IVF0022703 (gene) Melon (IVF77) v1

Overview
NameIVF0022703
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Locationchr12: 13454667 .. 13454984 (-)
RNA-Seq ExpressionIVF0022703
SyntenyIVF0022703
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCCGCTTGTCTCCAACTACTCGAGAGAGTAAGTAGCAAGAACATGGCTAAGACGCGCAAGGAGGAGTTTGGAGACAAACTTTACCTTAACGAGATAACTTTGAACATTTATGTCCCAAAAAGAGAACAAGTGTGGGTACTTGGCTCCGAGAGGTTGTCACCCTTAAAAGAGAAGTACTATAAGTCTTATAAGCAACAACTACTAGATATATATTGCTTAATGAAGTTCAGTCATTTGCATCACGAGAGGCGAGCAAGTGTGGCGTTTAAGGCACTGACAGGTACTCGCCTTAATCAAAAGCTCATTAACTAA

mRNA sequence

ATGGCCGCCGCTTGTCTCCAACTACTCGAGAGAGTAAGTAGCAAGAACATGGCTAAGACGCGCAAGGAGGAGTTTGGAGACAAACTTTACCTTAACGAGATAACTTTGAACATTTATGTCCCAAAAAGAGAACAAGTGTGGGTACTTGGCTCCGAGAGGTTGTCACCCTTAAAAGAGAAGTACTATAAGTCTTATAAGCAACAACTACTAGATATATATTGCTTAATGAAGTTCAGTCATTTGCATCACGAGAGGCGAGCAAGTGTGGCGTTTAAGGCACTGACAGGTACTCGCCTTAATCAAAAGCTCATTAACTAA

Coding sequence (CDS)

ATGGCCGCCGCTTGTCTCCAACTACTCGAGAGAGTAAGTAGCAAGAACATGGCTAAGACGCGCAAGGAGGAGTTTGGAGACAAACTTTACCTTAACGAGATAACTTTGAACATTTATGTCCCAAAAAGAGAACAAGTGTGGGTACTTGGCTCCGAGAGGTTGTCACCCTTAAAAGAGAAGTACTATAAGTCTTATAAGCAACAACTACTAGATATATATTGCTTAATGAAGTTCAGTCATTTGCATCACGAGAGGCGAGCAAGTGTGGCGTTTAAGGCACTGACAGGTACTCGCCTTAATCAAAAGCTCATTAACTAA

Protein sequence

MAAACLQLLERVSSKNMAKTRKEEFGDKLYLNEITLNIYVPKREQVWVLGSERLSPLKEKYYKSYKQQLLDIYCLMKFSHLHHERRASVAFKALTGTRLNQKLIN
Homology
BLAST of IVF0022703 vs. ExPASy TrEMBL
Match: A0A5D3C951 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1933G00010 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.7e-28
Identity = 72/104 (69.23%), Postives = 81/104 (77.88%), Query Frame = 0

Query: 1   MAAACLQLLERVSSKNMAKTRKEEFGDKLYLNEITLNIYVPKREQVWVLGSERLSPLKEK 60
           MA AC QLLERV+SK+MA T KEEF   L+++EIT    VPK EQVWVL +ERL PLKEK
Sbjct: 1   MARACRQLLERVTSKDMANTCKEEFKYLLHIDEITSITCVPKGEQVWVLSAERLPPLKEK 60

Query: 61  YYKSYKQQLLDIYCLMKFSHLHHERRASVAFKALTGTRLNQKLI 105
           YYKSYKQQL DIY L+KFSHLH +RRASV FKAL G  LN+  I
Sbjct: 61  YYKSYKQQLQDIYGLVKFSHLHPKRRASVMFKALRGAHLNRTTI 104

BLAST of IVF0022703 vs. ExPASy TrEMBL
Match: A0A5D3CY29 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00960 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-05
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 0

