IVF0022412 (gene) Melon (IVF77) v1

Overview


Name	IVF0022412
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	DNA-directed RNA polymerases I and III subunit RPAC2
Location	chr12: 1398208 .. 1403146 (-)
RNA-Seq Expression	IVF0022412
Synteny	IVF0022412

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTAGCGCATTCAATCCCCCTTCGACAGTTCGACGTTCACATTTCGTAATCCCTTCGGCGATAAAATTCCGGCGACCTTTACATTCCGCCGGCGGCCTTTGCACATTTAGATCGTAAGTTCGACGGCACGATTCGCCTTTACACTTTCCAATCGCAAGTTCGACGGACTTCACATTCTGGGTTCTTCATCTTGTTTTGTCGGGTTCTTCATCTTGTTTTGTCCAAGGTTTGTTCATTGTTCCCATCTGACCTAACTTTCATTTTTTTTTTTTCTAATTGTTTTTTTGCTTTGAAAAATACTGCCGGAGATATTAATGATTTTGAGCAATATTTTGTTCAAACCTCAGTGTGTATTATTATTATTATTTTCAGCTTATTAATTCTAATCACATAGAAAAATAATAGAAATCCAAAGATTTTTCATGTGATGAATTAGATCCAAAAACATCCTTTGTAGATGATTTTATTTGTGGGGTGGCTTATGGAATTGAATATTTAGAAGTGTTTATAAAACAGGGGTTTGGGGGAGTACGTGCACTGTTTCTTTGACTCTATTTTCTTTTAAATTAAAGAGTAAGATTTTAGGTTAATTGATATATAGTTCAAAGTGCCATTCTTGTATTGTTACATTGCTGTTGAGTGAGTGATGAGAAGACCGGCCGACCATAAATTTGGATCTCGGAAACACTAATTTTGGTCGAACATCATTATTAAATTAACTAAAGTACTCTATTTTATCAATTGGACAGTGCCAAAGGTTGTGTGTCATTATAAATTAATCTAAAAATTAAGGCTTTAGTTGAATAGTTATACAATCATGTAATTTTAAGTTCTAATGCTTGTATAAATTTGAGGAGTCATTTTGGTCCATGGTGGACATGGCGCAATGACACCAATGGAAATTTTTTTTATTGAACTTTGAACATTTTAATGTATTTTTAGTGGACATTATTTAATTTTGAACTTTTGAATCTATTTTTCAATTTGAATGGACATTATTAGACATTATCGACATCCTATTTTATGTGATTATTACTTTTTATATCAATTTGAATTTTTGAATGTATTTTTAAATTTTAATGGACATTGCTGATTAATTTTTTTTAATGATTTTGAACTTTTAAATGAATATTATTGTAAATTTCGAATTTGAAAAGAATATTAAAATTTGAGTTGAAAGACTATGAAAATGATGAAAATTAAATTCTTAGCGATATAAAATTCTAAAATATAATATAATTGAAAAAAATACCAACCCGTCAATCCAACTCGGCCTAACCCGGTCACTTAGGGTTGGTCCACATTTTTTGGTTGGGTTGACCCTTGAGTATTGAATCAATAGGGTTCAATTTTTCCCAACCCGGTCACTTAGGGTTGGTCCACATTTTTTCTCCAACCCGGCTTATGTACATCCTAGTACTTTCAATGTATCAAAACTCAGGAATCGGATTTTGGACGGTTCGGTTCAAACAGAACCACTCGGCTTGGTGTCAGTTCAAACGGACTGGCGGGACCGAATCATCAAATCAAAAGGGCCTAAACCTTATACCCCATACATCTTTTTCGTTTTTGTGATTTATTCTCTCTCCCAGCGTCTCTGCTCTCCAACTCACCGGCTGGCCGGCCACCGACCGCAACTACTTGATCTTATCGCCATTCTTCTCTCTCTTGGTAATCAGTTCTCTCTCGTATATACATATATGTGTATATATATGTATGTATTTATGTATGGTCAAGACACCTATCAACAAGTGAGCTATGCGAATGTTTGTTGCTTATTCATGTGTGTGTAAGCAATAGCTGTGTGGCATTGTTGAATTGAGTGATTTTTGCAGTTTTGGTTAGGAAGAATCTAATGGAATTTATGTTAAAAGATCGGTATTTCAAGACATCTAACTCTAGGTTATTTTTTCAATGTAATTTTCTTTGTGTTTAGGGCTATGTTAAAGTATGGTGCTGACATGAACTAAAGAATAGTGAATTGATCTGGAATTTTACTCATTAGTACTATCCTATAAGGGGAACTAGAATACATGAAAGAGGCCCTACGCTGCATGCCCAAAACCTGAAAAGTGAACTTAATGTTGTATTAGTTTTGGTTCACCATATCTGAATGTTATCGTGAAAGAGGTGATGATACTATTGGAGTTAGCTTAAGATCTCCTAAGTGGTAAGATTGAAACAGATTTAATCATGCCAATTTGATCATCGGTTCTTTTTAGATTAAAAAACTAATAGGTAGCTCTCTTGTAAAAGTGATGCCTTGTAAAAGTGGTTTCTCAAGGCACTCTATGAAACTAGACATGTTACTCTAACTCTTACATTCTGTTAAGAGAGTTGCAGTCAATTCTCCCTAAAAGTGTAATTGATAGAAAAGAATGAATGAGTAGTCATATATTTATTGCTCAATAGTGCATTCAAATCTTCTTCATACTTAGACCTAACACTTCAGTGGCTTCTCTTTCTAGCCTTTTAGGAGTAACATCCATACAAGTAAAGCTTGTAAGGATAGTAATATAGTCTTGACGAAATAACTCATCAAAATTTCTTCTTCAAGCTACGTATATGTATGTGCTATAGATCATGGAGGTTCGTGGGAATAGTTGAAGAATCATGAAAGCAGTCTAGCTAATCTTACATCCCTGCACTTTTGTTAATGCCCGTAGATTGATATTTCAATTCTTAAGAGTTGGTGGAAAAGAGATTTCAACTTCTTGGCTCCATTGGTTTTGTAGAATTTTGTTTTTTTTTCCTTGCGTTATCAATTTTTTGCTATTTTTGTAGACTTTTGGTTTATTTTCCTTGATGTTCTCAATTTATTTGCCTTCATTTTTAATCAGGATGTTGGTTTTGTCTGGTTTTTCTTTTATTTATTTATTTATTATTATTATTATTATTTTGTTAGCAATGGAACATGGATCCTTTACAGATGAGACCAAATCAACATTTTCTATGGCTGATGAAGATCATACACTTGCAAATGCTCTCAGATACACTTTGAATCAAGAGTAGGAGCTCTTATTCAGTTATTCTTGAGTGAATACTTTGAAATGTCAACGCTCATTTTTTTAACCATTTCATCTTGCTATTAATTCATGACATTAATAATTAAGTAGATTCTTGGTTCTTGTGAACATATAATTCACAAGGTCCTTAAAGAATTATTTAGGTTCTTGGATAATCCATGAGGCATAAATTGATAAATAATGTACAGCCATTGCATGCGTTAATGTGCGTTCTTTCATTGTCCATCCAGAAGAGTTATAAATATGTTGACATTTTTTTCACCTATTAGAGCAATAGGAATTGATCATTTGGTTGTGGTTTCTTTCCCCTGTTAAAAAAAGCTGGTTTAGATTGTTGTTATACTTTAGTAAACCATATCTGATATACTTTTAAATAACTTGCAATATCATCTGGCAGTCCAAGAGTGACATTCTGTGGGTACAGCATCCCTCATCCTTCAGATAATCGAGTTAATATTAGAGTCCAGACAACAGGTAATATTTTAGGTTGTTCGACTCTCTAATTGGTTCACATTTCAGGAATTTTTTTCTAATGATTGGATTTGTTCTATCTTGATTTTTCTTCTTTATTTACATCTAATTTATGCATTCATGAGATATATAGCTTTTGGATCCATGCGAAGTCCGATCCTTGTAAGAAATTTTTTTTCCAACAAAGTCGCCTTTTTTTTTAGAACACATGTTGGATCCTTGTAGCTTTGCTAGAACCCGTTATTAAATTAAATAGAACTCAAGTAGACAGTTCTACAACATATAGAACTGACCCTGTTCAAGTAAGGTCATGGTAAAAAATAAATTTTAGTACTTGAACTTAGGGTTCTATAACTTTAACAAGATTCAATTATTTGTCCAAAATTTGAATAGCTATTGTACGGAGTTCTTACCATCAACACTGGTAACTCACATTGACATGATATATGTATTCGACAAATATTAGTTGATTAGGTGTAACATGACAGAAAAATAGTAGGAAGTATATAACTATAGAAAATAATATTAGCACATAAAAGGGATTTGATACGTTGCTTTGAAAAGATAGTATATTGCATATGCTTGTTTATTTTATTCAATTATCCACTTTTTTCCGCATTACAATGTTAATAAGTATGACTACACATTATTAATTACACTTCAAAGTTTGAAAGCCATATTTAGAACTTTTTAAAATGATAATATACCTATTAGGTACAGTAGATCTCAAGAACATAGTTGTACAACCTAGAGAATAGATCCTATTCAAGTAGGGTCATAGATCTATAATTTAATCTTAAACATATATGCATGCCCATTTGCAATTGTAAAGTAAAACCCAACGTACCAAGATGTTTGAGGTTGAGGCCTAAACAAATAGTGTCACGAATGAATGGTCTTTACTCTTTCTCCATGGTTGGATTTGTTGAACCCAGTGATCTGCAGTTGAAAGTAGACAAAGCTATTATTGATTACTAGGGAAAAGCAAAGCACATGGGAAAATGGTAGGGGCAATATAGCAAACAGAAGGCTATTTATTGAAGTGACTATGCATTATTAGTAGCATTAGTAATAGCATTAGTGATCACTGATGAAAGGGGTTTCTGATTGAACATGGCAGGTGATCCTGCTAGAGAAGTTTTGAAAGATGCTTGTCAGAACTTGATGGTGGTGTGTCAGCATGTGAGGAACACATTTGACAAGGCTGTGCTTGATTTCAATCTCACCAAAGCAAAAGAAGAACCTGAGGGAGACATTAATATCGAATAGAATGGGACCTTTGTTTTTTCTTTGCCTTGTAATTTTACCCTTTTTTTTTTTGTTAGTTTACAGTTTATTGAGATGGATTTGTTAGAAACAGATTAATTCCATTGAATTTTGCTTGCGTTTATTGGTACTCAACTGAGAGCTTATCCCTCCCTTCAGGGGTTTCATGTTAAAT

mRNA sequence

CTTTAGCGCATTCAATCCCCCTTCGACAGTTCGACGTTCACATTTCGTAATCCCTTCGGCGATAAAATTCCGGCGACCTTTACATTCCGCCGGCGGCCTTTGCACATTTAGATCGTAAGTTCGACGGCACGATTCGCCTTTACACTTTCCAATCGCAAGTTCGACGGACTTCACATTCTGGGTTCTTCATCTTGTTTTGTCGGGTTCTTCATCTTGTTTTGTCCAAGCAATGGAACATGGATCCTTTACAGATGAGACCAAATCAACATTTTCTATGGCTGATGAAGATCATACACTTGCAAATGCTCTCAGATACACTTTGAATCAAGATCCAAGAGTGACATTCTGTGGGTACAGCATCCCTCATCCTTCAGATAATCGAGTTAATATTAGAGTCCAGACAACAGGTGATCCTGCTAGAGAAGTTTTGAAAGATGCTTGTCAGAACTTGATGGTGGTGTGTCAGCATGTGAGGAACACATTTGACAAGGCTGTGCTTGATTTCAATCTCACCAAAGCAAAAGAAGAACCTGAGGGAGACATTAATATCGAATAGAATGGGACCTTTGTTTTTTCTTTGCCTTGTAATTTTACCCTTTTTTTTTTTGTTAGTTTACAGTTTATTGAGATGGATTTGTTAGAAACAGATTAATTCCATTGAATTTTGCTTGCGTTTATTGGTACTCAACTGAGAGCTTATCCCTCCCTTCAGGGGTTTCATGTTAAAT

Coding sequence (CDS)

ATGGAACATGGATCCTTTACAGATGAGACCAAATCAACATTTTCTATGGCTGATGAAGATCATACACTTGCAAATGCTCTCAGATACACTTTGAATCAAGATCCAAGAGTGACATTCTGTGGGTACAGCATCCCTCATCCTTCAGATAATCGAGTTAATATTAGAGTCCAGACAACAGGTGATCCTGCTAGAGAAGTTTTGAAAGATGCTTGTCAGAACTTGATGGTGGTGTGTCAGCATGTGAGGAACACATTTGACAAGGCTGTGCTTGATTTCAATCTCACCAAAGCAAAAGAAGAACCTGAGGGAGACATTAATATCGAATAG

Protein sequence

MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEEPEGDINIE

Homology

[Close]

BLAST of IVF0022412 vs. ExPASy Swiss-Prot
Match: Q5XK67 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Xenopus laevis OX=8355 GN=polr1d PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.6e-17
Identity = 41/90 (45.56%), Postives = 60/90 (66.67%), Query Frame = 0


Query: 8   DETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDPAREV 67
           +E+  TF + +EDHTL N+LRY + ++P V FCGYSI HPS+ ++N R+QT  G PA E 
Sbjct: 20  EESCVTFVLHEEDHTLGNSLRYMVMKNPEVEFCGYSITHPSETKINFRIQTRNGIPAVEP 79

Query: 68  LKDACQNLMVVCQHVRNTFDKAVLDFNLTK 97
            +     L+ VCQHV NTF+ ++ ++   K
Sbjct: 80  FRRGLNELVDVCQHVLNTFETSIKEYKEQK 109

[Close]

BLAST of IVF0022412 vs. ExPASy Swiss-Prot
Match: P97304 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Mus musculus OX=10090 GN=Polr1d PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.8e-17
Identity = 44/103 (42.72%), Postives = 64/103 (62.14%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           M   + TD    TF + +EDHTL N LRY + ++P V FCGY+  HPS++++N+R+QT G
Sbjct: 29  MVQAAGTDRQCVTFVLHEEDHTLGNCLRYIIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88

Query: 61  D-PAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKA-KEEP 102
             PA E  +     L+ VCQHV   F+ ++ D+   KA K+EP
Sbjct: 89  ALPAVEPFQKGLNELLNVCQHVLVKFEASIKDYKAKKASKKEP 131

[Close]

BLAST of IVF0022412 vs. ExPASy Swiss-Prot
Match: P0DPB6 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo sapiens OX=9606 GN=POLR1D PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.2e-17
Identity = 42/98 (42.86%), Postives = 62/98 (63.27%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           M   + TD    TF + +EDHTL N+LRY + ++P V FCGY+  HPS++++N+R+QT G
Sbjct: 29  MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88

Query: 61  D-PAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKA 98
             PA E  +     LM VCQHV + F+ ++ D+   KA
Sbjct: 89  TLPAVEPFQRGLNELMNVCQHVLDKFEASIKDYKDQKA 126

[Close]

BLAST of IVF0022412 vs. ExPASy Swiss-Prot
Match: Q1RMG8 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Bos taurus OX=9913 GN=POLR1D PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.4e-16
Identity = 41/98 (41.84%), Postives = 63/98 (64.29%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           M   + TD    TF + +EDHTL N+LRY + ++P V FCGY+  HPS++++N+R+QT G
Sbjct: 29  MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88

Query: 61  D-PAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKA 98
             PA E  +    +LM VCQHV + F+ ++ ++   KA
Sbjct: 89  ALPAVEPFQRGLTDLMNVCQHVLDKFEASIKEYKDQKA 126

[Close]

BLAST of IVF0022412 vs. ExPASy Swiss-Prot
Match: Q6DRI4 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Danio rerio OX=7955 GN=polr1d PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.1e-16
Identity = 44/94 (46.81%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 8   DETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDPAREV 67
           DE   TF + +EDHTL N+LRY + +   V FCGYSI HPS++++N R+QT  G PA E 
Sbjct: 19  DEGCVTFVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQTRDGVPASEP 78

Query: 68  LKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEE 101
           L++   NL  VC+HV  TF+  + +F   K +EE
Sbjct: 79  LRNGLNNLTDVCKHVLQTFEARMKEF---KEQEE 109

[Close]

BLAST of IVF0022412 vs. ExPASy TrEMBL
Match: A0A1S3C5G1 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucumis melo OX=3656 GN=LOC103497108 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 9.2e-56
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEEPEGDINIE 109
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEEPEGDINIE
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEEPEGDINIE 108

[Close]

BLAST of IVF0022412 vs. ExPASy TrEMBL
Match: A0A5D3BBZ7 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001620 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 9.2e-56
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEEPEGDINIE 109
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEEPEGDINIE
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEEPEGDINIE 108

[Close]

BLAST of IVF0022412 vs. ExPASy TrEMBL
Match: A0A5A7SR68 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00190 PE=3 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 3.5e-55
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEEPEGDINIE 109
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEEPEGDI+IE
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEEPEGDISIE 108

[Close]

BLAST of IVF0022412 vs. ExPASy TrEMBL
Match: A0A0A0LV21 (RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G527910 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.1e-52
Identity = 103/108 (95.37%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDETKSTFSMADEDHTLANALR TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEEPEGDINIE 109
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTK KE+P GDINI+
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKPKEKPVGDINIK 108

[Close]

BLAST of IVF0022412 vs. ExPASy TrEMBL
Match: A0A6J1D9Q8 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Momordica charantia OX=3673 GN=LOC111018936 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.1e-47
Identity = 96/108 (88.89%), Postives = 101/108 (93.52%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSF+DE+KSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFSDESKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEEPEGDINIE 109
           D AREVLKD+CQNLMVVCQHVRNTFDK+VLDF LTK    P GDINI+
Sbjct: 61  DSAREVLKDSCQNLMVVCQHVRNTFDKSVLDFKLTK----PVGDINIK 104

[Close]

BLAST of IVF0022412 vs. NCBI nr
Match: XP_008457416.1 (PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo] >XP_008457417.1 PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo] >TYJ97352.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo var. makuwa])

HSP 1 Score: 223 bits (569), Expect = 1.27e-73
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEEPEGDINIE 108
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEEPEGDINIE
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEEPEGDINIE 108

[Close]

BLAST of IVF0022412 vs. NCBI nr
Match: KAA0031779.1 (DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo var. makuwa])

HSP 1 Score: 221 bits (564), Expect = 7.38e-73
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEEPEGDINIE 108
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEEPEGDI+IE
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEEPEGDISIE 108

[Close]

BLAST of IVF0022412 vs. NCBI nr
Match: XP_004145267.1 (DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus] >KGN65775.1 hypothetical protein Csa_023153 [Cucumis sativus])

HSP 1 Score: 212 bits (540), Expect = 3.39e-69
Identity = 103/107 (96.26%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDETKSTFSMADEDHTLANALR TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEEPEGDINI 107
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTK KE+P GDINI
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKPKEKPVGDINI 107

[Close]

BLAST of IVF0022412 vs. NCBI nr
Match: XP_038893936.1 (DNA-directed RNA polymerases I and III subunit RPAC2 [Benincasa hispida])

HSP 1 Score: 202 bits (513), Expect = 3.92e-65
Identity = 100/107 (93.46%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEEPEGDINI 107
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLD  LTK    P GDINI
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLTK----PVGDINI 103

[Close]

BLAST of IVF0022412 vs. NCBI nr
Match: XP_023522054.1 (DNA-directed RNA polymerases I and III subunit RPAC2-like [Cucurbita pepo subsp. pepo] >XP_023524948.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 196 bits (497), Expect = 1.08e-62
Identity = 96/107 (89.72%), Postives = 98/107 (91.59%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDETKSTFSMADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEEPEGDINI 107
           DPAREVLKDACQNLM VCQHVRNT DKAVLD  LTK    P GDINI
Sbjct: 61  DPAREVLKDACQNLMAVCQHVRNTLDKAVLDHKLTK----PVGDINI 103

[Close]

BLAST of IVF0022412 vs. TAIR 10
Match: AT2G29540.1 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 137.1 bits (344), Expect = 8.3e-33
Identity = 66/103 (64.08%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFT+ + ++F++++EDHTLANA+R+ LNQDPRVT   Y+IPHPS  +VNIRVQTTG
Sbjct: 1   MEHGSFTNVSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDF-NLTKAKEEPE 103
           DPAREV KDACQ LM + +HVR+ FDKAV ++ +  K KEE E
Sbjct: 61  DPAREVFKDACQELMQMNRHVRSVFDKAVAEYKDEQKRKEEAE 103

[Close]

BLAST of IVF0022412 vs. TAIR 10
Match: AT2G29540.2 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 137.1 bits (344), Expect = 8.3e-33
Identity = 66/103 (64.08%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFT+ + ++F++++EDHTLANA+R+ LNQDPRVT   Y+IPHPS  +VNIRVQTTG
Sbjct: 1   MEHGSFTNVSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDF-NLTKAKEEPE 103
           DPAREV KDACQ LM + +HVR+ FDKAV ++ +  K KEE E
Sbjct: 61  DPAREVFKDACQELMQMNRHVRSVFDKAVAEYKDEQKRKEEAE 103

[Close]

BLAST of IVF0022412 vs. TAIR 10
Match: AT2G29540.3 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 90.5 bits (223), Expect = 8.9e-19
Identity = 45/69 (65.22%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 35  PRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDF-N 94
           PRVT   Y+IPHPS  +VNIRVQTTGDPAREV KDACQ LM + +HVR+ FDKAV ++ +
Sbjct: 52  PRVTVAAYTIPHPSLEQVNIRVQTTGDPAREVFKDACQELMQMNRHVRSVFDKAVAEYKD 111

Query: 95  LTKAKEEPE 103
             K KEE E
Sbjct: 112 EQKRKEEAE 120

[Close]

BLAST of IVF0022412 vs. TAIR 10
Match: AT3G52090.1 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 55.5 bits (132), Expect = 3.2e-08
Identity = 28/94 (29.79%), Postives = 51/94 (54.26%), Query Frame = 0


Query: 5   SFTDETK----STFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 64
           S+  +TK    ++F++  EDHT+ N +R  L++D  V F GY +PHP   ++ +R+ TT 
Sbjct: 20  SYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTTS 79

Query: 65  DPA-REVLKDACQNLMVVCQHVRNTFDKAVLDFN 94
             +  +    A  +L     +++N F+  V  F+
Sbjct: 80  QSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFS 113

[Close]

BLAST of IVF0022412 vs. TAIR 10
Match: AT3G52090.2 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-05
Identity = 28/77 (36.36%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 5  SFTDETK----STFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 64
          S+  +TK    ++F++  EDHT+ N +R  L++D  V F GY +PHP   ++ +R     
Sbjct: 20 SYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVR----- 79

Query: 65 DPAREVLKDACQNLMVV 78
          DP     KD  +NL VV
Sbjct: 80 DP-----KDWFRNLKVV 86

The following BLAST results are available for this feature:

BLAST of IVF0022412 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5XK67	3.6e-17	45.56	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Xenopus laevis OX=8355 G...	[more]
P97304	4.8e-17	42.72	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Mus musculus OX=10090 GN...	[more]
P0DPB6	6.2e-17	42.86	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo sapiens OX=9606 GN=...	[more]
Q1RMG8	2.4e-16	41.84	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Bos taurus OX=9913 GN=PO...	[more]
Q6DRI4	3.1e-16	46.81	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Danio rerio OX=7955 GN=p...	[more]

BLAST of IVF0022412 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C5G1	9.2e-56	100.00	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucumis melo OX=3656 GN=...	[more]
A0A5D3BBZ7	9.2e-56	100.00	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucumis melo var. makuwa...	[more]
A0A5A7SR68	3.5e-55	99.07	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucumis melo var. makuwa...	[more]
A0A0A0LV21	2.1e-52	95.37	RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G527910...	[more]
A0A6J1D9Q8	2.1e-47	88.89	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Momordica charantia OX=3...	[more]

BLAST of IVF0022412 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457416.1	1.27e-73	100.00	PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo] >...	[more]
KAA0031779.1	7.38e-73	99.07	DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo var. makuwa]	[more]
XP_004145267.1	3.39e-69	96.26	DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus] >KGN65775...	[more]
XP_038893936.1	3.92e-65	93.46	DNA-directed RNA polymerases I and III subunit RPAC2 [Benincasa hispida]	[more]
XP_023522054.1	1.08e-62	89.72	DNA-directed RNA polymerases I and III subunit RPAC2-like [Cucurbita pepo subsp....	[more]

BLAST of IVF0022412 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G29540.1	8.3e-33	64.08	RNApolymerase 14 kDa subunit	[more]
AT2G29540.2	8.3e-33	64.08	RNApolymerase 14 kDa subunit	[more]
AT2G29540.3	8.9e-19	65.22	RNApolymerase 14 kDa subunit	[more]
AT3G52090.1	3.2e-08	29.79	DNA-directed RNA polymerase, RBP11-like	[more]
AT3G52090.2	1.1e-05	36.36	DNA-directed RNA polymerase, RBP11-like	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	PFAM	PF13656	RNA_pol_L_2	coord: 12..83 e-value: 1.6E-29 score: 101.5
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 5..104 e-value: 1.3E-34 score: 120.1
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 8..92
None	No IPR available	PANTHER	PTHR13946:SF37	SUBFAMILY NOT NAMED	coord: 1..97
None	No IPR available	PANTHER	PTHR13946	DNA-DIRECTED RNA POLYMERASE I,II,III	coord: 1..97
IPR008193	DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site	PROSITE	PS01154	RNA_POL_L_13KD	coord: 16..47
IPR033898	DNA-directed RNA polymerases I and III subunit AC19	CDD	cd07029	RNAP_I_III_AC19	coord: 2..85 e-value: 1.76524E-43 score: 134.667

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0022412.2	IVF0022412.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046983	protein dimerization activity