IVF0022570 (gene) Melon (IVF77) v1

Overview
NameIVF0022570
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDUF4283 domain-containing protein
Locationchr12: 9777445 .. 9777876 (+)
RNA-Seq ExpressionIVF0022570
SyntenyIVF0022570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAACTTCTTTCTCTTTCTCTCCATTTCATGCAGACAAAGCCATTGTCACTTTCAAAGATCCAACACAAGCAACCCTTCTATGCAACAACAATGAATGGTCCACAATAGGAAGTTTTTATGTCAGATTTGAAAAATGGTCATTCAAAAAACACGCGGCCCCAATACTGGTTCCTAGCTACGGTGGATGGGTAAGCTTTAGAGGCATTCCTCTTTCAGCTTGGAAGACTGATACTTTCATCCAAATTGGGAATGCTTGTAGGGGCTTTCTGGATGTGGCTAAGGAAACAAAGACTAGAAAAAATCTTGTGGAAGCCAGAATCAAAATCAGATACAATTATTCTAGCTTCATACCAACAAATATAAGCATCAAAGACGACAACGGACACCTCTTCTTTGTTCAAGCAGTTACTCATGAAAATGGAAAGTGA

mRNA sequence

ATGGAAACTTCTTTCTCTTTCTCTCCATTTCATGCAGACAAAGCCATTGTCACTTTCAAAGATCCAACACAAGCAACCCTTCTATGCAACAACAATGAATGGTCCACAATAGGAAGTTTTTATGTCAGATTTGAAAAATGGTCATTCAAAAAACACGCGGCCCCAATACTGGTTCCTAGCTACGGTGGATGGGTAAGCTTTAGAGGCATTCCTCTTTCAGCTTGGAAGACTGATACTTTCATCCAAATTGGGAATGCTTGTAGGGGCTTTCTGGATGTGGCTAAGGAAACAAAGACTAGAAAAAATCTTGTGGAAGCCAGAATCAAAATCAGATACAATTATTCTAGCTTCATACCAACAAATATAAGCATCAAAGACGACAACGGACACCTCTTCTTTGTTCAAGCAGTTACTCATGAAAATGGAAAGTGA

Coding sequence (CDS)

ATGGAAACTTCTTTCTCTTTCTCTCCATTTCATGCAGACAAAGCCATTGTCACTTTCAAAGATCCAACACAAGCAACCCTTCTATGCAACAACAATGAATGGTCCACAATAGGAAGTTTTTATGTCAGATTTGAAAAATGGTCATTCAAAAAACACGCGGCCCCAATACTGGTTCCTAGCTACGGTGGATGGGTAAGCTTTAGAGGCATTCCTCTTTCAGCTTGGAAGACTGATACTTTCATCCAAATTGGGAATGCTTGTAGGGGCTTTCTGGATGTGGCTAAGGAAACAAAGACTAGAAAAAATCTTGTGGAAGCCAGAATCAAAATCAGATACAATTATTCTAGCTTCATACCAACAAATATAAGCATCAAAGACGACAACGGACACCTCTTCTTTGTTCAAGCAGTTACTCATGAAAATGGAAAGTGA

Protein sequence

METSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSYGGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTNISIKDDNGHLFFVQAVTHENGK
Homology
BLAST of IVF0022570 vs. ExPASy TrEMBL
Match: A0A5D3CUI3 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00540 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 3.5e-79
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0

Query: 1   METSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPS 60
           METSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPS
Sbjct: 1   METSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPS 60

Query: 61  YGGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPT 120
           YGGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPT
Sbjct: 61  YGGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPT 120

Query: 121 NISIKDDNGHLFFVQAVTHENGK 144
           NISIKDDNGHLFFVQAVTHENGK
Sbjct: 121 NISIKDDNGHLFFVQAVTHENGK 143

BLAST of IVF0022570 vs. ExPASy TrEMBL
Match: A0A5D3BLV7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005290 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 8.2e-44
Identity = 83/142 (58.45%), Postives = 102/142 (71.83%), Query Frame = 0

Query: 2   ETSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSY 61
           E SF+++ FHA+KA+V F     A LLC N  WST+G + VRFEKWS   HA P L+PSY
Sbjct: 283 EESFTYNAFHAEKALVHFSSNIPANLLCQNKGWSTVGKYSVRFEKWSPVYHATPKLIPSY 342

Query: 62  GGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTN 121
           GGW +FRGIPL  W   TF QIG AC G + VA+ET++ KNL+EARIK+RYNYS F+P N
Sbjct: 343 GGWTTFRGIPLHLWNMMTFQQIGKACEGLIKVAEETRSAKNLIEARIKVRYNYSGFLPAN 402

Query: 122 ISIKDDNGHLFFVQAVTHENGK 144
           + I D+ G+ FFVQ VTH  GK
Sbjct: 403 VRIFDNEGNKFFVQVVTHPEGK 424

BLAST of IVF0022570 vs. ExPASy TrEMBL
Match: A0A5D3DJE1 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001100 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 4.1e-43
Identity = 81/142 (57.04%), Postives = 101/142 (71.13%), Query Frame = 0

Query: 2   ETSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSY 61
           E SF+++ FHA+KA+V F     A LLC N  W+T+G + VRFEKWS   HA P L+PSY
Sbjct: 227 EESFTYNAFHAEKALVHFSSNIPANLLCQNKGWTTVGKYSVRFEKWSSAYHATPKLIPSY 286

Query: 62  GGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTN 121
           GGW +FRGIPL  W   TF QIG AC G + VA+ETK+ KNL+EARIK+RYNYS F+P N
Sbjct: 287 GGWTTFRGIPLHLWNMTTFQQIGKACGGLIKVAEETKSAKNLIEARIKVRYNYSGFLPAN 346

Query: 122 ISIKDDNGHLFFVQAVTHENGK 144
           + I D+ G+ F +Q VTH  GK
Sbjct: 347 VRIFDNEGNKFSIQVVTHPEGK 368

BLAST of IVF0022570 vs. ExPASy TrEMBL
Match: A0A5D3BSE0 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00040 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 5.3e-43
Identity = 81/142 (57.04%), Postives = 102/142 (71.83%), Query Frame = 0

Query: 2   ETSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSY 61
           E SF+++ FHA+KA+V F     A LLC N  W+T+G + VRFEKWS   HA P L+PSY
Sbjct: 229 EESFTYNAFHAEKALVHFSSNIPANLLCQNKGWTTVGKYSVRFEKWSSAYHATPKLIPSY 288

Query: 62  GGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTN 121
           GGW +FRGIPL  W   TF QIG AC G + VA+ET++ KNL+EARIK+RYNYS+F+P N
Sbjct: 289 GGWTTFRGIPLHLWNMTTFQQIGKACGGLIKVAEETRSAKNLIEARIKVRYNYSAFLPAN 348

Query: 122 ISIKDDNGHLFFVQAVTHENGK 144
           + I D+ G+ F VQ VTH  GK
Sbjct: 349 VRIFDNEGNKFSVQVVTHPEGK 370

BLAST of IVF0022570 vs. ExPASy TrEMBL
Match: A0A5A7U9E5 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00670 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.2e-42
Identity = 80/142 (56.34%), Postives = 100/142 (70.42%), Query Frame = 0

Query: 2   ETSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSY 61
           E SF+++ FHA+KA+V F     A LLC N  W+T+G + VRFEKW    HA+P L+PSY
Sbjct: 143 EESFTYNAFHAEKALVHFNSNVPANLLCQNKGWTTVGKYMVRFEKWDPASHASPKLIPSY 202

Query: 62  GGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTN 121
           GGW +FRGIPL  W   TF QIG AC G L VA+ETKT +NL+EA++KIRYNYS F+P  
Sbjct: 203 GGWTTFRGIPLHLWNMKTFQQIGKACGGLLKVAEETKTARNLIEAKLKIRYNYSGFLPAY 262

Query: 122 ISIKDDNGHLFFVQAVTHENGK 144
           + I D  G+ F VQA+TH  GK
Sbjct: 263 VKIFDQEGNKFVVQAITHSEGK 284

BLAST of IVF0022570 vs. NCBI nr
Match: KAA0065895.1 (hypothetical protein E6C27_scaffold538G00730 [Cucumis melo var. makuwa] >TYK15122.1 hypothetical protein E5676_scaffold259G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 301 bits (771), Expect = 2.65e-103
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0

Query: 1   METSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPS 60
           METSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPS
Sbjct: 1   METSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPS 60

Query: 61  YGGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPT 120
           YGGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPT
Sbjct: 61  YGGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPT 120

Query: 121 NISIKDDNGHLFFVQAVTHENGK 143
           NISIKDDNGHLFFVQAVTHENGK
Sbjct: 121 NISIKDDNGHLFFVQAVTHENGK 143

BLAST of IVF0022570 vs. NCBI nr
Match: TYJ99315.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 184 bits (467), Expect = 1.02e-50
Identity = 83/142 (58.45%), Postives = 102/142 (71.83%), Query Frame = 0

Query: 2   ETSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSY 61
           E SF+++ FHA+KA+V F     A LLC N  WST+G + VRFEKWS   HA P L+PSY
Sbjct: 283 EESFTYNAFHAEKALVHFSSNIPANLLCQNKGWSTVGKYSVRFEKWSPVYHATPKLIPSY 342

Query: 62  GGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTN 121
           GGW +FRGIPL  W   TF QIG AC G + VA+ET++ KNL+EARIK+RYNYS F+P N
Sbjct: 343 GGWTTFRGIPLHLWNMMTFQQIGKACEGLIKVAEETRSAKNLIEARIKVRYNYSGFLPAN 402

Query: 122 ISIKDDNGHLFFVQAVTHENGK 143
           + I D+ G+ FFVQ VTH  GK
Sbjct: 403 VRIFDNEGNKFFVQVVTHPEGK 424

BLAST of IVF0022570 vs. NCBI nr
Match: TYK23598.1 (hypothetical protein E5676_scaffold500G001100 [Cucumis melo var. makuwa])

HSP 1 Score: 182 bits (461), Expect = 1.44e-50
Identity = 81/142 (57.04%), Postives = 101/142 (71.13%), Query Frame = 0

Query: 2   ETSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSY 61
           E SF+++ FHA+KA+V F     A LLC N  W+T+G + VRFEKWS   HA P L+PSY
Sbjct: 227 EESFTYNAFHAEKALVHFSSNIPANLLCQNKGWTTVGKYSVRFEKWSSAYHATPKLIPSY 286

Query: 62  GGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTN 121
           GGW +FRGIPL  W   TF QIG AC G + VA+ETK+ KNL+EARIK+RYNYS F+P N
Sbjct: 287 GGWTTFRGIPLHLWNMTTFQQIGKACGGLIKVAEETKSAKNLIEARIKVRYNYSGFLPAN 346

Query: 122 ISIKDDNGHLFFVQAVTHENGK 143
           + I D+ G+ F +Q VTH  GK
Sbjct: 347 VRIFDNEGNKFSIQVVTHPEGK 368

BLAST of IVF0022570 vs. NCBI nr
Match: KAA0037444.1 (hypothetical protein E6C27_scaffold277G00300 [Cucumis melo var. makuwa] >TYK01918.1 hypothetical protein E5676_scaffold808G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 181 bits (460), Expect = 2.04e-50
Identity = 81/142 (57.04%), Postives = 102/142 (71.83%), Query Frame = 0

Query: 2   ETSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSY 61
           E SF+++ FHA+KA+V F     A LLC N  W+T+G + VRFEKWS   HA P L+PSY
Sbjct: 229 EESFTYNAFHAEKALVHFSSNIPANLLCQNKGWTTVGKYSVRFEKWSSAYHATPKLIPSY 288

Query: 62  GGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTN 121
           GGW +FRGIPL  W   TF QIG AC G + VA+ET++ KNL+EARIK+RYNYS+F+P N
Sbjct: 289 GGWTTFRGIPLHLWNMTTFQQIGKACGGLIKVAEETRSAKNLIEARIKVRYNYSAFLPAN 348

Query: 122 ISIKDDNGHLFFVQAVTHENGK 143
           + I D+ G+ F VQ VTH  GK
Sbjct: 349 VRIFDNEGNKFSVQVVTHPEGK 370

BLAST of IVF0022570 vs. NCBI nr
Match: KAA0050816.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK08529.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 180 bits (457), Expect = 7.48e-50
Identity = 80/142 (56.34%), Postives = 100/142 (70.42%), Query Frame = 0

Query: 2   ETSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSY 61
           E SF+++ FHA+KA+V F     A LLC N  W+T+G + VRFEKW    HA+P L+PSY
Sbjct: 143 EESFTYNAFHAEKALVHFNSNVPANLLCQNKGWTTVGKYMVRFEKWDPASHASPKLIPSY 202

Query: 62  GGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTN 121
           GGW +FRGIPL  W   TF QIG AC G L VA+ETKT +NL+EA++KIRYNYS F+P  
Sbjct: 203 GGWTTFRGIPLHLWNMKTFQQIGKACGGLLKVAEETKTARNLIEAKLKIRYNYSGFLPAY 262

Query: 122 ISIKDDNGHLFFVQAVTHENGK 143
           + I D  G+ F VQA+TH  GK
Sbjct: 263 VKIFDQEGNKFVVQAITHSEGK 284

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CUI33.5e-79100.00DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3BLV78.2e-4458.45LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3DJE14.1e-4357.04DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3BSE05.3e-4357.04DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7U9E51.2e-4256.34LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
Match NameE-valueIdentityDescription
KAA0065895.12.65e-103100.00hypothetical protein E6C27_scaffold538G00730 [Cucumis melo var. makuwa] >TYK1512... [more]
TYJ99315.11.02e-5058.45LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
TYK23598.11.44e-5057.04hypothetical protein E5676_scaffold500G001100 [Cucumis melo var. makuwa][more]
KAA0037444.12.04e-5057.04hypothetical protein E6C27_scaffold277G00300 [Cucumis melo var. makuwa] >TYK0191... [more]
KAA0050816.17.48e-5056.34LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK085... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 16..110
e-value: 7.5E-14
score: 51.5
NoneNo IPR availablePANTHERPTHR34427:SF5DUF4283 DOMAIN PROTEINcoord: 19..125
NoneNo IPR availablePANTHERPTHR34427DUF4283 DOMAIN PROTEINcoord: 19..125

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0022570.2IVF0022570.2mRNA