IVF0022774 (gene) Melon (IVF77) v1

Overview
NameIVF0022774
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr05: 6478441 .. 6478659 (-)
RNA-Seq ExpressionIVF0022774
SyntenyIVF0022774
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAATAACGAGAAGGACATTATGGGGATCAAGGAAATGATTCTTGACTTGAAGGTGAGTGTGGAGAGACTCGAGGAAGAGACGAAGGAAAACAACATAAACAAAAAGAAAAAGGAATTGGGTACGTCAGATGGCTCATATTACAAGATGAAAGAAAAGATGGAGGAAGTAGAAGTTATGAATAACCTTGGAGGAGGATCAAATGATAAAAGTTAA

mRNA sequence

ATGGAGAATAACGAGAAGGACATTATGGGGATCAAGGAAATGATTCTTGACTTGAAGGTGAGTGTGGAGAGACTCGAGGAAGAGACGAAGGAAAACAACATAAACAAAAAGAAAAAGGAATTGGGTACGTCAGATGGCTCATATTACAAGATGAAAGAAAAGATGGAGGAAGTAGAAGTTATGAATAACCTTGGAGGAGGATCAAATGATAAAAGTTAA

Coding sequence (CDS)

ATGGAGAATAACGAGAAGGACATTATGGGGATCAAGGAAATGATTCTTGACTTGAAGGTGAGTGTGGAGAGACTCGAGGAAGAGACGAAGGAAAACAACATAAACAAAAAGAAAAAGGAATTGGGTACGTCAGATGGCTCATATTACAAGATGAAAGAAAAGATGGAGGAAGTAGAAGTTATGAATAACCTTGGAGGAGGATCAAATGATAAAAGTTAA

Protein sequence

MENNEKDIMGIKEMILDLKVSVERLEEETKENNINKKKKELGTSDGSYYKMKEKMEEVEVMNNLGGGSNDKS
Homology
BLAST of IVF0022774 vs. ExPASy TrEMBL
Match: A0A5D3CZ52 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00590 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.7e-29
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0

Query: 1  MENNEKDIMGIKEMILDLKVSVERLEEETKENNINKKKKELGTSDGSYYKMKEKMEEVEV 60
          MENNEKDIMGIKEMILDLKVSVERLEEETKENNINKKKKELGTSDGSYYKMKEKMEEVEV
Sbjct: 1  MENNEKDIMGIKEMILDLKVSVERLEEETKENNINKKKKELGTSDGSYYKMKEKMEEVEV 60

Query: 61 MNNLGGGSNDKS 73
          MNNLGGGSNDKS
Sbjct: 61 MNNLGGGSNDKS 72

BLAST of IVF0022774 vs. ExPASy TrEMBL
Match: A0A5A7U8V7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G001810 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.8e-14
Identity = 46/72 (63.89%), Postives = 58/72 (80.56%), Query Frame = 0

Query: 1  MENNEKDIMGIKEMILDLKVSVERLEEETKENNINKKKKELGTSDGSYYKMKEKMEEVEV 60
          MENNEK+ MGIKEMIL LK+S ERL EE KEN+ +++K++  TSDG+ YKMK KME+V+ 
Sbjct: 10 MENNEKETMGIKEMILALKMSTERLAEEMKENSSSRRKEKSSTSDGTNYKMKGKMEDVKA 69

Query: 61 MNNLGGGSNDKS 73
          MNN GGG N +S
Sbjct: 70 MNNPGGGLNGRS 81

BLAST of IVF0022774 vs. ExPASy TrEMBL
Match: A0A5A7TKV5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00200 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.1e-10
Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 0

Query: 4  NEKDIMGIKEMILDLKVSVERLEEETKENNINKKKKELGTSDGSYYKMKEKMEEVEVMNN 63
          +EK++ GIKEMIL LK+SVERL +E +EN+ +K++KE   SDGS YKMK K+EEVE M  
Sbjct: 13 HEKEMTGIKEMILALKMSVERLTDEMRENSNSKRRKESSMSDGSNYKMKRKIEEVEAMTT 72

Query: 64 LGGGSNDKS 73
            GGS D+S
Sbjct: 73 PRGGSFDRS 81

BLAST of IVF0022774 vs. ExPASy TrEMBL
Match: A0A5A7U935 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G002860 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.1e-10
Identity = 42/69 (60.87%), Postives = 53/69 (76.81%), Query Frame = 0

Query: 4  NEKDIMGIKEMILDLKVSVERLEEETKENNINKKKKELGTSDGSYYKMKEKMEEVEVMNN 63
          +EK++  IKEMIL LK+SVERL +E KEN+ +K+++ELGTSDGS Y MK K+EEVE    
Sbjct: 13 HEKEMKRIKEMILALKMSVERLTDEMKENSNSKRREELGTSDGSSYMMKGKVEEVEATTT 72

Query: 64 LGGGSNDKS 73
            GGS DKS
Sbjct: 73 PSGGSFDKS 81

BLAST of IVF0022774 vs. ExPASy TrEMBL
Match: A0A5D3DCK9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00330 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 0

Query: 4  NEKDIMGIKEMILDLKVSVERLEEETKENNINKKKKELGTSDGSYYKMKEKMEEVEVMNN 63
          +EK++  IKEMIL LK+SVERL +E KEN+ +K+++ELGTSDGS Y MK K+EEVE    
Sbjct: 13 HEKEMKRIKEMILALKMSVERLTDEMKENSNSKRREELGTSDGSSYMMKGKVEEVEATTT 72

Query: 64 LGGGSNDKS 73
            GGS DK+
Sbjct: 73 PSGGSFDKT 81

BLAST of IVF0022774 vs. NCBI nr
Match: KAA0031975.1 (uncharacterized protein E6C27_scaffold134G00650 [Cucumis melo var. makuwa] >TYK16795.1 uncharacterized protein E5676_scaffold96G00590 [Cucumis melo var. makuwa])

HSP 1 Score: 135 bits (341), Expect = 5.88e-40
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0

Query: 1  MENNEKDIMGIKEMILDLKVSVERLEEETKENNINKKKKELGTSDGSYYKMKEKMEEVEV 60
          MENNEKDIMGIKEMILDLKVSVERLEEETKENNINKKKKELGTSDGSYYKMKEKMEEVEV
Sbjct: 1  MENNEKDIMGIKEMILDLKVSVERLEEETKENNINKKKKELGTSDGSYYKMKEKMEEVEV 60

Query: 61 MNNLGGGSNDKS 72
          MNNLGGGSNDKS
Sbjct: 61 MNNLGGGSNDKS 72

BLAST of IVF0022774 vs. NCBI nr
Match: KAA0052343.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 1.50e-19
Identity = 46/72 (63.89%), Postives = 58/72 (80.56%), Query Frame = 0

Query: 1  MENNEKDIMGIKEMILDLKVSVERLEEETKENNINKKKKELGTSDGSYYKMKEKMEEVEV 60
          MENNEK+ MGIKEMIL LK+S ERL EE KEN+ +++K++  TSDG+ YKMK KME+V+ 
Sbjct: 10 MENNEKETMGIKEMILALKMSTERLAEEMKENSSSRRKEKSSTSDGTNYKMKGKMEDVKA 69

Query: 61 MNNLGGGSNDKS 72
          MNN GGG N +S
Sbjct: 70 MNNPGGGLNGRS 81

BLAST of IVF0022774 vs. NCBI nr
Match: KAA0051854.1 (uncharacterized protein E6C27_scaffold60G002860 [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 2.18e-14
Identity = 42/69 (60.87%), Postives = 53/69 (76.81%), Query Frame = 0

Query: 4  NEKDIMGIKEMILDLKVSVERLEEETKENNINKKKKELGTSDGSYYKMKEKMEEVEVMNN 63
          +EK++  IKEMIL LK+SVERL +E KEN+ +K+++ELGTSDGS Y MK K+EEVE    
Sbjct: 13 HEKEMKRIKEMILALKMSVERLTDEMKENSNSKRREELGTSDGSSYMMKGKVEEVEATTT 72

Query: 64 LGGGSNDKS 72
            GGS DKS
Sbjct: 73 PSGGSFDKS 81

BLAST of IVF0022774 vs. NCBI nr
Match: KAA0042327.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15451.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 6.73e-13
Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 0

Query: 4  NEKDIMGIKEMILDLKVSVERLEEETKENNINKKKKELGTSDGSYYKMKEKMEEVEVMNN 63
          +EK++ GIKEMIL LK+SVERL +E +EN+ +K++KE   SDGS YKMK K+EEVE M  
Sbjct: 13 HEKEMTGIKEMILALKMSVERLTDEMRENSNSKRRKESSMSDGSNYKMKRKIEEVEAMTT 72

Query: 64 LGGGSNDKS 72
            GGS D+S
Sbjct: 73 PRGGSFDRS 81

BLAST of IVF0022774 vs. NCBI nr
Match: TYK21387.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 1.60e-12
Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 0

Query: 4  NEKDIMGIKEMILDLKVSVERLEEETKENNINKKKKELGTSDGSYYKMKEKMEEVEVMNN 63
          +EK++  IKEMIL LK+SVERL +E KEN+ +K+++ELGTSDGS Y MK K+EEVE    
Sbjct: 13 HEKEMKRIKEMILALKMSVERLTDEMKENSNSKRREELGTSDGSSYMMKGKVEEVEATTT 72

Query: 64 LGGGSNDKS 72
            GGS DK+
Sbjct: 73 PSGGSFDKT 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CZ523.7e-29100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U8V75.8e-1463.89Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TKV55.1e-1059.42Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U9355.1e-1060.87Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DCK91.1e-0959.42Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0031975.15.88e-40100.00uncharacterized protein E6C27_scaffold134G00650 [Cucumis melo var. makuwa] >TYK1... [more]
KAA0052343.11.50e-1963.89retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0051854.12.18e-1460.87uncharacterized protein E6C27_scaffold60G002860 [Cucumis melo var. makuwa][more]
KAA0042327.16.73e-1359.42retrotransposon protein [Cucumis melo var. makuwa] >TYK15451.1 retrotransposon p... [more]
TYK21387.11.60e-1259.42retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 8..28

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0022774.2IVF0022774.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding