IVF0022427 (gene) Melon (IVF77) v1

Overview


Name	IVF0022427
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Cytochrome c oxidase subunit 3
Location	chr04: 8988561 .. 8988977 (+)
RNA-Seq Expression	IVF0022427
Synteny	IVF0022427

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCAATCCTTCTGGGAGTAACGGAAAATATAAATCCACCTTTGATTCGCTCCACATATTTGCAATGTGGAAGTCAATTGCGAGTATTTCATACTATTCAGTACTCAACTCAGTGTTCAAATTGCAACCGAGCAAAAGGCGGAATAGGGAAAGGAATGAGACACATCTTGCGACAAAAGCTACTCAAAATGAGGGGAGGAATGAAAAAGGAAAAAGTGAGCGGGCTTCTTCTCATTCTTCTTTGGCACCTACAGTAGAGATCGGAGGTATTTGGCCCCCAAAAGGGATTGGGGTTTTAGATCCTCGGCAAATCCCTTTTCTTAATATCCCTATTCTCCTTTCATCCGGAGCAGCCGTAACTTGGGCTCATCATGCTATACTCGTGGGGAAACTCTTCCACAGCAAGGACGGATGA

mRNA sequence

ATGGTCAATCCTTCTGGGAGTAACGGAAAATATAAATCCACCTTTGATTCGCTCCACATATTTGCAATGTGGAAGTCAATTGCGAGTATTTCATACTATTCAGTACTCAACTCAGTGTTCAAATTGCAACCGAGCAAAAGGCGGAATAGGGAAAGGAATGAGACACATCTTGCGACAAAAGCTACTCAAAATGAGGGGAGGAATGAAAAAGGAAAAAGTGAGCGGGCTTCTTCTCATTCTTCTTTGGCACCTACAGTAGAGATCGGAGGTATTTGGCCCCCAAAAGGGATTGGGGTTTTAGATCCTCGGCAAATCCCTTTTCTTAATATCCCTATTCTCCTTTCATCCGGAGCAGCCGTAACTTGGGCTCATCATGCTATACTCGTGGGGAAACTCTTCCACAGCAAGGACGGATGA

Coding sequence (CDS)

ATGGTCAATCCTTCTGGGAGTAACGGAAAATATAAATCCACCTTTGATTCGCTCCACATATTTGCAATGTGGAAGTCAATTGCGAGTATTTCATACTATTCAGTACTCAACTCAGTGTTCAAATTGCAACCGAGCAAAAGGCGGAATAGGGAAAGGAATGAGACACATCTTGCGACAAAAGCTACTCAAAATGAGGGGAGGAATGAAAAAGGAAAAAGTGAGCGGGCTTCTTCTCATTCTTCTTTGGCACCTACAGTAGAGATCGGAGGTATTTGGCCCCCAAAAGGGATTGGGGTTTTAGATCCTCGGCAAATCCCTTTTCTTAATATCCCTATTCTCCTTTCATCCGGAGCAGCCGTAACTTGGGCTCATCATGCTATACTCGTGGGGAAACTCTTCCACAGCAAGGACGGATGA

Protein sequence

MVNPSGSNGKYKSTFDSLHIFAMWKSIASISYYSVLNSVFKLQPSKRRNRERNETHLATKATQNEGRNEKGKSERASSHSSLAPTVEIGGIWPPKGIGVLDPRQIPFLNIPILLSSGAAVTWAHHAILVGKLFHSKDG

Homology

[Close]

BLAST of IVF0022427 vs. ExPASy Swiss-Prot
Match: Q03227 (Cytochrome c oxidase subunit 3 OS=Vicia faba OX=3906 GN=COX3 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.6e-25
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 75  RASSHSSLAPTVEIGGIWPPKGIGVLDPRQIPFLNIPILLSSGAAVTWAHHAILVGK 132
           RASSHSSLAPTVEIGGIWPPKGIGVLDPR+IPFLN PILLSSGAAVTWAHHAIL GK
Sbjct: 102 RASSHSSLAPTVEIGGIWPPKGIGVLDPREIPFLNTPILLSSGAAVTWAHHAILAGK 158

[Close]

BLAST of IVF0022427 vs. ExPASy Swiss-Prot
Match: P08745 (Cytochrome c oxidase subunit 3 OS=Oenothera berteroana OX=3950 GN=COX3 PE=3 SV=2)

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-23
Identity = 52/56 (92.86%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 76  ASSHSSLAPTVEIGGIWPPKGIGVLDPRQIPFLNIPILLSSGAAVTWAHHAILVGK 132
           ASSHSSLAPTVEIGGIWPPKGIGVLDP +IPFLN PILLSSGAAVTWAHHAIL GK
Sbjct: 103 ASSHSSLAPTVEIGGIWPPKGIGVLDPWEIPFLNTPILLSSGAAVTWAHHAILAGK 158

[Close]

BLAST of IVF0022427 vs. ExPASy Swiss-Prot
Match: P32808 (Cytochrome c oxidase subunit 3 OS=Helianthus annuus OX=4232 GN=COX3 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.5e-23
Identity = 52/57 (91.23%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 75  RASSHSSLAPTVEIGGIWPPKGIGVLDPRQIPFLNIPILLSSGAAVTWAHHAILVGK 132
           RASSHSSLAPTVEIGGIWPPKGI VLDPR+IPFLN PI LSSGAAVTWAHHAIL GK
Sbjct: 102 RASSHSSLAPTVEIGGIWPPKGIAVLDPREIPFLNTPIPLSSGAAVTWAHHAILAGK 158

[Close]

BLAST of IVF0022427 vs. ExPASy Swiss-Prot
Match: Q36952 (Cytochrome c oxidase subunit 3 OS=Aegilops columnaris OX=4493 GN=COX3 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.7e-22
Identity = 50/56 (89.29%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 76  ASSHSSLAPTVEIGGIWPPKGIGVLDPRQIPFLNIPILLSSGAAVTWAHHAILVGK 132
           ASSHSSLAPTVEIGGIWPPKGIGVLDP +IP LN PIL SSGAAVTWAHHAIL GK
Sbjct: 103 ASSHSSLAPTVEIGGIWPPKGIGVLDPWEIPLLNTPILPSSGAAVTWAHHAILAGK 158

[Close]

BLAST of IVF0022427 vs. ExPASy Swiss-Prot
Match: P09138 (Cytochrome c oxidase subunit 3 OS=Zea mays OX=4577 GN=COX3 PE=2 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 3.7e-22
Identity = 50/56 (89.29%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 76  ASSHSSLAPTVEIGGIWPPKGIGVLDPRQIPFLNIPILLSSGAAVTWAHHAILVGK 132
           ASSHSSLAPTVEIGGIWPPKGIGVLDP +IP LN PIL SSGAAVTWAHHAIL GK
Sbjct: 103 ASSHSSLAPTVEIGGIWPPKGIGVLDPWEIPLLNTPILPSSGAAVTWAHHAILAGK 158

[Close]

BLAST of IVF0022427 vs. ExPASy TrEMBL
Match: A0A5A7VC41 (Cytochrome c oxidase subunit 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00250 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.6e-57
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 23  MWKSIASISYYSVLNSVFKLQPSKRRNRERNETHLATKATQNEGRNEKGKSERASSHSSL 82
           MWKSIASISYYSVLNSVFKLQPSKRRNRERNETHLATKATQNEGRNEKGKSERASSHSSL
Sbjct: 1   MWKSIASISYYSVLNSVFKLQPSKRRNRERNETHLATKATQNEGRNEKGKSERASSHSSL 60

Query: 83  APTVEIGGIWPPKGIGVLDPRQIPFLNIPILLSSGAAVTWAHHAILVGKLFHSKDG 139
           APTVEIGGIWPPKGIGVLDPRQIPFLNIPILLSSGAAVTWAHHAILVGKLFHSKDG
Sbjct: 61  APTVEIGGIWPPKGIGVLDPRQIPFLNIPILLSSGAAVTWAHHAILVGKLFHSKDG 116

[Close]

