IVF0022702 (gene) Melon (IVF77) v1

Overview
NameIVF0022702
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag-pol polyprotein
Locationchr10: 24941318 .. 24941835 (-)
RNA-Seq ExpressionIVF0022702
SyntenyIVF0022702
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCCATTAATGTTATTGTGGATGATCATAGCAAAATGTCCAATAGTAGTTTTGATGAAGAAGATGGACTTTTCTGGGTTAGGAAATCCCAAATACCAAACCTTCTGTTTTAGCATATTCCTCTTTAATTGAAGATAGCTCGTCTTATCGACCTAGTGAAGATAGTGTAACTATTCCAACAGTTATCACCTTAGCTGATCATCTTGAAATCAGCTCTAGTGAATGTTCAATATTTGACTACCAACAGACAACAGAGCACTCTTCTCAAAATGATAATACTGATGTAACTAACTCTACTGAGTCCTCCATGCAGAAATTGGTACCCTCCACTCACATAGCTAAGAATCATCCTTCTAATGCCATTATTGGGGATGTTTGAAGTGGTATTATCGCGCGAAAGAAGGAAAGAAGAGATTATGCAAAAATGGTTGCAAATATGTGTTATACCTCCACCATGGAACCCACTACTGTCACTACTGCTCTCACTGATGAACACTGGATCTTGATAATGTAG

mRNA sequence

ATGGAATCCATTAATGTTATTGTGGATGATCATAGCAAAATGTCCAATAGTAGTTTTGATGAAGAAGATGGACTTTTCTGGGTTAGGAAATCCCAAATACCAAACCTTCTCTCGTCTTATCGACCTAGTGAAGATAGTGTAACTATTCCAACAGTTATCACCTTAGCTGATCATCTTGAAATCAGCTCTAGTGAATGTTCAATATTTGACTACCAACAGACAACAGAGCACTCTTCTCAAAATGATAATACTGATGTAACTAACTCTACTGAGTCCTCCATGCAGAAATTGGTACCCTCCACTCACATAGCTAAGAATCATCCTTCTAATGCCATTATTGGGGATGAAAGAAGAGATTATGCAAAAATGGTTGCAAATATGTGTTATACCTCCACCATGGAACCCACTACTGTCACTACTGCTCTCACTGATGAACACTGGATCTTGATAATGTAG

Coding sequence (CDS)

ATGGAATCCATTAATGTTATTGTGGATGATCATAGCAAAATGTCCAATAGTAGTTTTGATGAAGAAGATGGACTTTTCTGGGTTAGGAAATCCCAAATACCAAACCTTCTCTCGTCTTATCGACCTAGTGAAGATAGTGTAACTATTCCAACAGTTATCACCTTAGCTGATCATCTTGAAATCAGCTCTAGTGAATGTTCAATATTTGACTACCAACAGACAACAGAGCACTCTTCTCAAAATGATAATACTGATGTAACTAACTCTACTGAGTCCTCCATGCAGAAATTGGTACCCTCCACTCACATAGCTAAGAATCATCCTTCTAATGCCATTATTGGGGATGAAAGAAGAGATTATGCAAAAATGGTTGCAAATATGTGTTATACCTCCACCATGGAACCCACTACTGTCACTACTGCTCTCACTGATGAACACTGGATCTTGATAATGTAG

Protein sequence

MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQIPNLLSSYRPSEDSVTIPTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNHPSNAIIGDERRDYAKMVANMCYTSTMEPTTVTTALTDEHWILIM
Homology
BLAST of IVF0022702 vs. ExPASy TrEMBL
Match: A0A5A7UDN6 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2277G00230 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 8.1e-50
Identity = 112/126 (88.89%), Postives = 114/126 (90.48%), Query Frame = 0

Query: 1   MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQ--IPNLL---------SSYRPSEDSVTI 60
           MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQ   P++L         SSYRPSEDSVTI
Sbjct: 107 MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQNTKPSVLAYSSLIEDSSSYRPSEDSVTI 166

Query: 61  PTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNHPS 116
           PTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNHPS
Sbjct: 167 PTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNHPS 226

BLAST of IVF0022702 vs. ExPASy TrEMBL
Match: A0A5A7VAZ1 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76G00160 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 9.9e-40
Identity = 99/167 (59.28%), Postives = 113/167 (67.66%), Query Frame = 0

Query: 1   MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQ-----------IPNLLSSYRPSEDSVTI 60
           ME INV +DDH + S S  DEEDGLFWV KSQ           +    SS R S+D+V +
Sbjct: 1   MEFINVNMDDHIQTSKSHVDEEDGLFWVNKSQATRPTIFENSSLTKETSSIRISKDNVLV 60

Query: 61  PTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNHPS 120
               T   HLE SSSECSIFDYQQT EHSSQND+ D+ NST+SSMQKL+PSTH+AKNHP 
Sbjct: 61  LAAATPVGHLENSSSECSIFDYQQTLEHSSQNDHQDLINSTKSSMQKLMPSTHVAKNHPL 120

Query: 121 NAIIGDER----------RDYAKMVANMCYTSTMEPTTVTTALTDEH 147
           NAIIGD R          R Y KMVAN+CYTSTME  T+T ALTD+H
Sbjct: 121 NAIIGDVRSGITTRKKKQRCYVKMVANVCYTSTMELATITDALTDDH 167

BLAST of IVF0022702 vs. ExPASy TrEMBL
Match: A0A5D3C707 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00800 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.7e-37
Identity = 97/161 (60.25%), Postives = 110/161 (68.32%), Query Frame = 0

Query: 1   MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQIPNLLSSYRPSEDSVTIPTVITLADHLE 60
           MESINVIVDD+S+ + S  DEEDG FW  KSQ   L          +++  VI     LE
Sbjct: 209 MESINVIVDDYSQTTKSRLDEEDGFFWADKSQAIRL--------TRLSLQLVI-----LE 268

Query: 61  ISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNHPSNAIIGD----- 120
           IS SECSI DYQQT  HSSQND TDV NSTESSMQ L+ ST++AKNHP NAIIGD     
Sbjct: 269 ISLSECSISDYQQTPAHSSQNDPTDVNNSTESSMQNLMSSTYVAKNHPPNAIIGDARSDI 328

Query: 121 -----ERRDYAKMVANMCYTSTMEPTTVTTALTDEHWILIM 152
                E+ DYAKMVAN+C+TSTMEPTTVT AL D+ WIL M
Sbjct: 329 TTQKKEQSDYAKMVANVCFTSTMEPTTVTDALKDDQWILAM 356

BLAST of IVF0022702 vs. ExPASy TrEMBL
Match: A0A5A7SVT6 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold597G00080 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 7.9e-29
Identity = 83/174 (47.70%), Postives = 106/174 (60.92%), Query Frame = 0

Query: 1   MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQIPNLL-------------SSYRPSEDSV 60
           MES+NVI+DDH K++N S DEEDG  W   SQ                  SS   + +S+
Sbjct: 103 MESVNVIIDDHEKIANGSIDEEDGDIWALYSQKTKTSGSEQSSLTNDKDNSSSHSNVNSM 162

Query: 61  TIPTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNH 120
            +    T  DHL  S+SE S+ + QQT ++S       + ++  SSMQK+V  THIAKNH
Sbjct: 163 AVLIEPTSVDHLVDSTSEASVSNCQQTNDYS-----VKLPDTAGSSMQKIVQPTHIAKNH 222

Query: 121 PSNAIIGD----------ERRDYAKMVANMCYTSTMEPTTVTTALTDEHWILIM 152
           PS++IIGD          ER+ Y+KMVAN+CYTST+EPTTVT ALTDEHWIL M
Sbjct: 223 PSSSIIGDVHSSITTQKKERKYYSKMVANVCYTSTIEPTTVTAALTDEHWILAM 271

BLAST of IVF0022702 vs. ExPASy TrEMBL
Match: A0A5A7SQH0 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00180 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.5e-27
Identity = 83/174 (47.70%), Postives = 104/174 (59.77%), Query Frame = 0

Query: 1   MESINVIVDDHSKMSNSSFDEEDGLFW--------VRKSQIPNLL-----SSYRPSEDSV 60
           MESINVI+DDH K S  + +EED LFW          +S+  +L+     SS   + D +
Sbjct: 4   MESINVIIDDHGKTSKRNPNEEDKLFWGIYSQKIRTTRSKHSSLIENNGNSSSHSNIDGM 63

Query: 61  TIPTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNH 120
           T P      DH +  +SE S    QQT E  +Q     + ++  SS+QKL+P  HIAKNH
Sbjct: 64  TTPVEAISVDHFKACTSEASTSTSQQTNEFPTQ-----LPDAAGSSIQKLMPLIHIAKNH 123

Query: 121 PSNAIIGD----------ERRDYAKMVANMCYTSTMEPTTVTTALTDEHWILIM 152
           PSN+IIGD          E RDYAKMVAN+CYTST+EPT VT ALTDEHW+L M
Sbjct: 124 PSNSIIGDVQSGVTTRKKEMRDYAKMVANVCYTSTVEPTIVTGALTDEHWLLAM 172

BLAST of IVF0022702 vs. NCBI nr
Match: KAA0054113.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK29403.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 203 bits (516), Expect = 4.94e-63
Identity = 112/126 (88.89%), Postives = 114/126 (90.48%), Query Frame = 0

Query: 1   MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQI--PNLL---------SSYRPSEDSVTI 60
           MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQ   P++L         SSYRPSEDSVTI
Sbjct: 107 MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQNTKPSVLAYSSLIEDSSSYRPSEDSVTI 166

Query: 61  PTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNHPS 115
           PTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNHPS
Sbjct: 167 PTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNHPS 226

BLAST of IVF0022702 vs. NCBI nr
Match: KAA0065472.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK08714.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 169 bits (429), Expect = 1.01e-50
Identity = 100/167 (59.88%), Postives = 114/167 (68.26%), Query Frame = 0

Query: 1   MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQI--PNLL---------SSYRPSEDSVTI 60
           ME INV +DDH + S S  DEEDGLFWV KSQ   P +          SS R S+D+V +
Sbjct: 1   MEFINVNMDDHIQTSKSHVDEEDGLFWVNKSQATRPTIFENSSLTKETSSIRISKDNVLV 60

Query: 61  PTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNHPS 120
               T   HLE SSSECSIFDYQQT EHSSQND+ D+ NST+SSMQKL+PSTH+AKNHP 
Sbjct: 61  LAAATPVGHLENSSSECSIFDYQQTLEHSSQNDHQDLINSTKSSMQKLMPSTHVAKNHPL 120

Query: 121 NAIIGDER----------RDYAKMVANMCYTSTMEPTTVTTALTDEH 146
           NAIIGD R          R Y KMVAN+CYTSTME  T+T ALTD+H
Sbjct: 121 NAIIGDVRSGITTRKKKQRCYVKMVANVCYTSTMELATITDALTDDH 167

BLAST of IVF0022702 vs. NCBI nr
Match: KAA0049939.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK07671.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 162 bits (410), Expect = 1.86e-45
Identity = 97/161 (60.25%), Postives = 110/161 (68.32%), Query Frame = 0

Query: 1   MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQIPNLLSSYRPSEDSVTIPTVITLADHLE 60
           MESINVIVDD+S+ + S  DEEDG FW  KSQ   L          +++  VI     LE
Sbjct: 209 MESINVIVDDYSQTTKSRLDEEDGFFWADKSQAIRLTR--------LSLQLVI-----LE 268

Query: 61  ISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNHPSNAIIGD----- 120
           IS SECSI DYQQT  HSSQND TDV NSTESSMQ L+ ST++AKNHP NAIIGD     
Sbjct: 269 ISLSECSISDYQQTPAHSSQNDPTDVNNSTESSMQNLMSSTYVAKNHPPNAIIGDARSDI 328

Query: 121 -----ERRDYAKMVANMCYTSTMEPTTVTTALTDEHWILIM 151
                E+ DYAKMVAN+C+TSTMEPTTVT AL D+ WIL M
Sbjct: 329 TTQKKEQSDYAKMVANVCFTSTMEPTTVTDALKDDQWILAM 356

BLAST of IVF0022702 vs. NCBI nr
Match: KAA0032633.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK23515.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 130 bits (327), Expect = 3.92e-35
Identity = 83/174 (47.70%), Postives = 104/174 (59.77%), Query Frame = 0

Query: 1   MESINVIVDDHSKMSNSSFDEEDGLFW--------VRKSQIPNLL-----SSYRPSEDSV 60
           MESINVI+DDH K S  + +EED LFW          +S+  +L+     SS   + D +
Sbjct: 4   MESINVIIDDHGKTSKRNPNEEDKLFWGIYSQKIRTTRSKHSSLIENNGNSSSHSNIDGM 63

Query: 61  TIPTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNH 120
           T P      DH +  +SE S    QQT E  +Q     + ++  SS+QKL+P  HIAKNH
Sbjct: 64  TTPVEAISVDHFKACTSEASTSTSQQTNEFPTQ-----LPDAAGSSIQKLMPLIHIAKNH 123

Query: 121 PSNAIIGD----------ERRDYAKMVANMCYTSTMEPTTVTTALTDEHWILIM 151
           PSN+IIGD          E RDYAKMVAN+CYTST+EPT VT ALTDEHW+L M
Sbjct: 124 PSNSIIGDVQSGVTTRKKEMRDYAKMVANVCYTSTVEPTIVTGALTDEHWLLAM 172

BLAST of IVF0022702 vs. NCBI nr
Match: KAA0035372.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 134 bits (338), Expect = 2.85e-33
Identity = 83/174 (47.70%), Postives = 107/174 (61.49%), Query Frame = 0

Query: 1   MESINVIVDDHSKMSNSSFDEEDGLFWVRKSQIPNLLSSYRPS-------------EDSV 60
           MES+NVI+DDH K++N S DEEDG  W   SQ      S + S              +S+
Sbjct: 103 MESVNVIIDDHEKIANGSIDEEDGDIWALYSQKTKTSGSEQSSLTNDKDNSSSHSNVNSM 162

Query: 61  TIPTVITLADHLEISSSECSIFDYQQTTEHSSQNDNTDVTNSTESSMQKLVPSTHIAKNH 120
            +    T  DHL  S+SE S+ + QQT ++S +     + ++  SSMQK+V  THIAKNH
Sbjct: 163 AVLIEPTSVDHLVDSTSEASVSNCQQTNDYSVK-----LPDTAGSSMQKIVQPTHIAKNH 222

Query: 121 PSNAIIGD----------ERRDYAKMVANMCYTSTMEPTTVTTALTDEHWILIM 151
           PS++IIGD          ER+ Y+KMVAN+CYTST+EPTTVT ALTDEHWIL M
Sbjct: 223 PSSSIIGDVHSSITTQKKERKYYSKMVANVCYTSTIEPTTVTAALTDEHWILAM 271

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UDN68.1e-5088.89Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2277... [more]
A0A5A7VAZ19.9e-4059.28Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5D3C7072.7e-3760.25Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G... [more]
A0A5A7SVT67.9e-2947.70Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold597G... [more]
A0A5A7SQH01.5e-2747.70Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
Match NameE-valueIdentityDescription
KAA0054113.14.94e-6388.89gag-pol polyprotein [Cucumis melo var. makuwa] >TYK29403.1 gag-pol polyprotein [... [more]
KAA0065472.11.01e-5059.88putative mitochondrial protein [Cucumis melo var. makuwa] >TYK08714.1 putative m... [more]
KAA0049939.11.86e-4560.25gag-pol polyprotein [Cucumis melo var. makuwa] >TYK07671.1 gag-pol polyprotein [... [more]
KAA0032633.13.92e-3547.70putative mitochondrial protein [Cucumis melo var. makuwa] >TYK23515.1 putative m... [more]
KAA0035372.12.85e-3347.70gag-pol polyprotein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..93

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0022702.1IVF0022702.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding