IVF0022859 (gene) Melon (IVF77) v1

Overview


Name	IVF0022859
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr12: 13921745 .. 13922059 (-)
RNA-Seq Expression	IVF0022859
Synteny	IVF0022859

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACGGCGGCGAGGGACGGCAACAACGACGGAACGAAAGGCGGCGACGACAATGACGACGGAACGAAAGCCACGGCGCGATTCTCTCCTCTCTTTCCCCTTTCGGTTTCAATTCTGTGAATACAGAACTGAATCGTGTATAAAAGGGATTTCCCGACGCAGTGTGCGGCGTTGGAAAATCCCCAAAAAGGCATCGGGAATACCATTATTCCCAACGCTCAATAAAAGATTTTCCCGACGCGCCACGATGCGTCGGAAAAATCCCTTATTCCTGACGACGTTCCCGATGCACTCTGCACAGCATCGAGAATAA

mRNA sequence

ATGGAACGGCGGCGAGGGACGGCAACAACGACGGAACGAAAGGCGGCGACGACAATGACGACGGAACGAAAGCCACGGCGCGATTCTCTCCTCTCTTTCCCCTTTCGGTTTCAATTCTGTGAATACAGAACTGAATCGTGTATAAAAGGGATTTCCCGACGCAGTGTGCGGCGTTGGAAAATCCCCAAAAAGGCATCGGGAATACCATTATTCCCAACGCTCAATAAAAGATTTTCCCGACGCGCCACGATGCGTCGGAAAAATCCCTTATTCCTGACGACGTTCCCGATGCACTCTGCACAGCATCGAGAATAA

Coding sequence (CDS)

ATGGAACGGCGGCGAGGGACGGCAACAACGACGGAACGAAAGGCGGCGACGACAATGACGACGGAACGAAAGCCACGGCGCGATTCTCTCCTCTCTTTCCCCTTTCGGTTTCAATTCTGTGAATACAGAACTGAATCGTGTATAAAAGGGATTTCCCGACGCAGTGTGCGGCGTTGGAAAATCCCCAAAAAGGCATCGGGAATACCATTATTCCCAACGCTCAATAAAAGATTTTCCCGACGCGCCACGATGCGTCGGAAAAATCCCTTATTCCTGACGACGTTCCCGATGCACTCTGCACAGCATCGAGAATAA

Protein sequence

MERRRGTATTTERKAATTMTTERKPRRDSLLSFPFRFQFCEYRTESCIKGISRRSVRRWKIPKKASGIPLFPTLNKRFSRRATMRRKNPLFLTTFPMHSAQHRE

Homology

[Close]

BLAST of IVF0022859 vs. ExPASy TrEMBL
Match: A0A5A7UVI4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00130 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.1e-05
Identity = 43/112 (38.39%), Postives = 55/112 (49.11%), Query Frame = 0


Query: 1   MERRRGTAT--------TTERKAATTMTTERKPRRDSLLSFPFRFQFCEYRTESCIKGIS 60
           + RRRGT                AT + T   P   SLL     F    Y+T++ +KG  
Sbjct: 136 VRRRRGTTAREGGDGRQQNNGGRATKIATTSSPFLISLLG----FGSVNYKTKTILKGFP 195

Query: 61  RRSVRRWKIPKKASGIPLFPTLNKRFSRRATMRRKNPLFLTTFPMHSAQHRE 105
                R +IP+ ASG   FPTL KRFSRR   RR+ PLF T+ P H ++ RE
Sbjct: 196 DAVTWRREIPQNASGKGEFPTLIKRFSRRFMRRREKPLFPTSLPTHCSRRRE 243

[Close]

BLAST of IVF0022859 vs. NCBI nr
Match: KAA0059110.1 (hypothetical protein E6C27_scaffold430G00170 [Cucumis melo var. makuwa] >TYK21615.1 hypothetical protein E5676_scaffold150G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 2.95e-07
Identity = 38/89 (42.70%), Postives = 49/89 (55.06%), Query Frame = 0


Query: 16  ATTMTTERKPRRDSLLSFPFRFQFCEYRTESCIKGISRRSVRRWKIPKKASGIPLFPTLN 75
           AT + T   P   SLL F        Y+T++ +KG       R +IP+ ASG   FPTL 
Sbjct: 159 ATKIATTSSPFLISLLGFGS----VNYKTKTILKGFPDAVTWRREIPQNASGKGEFPTLI 218

Query: 76  KRFSRRATMRRKNPLFLTTFPMHSAQHRE 104
           KRFSRR   RR+ PLF T+ P H ++ RE
Sbjct: 219 KRFSRRFMRRREKPLFPTSLPTHCSRRRE 243

The following BLAST results are available for this feature:

BLAST of IVF0022859 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0022859 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UVI4	7.1e-05	38.39	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0022859 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059110.1	2.95e-07	42.70	hypothetical protein E6C27_scaffold430G00170 [Cucumis melo var. makuwa] >TYK2161...	[more]

BLAST of IVF0022859 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0022859.1	IVF0022859.1	mRNA