BLAST of IVF0022427 vs. ExPASy TrEMBL
Match: A0A072TI35 (Cytochrome c oxidase subunit 3 OS=Medicago truncatula OX=3880 GN=MTR_0082s0160 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.7e-22
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 75  RASSHSSLAPTVEIGGIWPPKGIGVLDPRQIPFLNIPILLSSGAAVTWAHHAILVGK 132
           RASSHSSLAPTVEIGGIWPPKGIGVLDPR+IPFLN PILLSSGAAVTWAHHAIL GK
Sbjct: 102 RASSHSSLAPTVEIGGIWPPKGIGVLDPREIPFLNTPILLSSGAAVTWAHHAILAGK 158

[Close]

BLAST of IVF0022427 vs. ExPASy TrEMBL
Match: A0A072U895 (Cytochrome c oxidase subunit 3 OS=Medicago truncatula OX=3880 GN=MTR_6g032895 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.7e-22
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 75  RASSHSSLAPTVEIGGIWPPKGIGVLDPRQIPFLNIPILLSSGAAVTWAHHAILVGK 132
           RASSHSSLAPTVEIGGIWPPKGIGVLDPR+IPFLN PILLSSGAAVTWAHHAIL GK
Sbjct: 102 RASSHSSLAPTVEIGGIWPPKGIGVLDPREIPFLNTPILLSSGAAVTWAHHAILAGK 158

[Close]

BLAST of IVF0022427 vs. ExPASy TrEMBL
Match: A0A072TF83 (Cytochrome c oxidase subunit 3 (Fragment) OS=Medicago truncatula OX=3880 GN=MTR_0495s0020 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.7e-22
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 75  RASSHSSLAPTVEIGGIWPPKGIGVLDPRQIPFLNIPILLSSGAAVTWAHHAILVGK 132
           RASSHSSLAPTVEIGGIWPPKGIGVLDPR+IPFLN PILLSSGAAVTWAHHAIL GK
Sbjct: 19  RASSHSSLAPTVEIGGIWPPKGIGVLDPREIPFLNTPILLSSGAAVTWAHHAILAGK 75

[Close]

BLAST of IVF0022427 vs. ExPASy TrEMBL
Match: A0A126TGU6 (Cytochrome c oxidase subunit 3 OS=Medicago truncatula OX=3880 GN=cox3 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.7e-22
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 75  RASSHSSLAPTVEIGGIWPPKGIGVLDPRQIPFLNIPILLSSGAAVTWAHHAILVGK 132
           RASSHSSLAPTVEIGGIWPPKGIGVLDPR+IPFLN PILLSSGAAVTWAHHAIL GK
Sbjct: 102 RASSHSSLAPTVEIGGIWPPKGIGVLDPREIPFLNTPILLSSGAAVTWAHHAILAGK 158

[Close]

BLAST of IVF0022427 vs. NCBI nr
Match: KAA0063465.1 (cytochrome C oxidase subunit 3 [Cucumis melo var. makuwa] >TYJ95762.1 cytochrome C oxidase subunit 3 [Cucumis melo var. makuwa])

HSP 1 Score: 234 bits (598), Expect = 2.13e-77
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 23  MWKSIASISYYSVLNSVFKLQPSKRRNRERNETHLATKATQNEGRNEKGKSERASSHSSL 82
           MWKSIASISYYSVLNSVFKLQPSKRRNRERNETHLATKATQNEGRNEKGKSERASSHSSL
Sbjct: 1   MWKSIASISYYSVLNSVFKLQPSKRRNRERNETHLATKATQNEGRNEKGKSERASSHSSL 60

Query: 83  APTVEIGGIWPPKGIGVLDPRQIPFLNIPILLSSGAAVTWAHHAILVGKLFHSKDG 138
           APTVEIGGIWPPKGIGVLDPRQIPFLNIPILLSSGAAVTWAHHAILVGKLFHSKDG
Sbjct: 61  APTVEIGGIWPPKGIGVLDPRQIPFLNIPILLSSGAAVTWAHHAILVGKLFHSKDG 116

[Close]

BLAST of IVF0022427 vs. NCBI nr
Match: KEH15846.1 (cytochrome C oxidase subunit 3, partial [Medicago truncatula])

HSP 1 Score: 117 bits (293), Expect = 7.57e-31
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 75  RASSHSSLAPTVEIGGIWPPKGIGVLDPRQIPFLNIPILLSSGAAVTWAHHAILVGK 131
           RASSHSSLAPTVEIGGIWPPKGIGVLDPR+IPFLN PILLSSGAAVTWAHHAIL GK
Sbjct: 19  RASSHSSLAPTVEIGGIWPPKGIGVLDPREIPFLNTPILLSSGAAVTWAHHAILAGK 75

[Close]

BLAST of IVF0022427 vs. NCBI nr
Match: XP_039682841.1 (cytochrome c oxidase subunit 3-like [Medicago truncatula] >RHN50810.1 Cytochrome c oxidase subunit 3 [Medicago truncatula])

HSP 1 Score: 117 bits (293), Expect = 1.20e-29
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 75  RASSHSSLAPTVEIGGIWPPKGIGVLDPRQIPFLNIPILLSSGAAVTWAHHAILVGK 131
           RASSHSSLAPTVEIGGIWPPKGIGVLDPR+IPFLN PILLSSGAAVTWAHHAIL GK
Sbjct: 102 RASSHSSLAPTVEIGGIWPPKGIGVLDPREIPFLNTPILLSSGAAVTWAHHAILAGK 158

[Close]

BLAST of IVF0022427 vs. NCBI nr
Match: KEH25606.1 (cytochrome C oxidase subunit 3 [Medicago truncatula])

HSP 1 Score: 117 bits (293), Expect = 1.53e-29
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 75  RASSHSSLAPTVEIGGIWPPKGIGVLDPRQIPFLNIPILLSSGAAVTWAHHAILVGK 131
           RASSHSSLAPTVEIGGIWPPKGIGVLDPR+IPFLN PILLSSGAAVTWAHHAIL GK
Sbjct: 102 RASSHSSLAPTVEIGGIWPPKGIGVLDPREIPFLNTPILLSSGAAVTWAHHAILAGK 158

[Close]

BLAST of IVF0022427 vs. NCBI nr
Match: AWK59909.1 (cytochrome c oxidase subunit 3, partial [Sophora moorcroftiana])

HSP 1 Score: 117 bits (293), Expect = 2.09e-29
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 75  RASSHSSLAPTVEIGGIWPPKGIGVLDPRQIPFLNIPILLSSGAAVTWAHHAILVGK 131
           RASSHSSLAPTVEIGGIWPPKGIGVLDPR+IPFLN PILLSSGAAVTWAHHAIL GK
Sbjct: 86  RASSHSSLAPTVEIGGIWPPKGIGVLDPREIPFLNTPILLSSGAAVTWAHHAILAGK 142

[Close]

BLAST of IVF0022427 vs. TAIR 10
Match: AT2G07687.1 (Cytochrome c oxidase, subunit III )

HSP 1 Score: 103.2 bits (256), Expect = 1.7e-22
Identity = 49/56 (87.50%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 76  ASSHSSLAPTVEIGGIWPPKGIGVLDPRQIPFLNIPILLSSGAAVTWAHHAILVGK 132
           ASSHSSLAP VEIGGIWPPKGI VLDP +IPFLN PIL SSGAAVTWAHHAIL GK
Sbjct: 103 ASSHSSLAPAVEIGGIWPPKGIEVLDPWEIPFLNTPILPSSGAAVTWAHHAILAGK 158

[Close]

BLAST of IVF0022427 vs. TAIR 10
Match: ATMG00730.1 (cytochrome c oxidase subunit 3 )

HSP 1 Score: 103.2 bits (256), Expect = 1.7e-22
Identity = 49/56 (87.50%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 76  ASSHSSLAPTVEIGGIWPPKGIGVLDPRQIPFLNIPILLSSGAAVTWAHHAILVGK 132
           ASSHSSLAP VEIGGIWPPKGI VLDP +IPFLN PIL SSGAAVTWAHHAIL GK
Sbjct: 103 ASSHSSLAPAVEIGGIWPPKGIEVLDPWEIPFLNTPILPSSGAAVTWAHHAILAGK 158

The following BLAST results are available for this feature:

BLAST of IVF0022427 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q03227	4.6e-25	94.74	Cytochrome c oxidase subunit 3 OS=Vicia faba OX=3906 GN=COX3 PE=3 SV=1	[more]
P08745	1.1e-23	92.86	Cytochrome c oxidase subunit 3 OS=Oenothera berteroana OX=3950 GN=COX3 PE=3 SV=2	[more]
P32808	1.5e-23	91.23	Cytochrome c oxidase subunit 3 OS=Helianthus annuus OX=4232 GN=COX3 PE=3 SV=1	[more]
Q36952	3.7e-22	89.29	Cytochrome c oxidase subunit 3 OS=Aegilops columnaris OX=4493 GN=COX3 PE=3 SV=1	[more]
P09138	3.7e-22	89.29	Cytochrome c oxidase subunit 3 OS=Zea mays OX=4577 GN=COX3 PE=2 SV=2	[more]

BLAST of IVF0022427 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VC41	1.6e-57	100.00	Cytochrome c oxidase subunit 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A072TI35	1.7e-22	94.74	Cytochrome c oxidase subunit 3 OS=Medicago truncatula OX=3880 GN=MTR_0082s0160 P...	[more]
A0A072U895	1.7e-22	94.74	Cytochrome c oxidase subunit 3 OS=Medicago truncatula OX=3880 GN=MTR_6g032895 PE...	[more]
A0A072TF83	1.7e-22	94.74	Cytochrome c oxidase subunit 3 (Fragment) OS=Medicago truncatula OX=3880 GN=MTR_...	[more]
A0A126TGU6	1.7e-22	94.74	Cytochrome c oxidase subunit 3 OS=Medicago truncatula OX=3880 GN=cox3 PE=3 SV=1	[more]

BLAST of IVF0022427 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063465.1	2.13e-77	100.00	cytochrome C oxidase subunit 3 [Cucumis melo var. makuwa] >TYJ95762.1 cytochrome...	[more]
KEH15846.1	7.57e-31	94.74	cytochrome C oxidase subunit 3, partial [Medicago truncatula]	[more]
XP_039682841.1	1.20e-29	94.74	cytochrome c oxidase subunit 3-like [Medicago truncatula] >RHN50810.1 Cytochrome...	[more]
KEH25606.1	1.53e-29	94.74	cytochrome C oxidase subunit 3 [Medicago truncatula]	[more]
AWK59909.1	2.09e-29	94.74	cytochrome c oxidase subunit 3, partial [Sophora moorcroftiana]	[more]

BLAST of IVF0022427 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07687.1	1.7e-22	87.50	Cytochrome c oxidase, subunit III	[more]
ATMG00730.1	1.7e-22	87.50	cytochrome c oxidase subunit 3	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000298	Cytochrome c oxidase subunit III-like	PFAM	PF00510	COX3	coord: 78..131 e-value: 2.7E-18 score: 66.8
IPR000298	Cytochrome c oxidase subunit III-like	PROSITE	PS50253	COX3	coord: 79..138 score: 10.051442
IPR013833	Cytochrome c oxidase, subunit III, 4-helical bundle	GENE3D	1.20.120.80		coord: 75..137 e-value: 5.3E-8 score: 34.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..82
None	No IPR available	PANTHER	PTHR11403:SF7	CYTOCHROME C OXIDASE SUBUNIT 3	coord: 76..131
IPR024791	Cytochrome c oxidase subunit III	PANTHER	PTHR11403	CYTOCHROME C OXIDASE SUBUNIT III	coord: 76..131
IPR035973	Cytochrome c oxidase subunit III-like superfamily	SUPERFAMILY	81452	Cytochrome c oxidase subunit III-like	coord: 78..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0022427.1	IVF0022427.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen
biological_process	GO:1902600	proton transmembrane transport
biological_process	GO:0019646	aerobic electron transport chain
biological_process	GO:0022904	respiratory electron transport chain
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0004129	cytochrome-c oxidase activity
molecular_function	GO:0009055	electron transfer activity