSLQRAPVPP+ ++G T IP PLGQ+AF GKST  PA      + V
Sbjct: 27 MKEDPQKWSILLLQQSLQRAPVPPNAKNGGTTIPTPLGQRAFVGKSTPSPAHSYHHQVPV 86

Query: 61 PSGVA-LKTN 68
          P GVA +KTN
Sbjct: 87 PLGVAAMKTN 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3B7772.5e-33100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LCY56.6e-1067.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G393150 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAA0025373.11.08e-44100.00hypothetical protein E6C27_scaffold1204G00600 [Cucumis melo var. makuwa] >TYJ957... [more]
KAG6571506.14.63e-2570.59hypothetical protein SDJN03_28234, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571505.11.27e-2266.18hypothetical protein SDJN03_28233, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571503.14.12e-1960.87hypothetical protein SDJN03_28231, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571504.14.02e-1760.00hypothetical protein SDJN03_28232, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0022946.1IVF0022946.1mRNA