IVF0022931 (gene) Melon (IVF77) v1

Overview


Name	IVF0022931
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Defensin-like protein 3
Location	chr01: 18481725 .. 18482593 (-)
RNA-Seq Expression	IVF0022931
Synteny	IVF0022931

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGGAGAAGGATTAAGAAAGCTCACAGTTGTGGTGCTCATCTTCCTAGTCTTTGCTTCTGGTAATTTGATCCTCCTGCTTGTTCATGGTTTATGCCTTAGGACTCTGGAGAGCTAAATTAGACTGATATGTATTACTAATCAAAGAATCAAACTGTATTGTTTTTGTTTATCTTATGAAACGTTCAGCAAAACTTTTTTCCTTTGATTTATTTTACTGCTAGAAATGGATTACAAATTTTCTTAAGTGGATATACACAGTTTGATACCCGAATTGGAATTTGCAACATGATACCCGAATTGGAATTTGCAACATCTACAAAAGAAATTGGTAAACTCTATTTAGACTTGCGGAGAATTCAGTTGAAGTATGTAGGCCAGAAATTTTCATGGAAAAAAGAAATACAATTAGAAATTTTTAGTTGATAATGTAAAAAGAAGATTGATGATTGTATGCATAAATGTATGTTACTGTGATAAAGTGCAAACTATGGGAATTGGTATTGAATATAAAGAACTATAAGACAGTCGAGTGTTTCGAGTTACTTAATCCTTTTCTCTCAAGATCTCTTTCAAGCTCACCAAGTGTTTCTTCTTTTCCATTCCCTCTGTGTTTATAACCAAAATAGCATTAGCAAATGCTCTAACTAATGACTAATATATCTCTAATGACATTCTTATCATACTGCTACAGGCTGGATGGTGGTGCAGACAGAGGGGCTGACTTGTTATAAACCGAGCACGGCGTTTCAGGGAACATGCAATTCAGCTGAGGAATGTGGTAGAGTTTGTTTTTATCAAGAGGGTTGGGATGATGGGTTTTGCTCAGGTGATAAATGCATCTGTACAGAGAAATGCTGCTGCTAA

mRNA sequence

ATGGGGGGAGAAGGATTAAGAAAGCTCACAGTTGTGGTGCTCATCTTCCTAGTCTTTGCTTCTGGCTGGATGGTGGTGCAGACAGAGGGGCTGACTTGTTATAAACCGAGCACGGCGTTTCAGGGAACATGCAATTCAGCTGAGGAATGTGGTAGAGTTTGTTTTTATCAAGAGGGTTGGGATGATGGGTTTTGCTCAGGTGATAAATGCATCTGTACAGAGAAATGCTGCTGCTAA

Coding sequence (CDS)

ATGGGGGGAGAAGGATTAAGAAAGCTCACAGTTGTGGTGCTCATCTTCCTAGTCTTTGCTTCTGGCTGGATGGTGGTGCAGACAGAGGGGCTGACTTGTTATAAACCGAGCACGGCGTTTCAGGGAACATGCAATTCAGCTGAGGAATGTGGTAGAGTTTGTTTTTATCAAGAGGGTTGGGATGATGGGTTTTGCTCAGGTGATAAATGCATCTGTACAGAGAAATGCTGCTGCTAA

Protein sequence

MGGEGLRKLTVVVLIFLVFASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGWDDGFCSGDKCICTEKCCC

Homology

[Close]

BLAST of IVF0022931 vs. ExPASy Swiss-Prot
Match: Q9C947 (Defensin-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=PDF2.4 PE=3 SV=2)

HSP 1 Score: 50.8 bits (120), Expect = 7.9e-06
Identity = 25/69 (36.23%), Postives = 38/69 (55.07%), Query Frame = 0


Query: 10 TVVVLIFLVFASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGWDDGFCSG-- 69
          + ++L+F++ A+   +V  E  TC   S  F G C S+  C  VC + EG+ DG C G  
Sbjct: 9  SALLLLFMILATVMGLVTVEARTCETSSNLFNGPCLSSSNCANVC-HNEGFSDGDCRGFR 68

Query: 70 DKCICTEKC 77
           +C+CT  C
Sbjct: 69 RRCLCTRPC 76

[Close]

BLAST of IVF0022931 vs. ExPASy TrEMBL
Match: A0A5A7V3H5 (Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00550 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 6.7e-40
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MGGEGLRKLTVVVLIFLVFASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGW 60
          MGGEGLRKLTVVVLIFLVFASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGW
Sbjct: 1  MGGEGLRKLTVVVLIFLVFASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGW 60

Query: 61 DDGFCSGDKCICTEKCCC 79
          DDGFCSGDKCICTEKCCC
Sbjct: 61 DDGFCSGDKCICTEKCCC 78

[Close]

BLAST of IVF0022931 vs. ExPASy TrEMBL
Match: A0A6J1EUK4 (defensin Tk-AMP-D4-like OS=Cucurbita moschata OX=3662 GN=LOC111438039 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 9.1e-21
Identity = 49/76 (64.47%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 1  MGGEGLRKLTVVVLIFLVFASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGW 60
          M G+ LR L VVV IFL  ASGWMVVQTEG TCYK + AF G+C S   C   C   EGW
Sbjct: 1  MAGQSLRNLKVVVFIFLALASGWMVVQTEGRTCYKHNDAFIGSCTSTAACADFCITFEGW 60

Query: 61 DDGFCSGDKCICTEKC 77
          DDGFCSGDKC CT++C
Sbjct: 61 DDGFCSGDKCTCTKQC 76

[Close]

BLAST of IVF0022931 vs. ExPASy TrEMBL
Match: A0A6J1IBG0 (defensin-like protein 5 OS=Cucurbita maxima OX=3661 GN=LOC111473130 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.2e-18
Identity = 47/76 (61.84%), Postives = 53/76 (69.74%), Query Frame = 0


Query: 1  MGGEGLRKLTVVVLIFLVFASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGW 60
          M G+ LR L +VV IFL   SGWMVVQTEG TCYK S AF G C +A  C  +C   E W
Sbjct: 1  MAGQSLRNLKIVVFIFLALTSGWMVVQTEGRTCYKHSDAFIGPCIAA-TCAELCISFEKW 60

Query: 61 DDGFCSGDKCICTEKC 77
          DDGFCSGDKC CT++C
Sbjct: 61 DDGFCSGDKCTCTKQC 75

[Close]

BLAST of IVF0022931 vs. ExPASy TrEMBL
Match: A0A6J1IH26 (defensin-like protein 5 OS=Cucurbita maxima OX=3661 GN=LOC111473392 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.2e-18
Identity = 47/76 (61.84%), Postives = 53/76 (69.74%), Query Frame = 0


Query: 1  MGGEGLRKLTVVVLIFLVFASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGW 60
          M G+ LR L +VV IFL   SGWMVVQTEG TCYK S AF G C +A  C  +C   E W
Sbjct: 1  MAGQSLRSLKIVVFIFLALTSGWMVVQTEGRTCYKHSDAFIGPCIAA-TCAELCISFEKW 60

Query: 61 DDGFCSGDKCICTEKC 77
          DDGFCSGDKC CT++C
Sbjct: 61 DDGFCSGDKCTCTKQC 75

[Close]

BLAST of IVF0022931 vs. ExPASy TrEMBL
Match: A0A6J1IEV4 (defensin-like protein 5 OS=Cucurbita maxima OX=3661 GN=LOC111475548 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.2e-18
Identity = 47/76 (61.84%), Postives = 53/76 (69.74%), Query Frame = 0


Query: 1  MGGEGLRKLTVVVLIFLVFASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGW 60
          M G+ LR L +VV IFL   SGWMVVQTEG TCYK S AF G C +A  C  +C   E W
Sbjct: 1  MAGQSLRNLKIVVFIFLAVTSGWMVVQTEGRTCYKHSDAFIGPCIAA-TCAELCISFEKW 60

Query: 61 DDGFCSGDKCICTEKC 77
          DDGFCSGDKC CT++C
Sbjct: 61 DDGFCSGDKCTCTKQC 75

[Close]

BLAST of IVF0022931 vs. NCBI nr
Match: KAA0062792.1 (defensin-like protein 3 [Cucumis melo var. makuwa] >TYJ96761.1 defensin-like protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 171 bits (434), Expect = 5.73e-54
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MGGEGLRKLTVVVLIFLVFASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGW 60
          MGGEGLRKLTVVVLIFLVFASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGW
Sbjct: 1  MGGEGLRKLTVVVLIFLVFASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGW 60

Query: 61 DDGFCSGDKCICTEKCCC 78
          DDGFCSGDKCICTEKCCC
Sbjct: 61 DDGFCSGDKCICTEKCCC 78

[Close]

BLAST of IVF0022931 vs. NCBI nr
Match: KAE8646110.1 (hypothetical protein Csa_016182 [Cucumis sativus])

HSP 1 Score: 154 bits (388), Expect = 6.03e-47
Identity = 67/78 (85.90%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 1  MGGEGLRKLTVVVLIFLVFASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGW 60
          MGGEGLRKLTVVVLIFL FASGWMVVQTEGLTCY+PST FQGTCN+A+EC  VCFYQEGW
Sbjct: 1  MGGEGLRKLTVVVLIFLAFASGWMVVQTEGLTCYRPSTVFQGTCNTAQECAIVCFYQEGW 60

Query: 61 DDGFCSGDKCICTEKCCC 78
          DDGFCS DKC+CT++CCC
Sbjct: 61 DDGFCSADKCVCTKQCCC 78

[Close]

BLAST of IVF0022931 vs. NCBI nr
Match: XP_022931766.1 (defensin Tk-AMP-D4-like [Cucurbita moschata])

HSP 1 Score: 107 bits (268), Expect = 1.33e-28
Identity = 49/76 (64.47%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 1  MGGEGLRKLTVVVLIFLVFASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGW 60
          M G+ LR L VVV IFL  ASGWMVVQTEG TCYK + AF G+C S   C   C   EGW
Sbjct: 1  MAGQSLRNLKVVVFIFLALASGWMVVQTEGRTCYKHNDAFIGSCTSTAACADFCITFEGW 60

Query: 61 DDGFCSGDKCICTEKC 76
          DDGFCSGDKC CT++C
Sbjct: 61 DDGFCSGDKCTCTKQC 76

[Close]

BLAST of IVF0022931 vs. NCBI nr
Match: KAG6590329.1 (Defensin-like protein 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107 bits (268), Expect = 1.33e-28
Identity = 49/76 (64.47%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 1  MGGEGLRKLTVVVLIFLVFASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGW 60
          M G+ LR L VVV IFL  ASGWMVVQTEG TCYK + AF G+C S   C   C   EGW
Sbjct: 1  MAGQSLRNLKVVVFIFLALASGWMVVQTEGRTCYKHNDAFIGSCTSTAACADFCITFEGW 60

Query: 61 DDGFCSGDKCICTEKC 76
          DDGFCSGDKC CT++C
Sbjct: 61 DDGFCSGDKCTCTKQC 76

[Close]

BLAST of IVF0022931 vs. NCBI nr
Match: XP_023520732.1 (defensin-like protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 106 bits (264), Expect = 5.43e-28
Identity = 49/76 (64.47%), Postives = 53/76 (69.74%), Query Frame = 0


Query: 1  MGGEGLRKLTVVVLIFLVFASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGW 60
          M G+ LR L VVV IFL  ASGWMVVQTEG TCYK + AF G C S   C   C   EGW
Sbjct: 1  MTGQSLRNLKVVVFIFLALASGWMVVQTEGRTCYKHNDAFIGPCTSTAACADFCISFEGW 60

Query: 61 DDGFCSGDKCICTEKC 76
          DDGFCSGDKC CT++C
Sbjct: 61 DDGFCSGDKCTCTKQC 76

[Close]

BLAST of IVF0022931 vs. TAIR 10
Match: AT1G61070.1 (low-molecular-weight cysteine-rich 66 )

HSP 1 Score: 50.8 bits (120), Expect = 5.6e-07
Identity = 25/69 (36.23%), Postives = 38/69 (55.07%), Query Frame = 0


Query: 10 TVVVLIFLVFASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGWDDGFCSG-- 69
          + ++L+F++ A+   +V  E  TC   S  F G C S+  C  VC + EG+ DG C G  
Sbjct: 9  SALLLLFMILATVMGLVTVEARTCETSSNLFNGPCLSSSNCANVC-HNEGFSDGDCRGFR 68

Query: 70 DKCICTEKC 77
           +C+CT  C
Sbjct: 69 RRCLCTRPC 76

The following BLAST results are available for this feature:

BLAST of IVF0022931 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C947	7.9e-06	36.23	Defensin-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=PDF2.4 PE=3 SV=2	[more]

BLAST of IVF0022931 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V3H5	6.7e-40	100.00	Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1EUK4	9.1e-21	64.47	defensin Tk-AMP-D4-like OS=Cucurbita moschata OX=3662 GN=LOC111438039 PE=4 SV=1	[more]
A0A6J1IBG0	3.2e-18	61.84	defensin-like protein 5 OS=Cucurbita maxima OX=3661 GN=LOC111473130 PE=4 SV=1	[more]
A0A6J1IH26	3.2e-18	61.84	defensin-like protein 5 OS=Cucurbita maxima OX=3661 GN=LOC111473392 PE=4 SV=1	[more]
A0A6J1IEV4	4.2e-18	61.84	defensin-like protein 5 OS=Cucurbita maxima OX=3661 GN=LOC111475548 PE=4 SV=1	[more]

BLAST of IVF0022931 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062792.1	5.73e-54	100.00	defensin-like protein 3 [Cucumis melo var. makuwa] >TYJ96761.1 defensin-like pro...	[more]
KAE8646110.1	6.03e-47	85.90	hypothetical protein Csa_016182 [Cucumis sativus]	[more]
XP_022931766.1	1.33e-28	64.47	defensin Tk-AMP-D4-like [Cucurbita moschata]	[more]
KAG6590329.1	1.33e-28	64.47	Defensin-like protein 8, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023520732.1	5.43e-28	64.47	defensin-like protein 2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of IVF0022931 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G61070.1	5.6e-07	36.23	low-molecular-weight cysteine-rich 66	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003614	Knottin, scorpion toxin-like	SMART	SM00505	gth_4	coord: 32..76 e-value: 0.0042 score: 26.3
IPR036574	Knottin, scorpion toxin-like superfamily	GENE3D	3.30.30.10		coord: 31..76 e-value: 1.1E-8 score: 37.1
IPR036574	Knottin, scorpion toxin-like superfamily	SUPERFAMILY	57095	Scorpion toxin-like	coord: 32..76
None	No IPR available	PFAM	PF00304	Gamma-thionin	coord: 32..76 e-value: 3.7E-7 score: 30.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0022931.1	IVF0022931.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0031640	killing of cells of other organism
biological_process	GO:0006952	defense response