Query: 8   LLERVSSKNMAKTRKEEFGDKLYLNEITLNIYVPKREQVWVLGSERLSPLKEKYYKSYK 67
           L+ER SSK++    +EEFGD L+  +IT  I  P+R QVW +G+ERL  L EK+Y  YK
Sbjct: 89  LVERPSSKDVDNECQEEFGDNLHFGKITSIICTPERGQVWAIGAERLLFLIEKFYTFYK 147

BLAST of IVF0022703 vs. ExPASy TrEMBL
Match: A0A5D3DDG5 (Cytochrome b561 and DOMON domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00260 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.2e-05
Identity = 27/44 (61.36%), Postives = 35/44 (79.55%), Query Frame = 0

Query: 10 ERVSSKNMAKTRKEEFGDKLYLNEITLNIYVPKREQVWVLGSER 54
          ++ SSK+MA   KE+FGD+LYL++IT  I VPK EQVWV G+ER
Sbjct: 38 QKASSKDMANACKEKFGDELYLSKITSIICVPKGEQVWVYGTER 81

BLAST of IVF0022703 vs. NCBI nr
Match: TYK07860.1 (uncharacterized protein E5676_scaffold1933G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 136 bits (342), Expect = 1.20e-37
Identity = 72/104 (69.23%), Postives = 81/104 (77.88%), Query Frame = 0

Query: 1   MAAACLQLLERVSSKNMAKTRKEEFGDKLYLNEITLNIYVPKREQVWVLGSERLSPLKEK 60
           MA AC QLLERV+SK+MA T KEEF   L+++EIT    VPK EQVWVL +ERL PLKEK
Sbjct: 1   MARACRQLLERVTSKDMANTCKEEFKYLLHIDEITSITCVPKGEQVWVLSAERLPPLKEK 60

Query: 61  YYKSYKQQLLDIYCLMKFSHLHHERRASVAFKALTGTRLNQKLI 104
           YYKSYKQQL DIY L+KFSHLH +RRASV FKAL G  LN+  I
Sbjct: 61  YYKSYKQQLQDIYGLVKFSHLHPKRRASVMFKALRGAHLNRTTI 104

BLAST of IVF0022703 vs. NCBI nr
Match: KAA0032002.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK16823.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 2.23e-08
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 0

Query: 8   LLERVSSKNMAKTRKEEFGDKLYLNEITLNIYVPKREQVWVLGSERLSPLKEKYYKSYK 66
           L+ER SSK++    +EEFGD L+  +IT  I  P+R QVW +G+ERL  L EK+Y  YK
Sbjct: 89  LVERPSSKDVDNECQEEFGDNLHFGKITSIICTPERGQVWAIGAERLLFLIEKFYTFYK 147

BLAST of IVF0022703 vs. NCBI nr
Match: KAA0026294.1 (cytochrome b561 and DOMON domain-containing protein [Cucumis melo var. makuwa] >TYK21490.1 cytochrome b561 and DOMON domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 3.98e-07
Identity = 27/44 (61.36%), Postives = 35/44 (79.55%), Query Frame = 0

Query: 10 ERVSSKNMAKTRKEEFGDKLYLNEITLNIYVPKREQVWVLGSER 53
          ++ SSK+MA   KE+FGD+LYL++IT  I VPK EQVWV G+ER
Sbjct: 38 QKASSKDMANACKEKFGDELYLSKITSIICVPKGEQVWVYGTER 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C9512.7e-2869.23Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CY291.4e-0550.85Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3DDG54.2e-0561.36Cytochrome b561 and DOMON domain-containing protein OS=Cucumis melo var. makuwa ... [more]
Match NameE-valueIdentityDescription
TYK07860.11.20e-3769.23uncharacterized protein E5676_scaffold1933G00010 [Cucumis melo var. makuwa][more]
KAA0032002.12.23e-0850.85Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK16823.1 Tran... [more]
KAA0026294.13.98e-0761.36cytochrome b561 and DOMON domain-containing protein [Cucumis melo var. makuwa] >... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0022703.1IVF0022703.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane