IVF0022396 (gene) Melon (IVF77) v1

Overview


Name	IVF0022396
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Cyclic nucleotide-gated ion channel 1-like isoform X3
Location	chr04: 14620928 .. 14621574 (+)
RNA-Seq Expression	IVF0022396
Synteny	IVF0022396

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAAAGAAAGATGTTGAAATAGATTTATGGACAAATTATTATAGCTTCCAGAAGAAGAAGGAAATCAAGGAGTTTGTGAGAGACAAGTTTGAGTGGACAAATGATGTTAATTTGAAAACACTGCTCAACATGTTTTCGTCTCCATTCGTTGAGGAGATAAAGAAAGAACCTTGTAGGAATATCCTAAAGAGGGTGAGTTTTACTTGGTACATTTGTGAAGTAAATTGTTAGAATAGAAACAAATGACCTTGATCAATGTTTCATTGGCAGGTTCCAATGCTTAAAGTATTTGAAGAGGAGAAGTTAGAAGAGATGATGAAGGATATGAAGCCAATGGTTTTTAGAGAGCAGAGCTATATTATTCAAGAGGGGGAGCCTGTTGAGCAAATGCTATTGTTCACAAAAGGTATGATATTGGCATTTAGCAAGAGCACTAAAACTAGAATAATGATTAACGCTTTTGGAAAAGGTGATTTGTTTGGGGAGCAACTACTGAATTGGGCAACGGAAAATCTTCCTGTATCTGAAATTCCTTTGTCCAAATGTACTCTTAAGACACAGACCCAAATAGAAGCCTTCGTCTTAAGCCTATTGATCCACAATATCATACCAAGTGGGACACAAATATGTATAGGTTAAGTTAA

mRNA sequence

ATGCAAAAGAAAGATGTTGAAATAGATTTATGGACAAATTATTATAGCTTCCAGAAGAAGAAGGAAATCAAGGAGTTTGTGAGAGACAAGTTTGAGTGGACAAATGATGTTAATTTGAAAACACTGCTCAACATGTTTTCGTCTCCATTCGTTGAGGAGATAAAGAAAGAACCTTGTAGGAATATCCTAAAGAGGGTTCCAATGCTTAAAGTATTTGAAGAGGAGAAGTTAGAAGAGATGATGAAGGATATGAAGCCAATGGTTTTTAGAGAGCAGAGCTATATTATTCAAGAGGGGGAGCCTGTTGAGCAAATGCTATTGTTCACAAAAGGTATGATATTGGCATTTAGCAAGAGCACTAAAACTAGAATAATGATTAACGCTTTTGGAAAAGGTGATTTGTTTGGGGAGCAACTACTGAATTGGGCAACGGAAAATCTTCCTGTATCTGAAATTCCTTTCCTTCGTCTTAAGCCTATTGATCCACAATATCATACCAAGTGGGACACAAATATGTATAGGTTAAGTTAA

Coding sequence (CDS)

ATGCAAAAGAAAGATGTTGAAATAGATTTATGGACAAATTATTATAGCTTCCAGAAGAAGAAGGAAATCAAGGAGTTTGTGAGAGACAAGTTTGAGTGGACAAATGATGTTAATTTGAAAACACTGCTCAACATGTTTTCGTCTCCATTCGTTGAGGAGATAAAGAAAGAACCTTGTAGGAATATCCTAAAGAGGGTTCCAATGCTTAAAGTATTTGAAGAGGAGAAGTTAGAAGAGATGATGAAGGATATGAAGCCAATGGTTTTTAGAGAGCAGAGCTATATTATTCAAGAGGGGGAGCCTGTTGAGCAAATGCTATTGTTCACAAAAGGTATGATATTGGCATTTAGCAAGAGCACTAAAACTAGAATAATGATTAACGCTTTTGGAAAAGGTGATTTGTTTGGGGAGCAACTACTGAATTGGGCAACGGAAAATCTTCCTGTATCTGAAATTCCTTTCCTTCGTCTTAAGCCTATTGATCCACAATATCATACCAAGTGGGACACAAATATGTATAGGTTAAGTTAA

Protein sequence

MQKKDVEIDLWTNYYSFQKKKEIKEFVRDKFEWTNDVNLKTLLNMFSSPFVEEIKKEPCRNILKRVPMLKVFEEEKLEEMMKDMKPMVFREQSYIIQEGEPVEQMLLFTKGMILAFSKSTKTRIMINAFGKGDLFGEQLLNWATENLPVSEIPFLRLKPIDPQYHTKWDTNMYRLS

Homology

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BLAST of IVF0022396 vs. ExPASy Swiss-Prot
Match: O65717 (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana OX=3702 GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.5e-15
Identity = 47/159 (29.56%), Postives = 90/159 (56.60%), Query Frame = 0


Query: 1   MQKKDVEIDLWTNYYSFQK--KKEIKEFVRDKFEWTNDVNLKTLLNMFSSPFVEEIKKEP 60
           M+ K  + + W ++    +  +K I+ + + K++ T  V+ + LL+        +IK+  
Sbjct: 417 MRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHL 476

Query: 61  CRNILKRVPMLKVFEEEKLEEMMKDMKPMVFREQSYIIQEGEPVEQMLLFTKGMILAFSK 120
           C  +L RVPM +  +E+ L+ +   ++P+++ E+SYI++EG+PV++ML   +G +L  + 
Sbjct: 477 CLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT 536

Query: 121 STKTRIMINA--FGKGDLFGEQLLNWA-----TENLPVS 151
           +      +N+   G GD  GE+LL WA     + NLP+S
Sbjct: 537 NGGRTGFLNSEYLGAGDFCGEELLTWALDPHSSSNLPIS 575

[Close]

BLAST of IVF0022396 vs. ExPASy Swiss-Prot
Match: Q9LD40 (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana OX=3702 GN=CNGC13 PE=3 SV=2)

HSP 1 Score: 75.5 bits (184), Expect = 6.8e-13
Identity = 44/155 (28.39%), Postives = 81/155 (52.26%), Query Frame = 0


Query: 1   MQKKDVEIDLWTNYYSFQKKKEIKEFVRDKFEWTNDVNLKTLLNMFSSPFVEEIKKEPCR 60
           ++K+D E  +         +K I+ + + K++ T  V  + LL         +IK+  C 
Sbjct: 407 VRKRDAEQWMSHRMLPDDLRKRIRRYEQYKWQETRGVEEENLLRNLPKDLRRDIKRHFCL 466

Query: 61  NILKRVPMLKVFEEEKLEEMMKDMKPMVFREQSYIIQEGEPVEQMLLFTKGMILAFSKST 120
           ++LK+VP+ ++ +E+ L+ +   +KP+++ E SY I+EG+PVE+ML   +G +++ + + 
Sbjct: 467 DLLKKVPLFEIMDEQLLDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKLMSATTNG 526

Query: 121 KTRIMINA--FGKGDLFGEQLLNWATENLPVSEIP 154
                 NA      D  GE LL WA +    S  P
Sbjct: 527 GRTGFFNAVYLKPSDFCGEDLLTWALDPQSSSHFP 561

[Close]

BLAST of IVF0022396 vs. ExPASy Swiss-Prot
Match: G7JND3 (Protein CNGC15b OS=Medicago truncatula OX=3880 GN=CNGC15B PE=1 SV=2)

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-12
Identity = 44/156 (28.21%), Postives = 84/156 (53.85%), Query Frame = 0


Query: 4   KDVEIDLWTNYYSFQKKKEIKEFVR--DKFEW--TNDVNLKTLLNMFSSPFVEEIKKEPC 63
           K  + + W ++   Q  +E+++ VR  D+++W  T  V+ ++LL         +IK+  C
Sbjct: 396 KRTDTEQWMHHR--QLPQELRQSVRKYDQYKWIATRGVDEESLLRGLPLDLRRDIKRHLC 455

Query: 64  RNILKRVPMLKVFEEEKLEEMMKDMKPMVFREQSYIIQEGEPVEQMLLFTKGMILAFSKS 123
             +++RVP+    +E  L+ + + +KP +  E +Y+++EG+PV +ML   +G + +++  
Sbjct: 456 LELVRRVPLFDAMDERMLDAICERLKPALCTENTYLVREGDPVNEMLFIIRGNLDSYTTD 515

Query: 124 TKTRIMINA--FGKGDLFGEQLLNWATENLPVSEIP 154
                  N+   G GD  GE+LL WA +  P   IP
Sbjct: 516 GGRTGFFNSCRIGPGDFCGEELLTWALDPRPTMVIP 549

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BLAST of IVF0022396 vs. ExPASy Swiss-Prot
Match: Q9LNJ0 (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana OX=3702 GN=CNGC10 PE=2 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 3.4e-12
Identity = 42/155 (27.10%), Postives = 82/155 (52.90%), Query Frame = 0


Query: 1   MQKKDVEIDLWTNYYSFQKKKEIKEFVRDKFEWTNDVNLKTLLNMFSSPFVEEIKKEPCR 60
           ++K+D E  +         +K I+ + + +++ T  V  +TLL         +IK+  C 
Sbjct: 406 VRKRDAEQWMSHRMLPEDLRKRIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHLCL 465

Query: 61  NILKRVPMLKVFEEEKLEEMMKDMKPMVFREQSYIIQEGEPVEQMLLFTKGMILAFSKST 120
           ++LK+VP+ ++ +E+ L+ +   ++P+++ E SY+I+EG+PV +ML   +G +++ + + 
Sbjct: 466 DLLKKVPLFEIMDEQLLDAVCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATTNG 525

Query: 121 KTRIMINAFG--KGDLFGEQLLNWATENLPVSEIP 154
                 NA      D  GE LL WA +    S  P
Sbjct: 526 GRSGFFNAVNLKASDFCGEDLLPWALDPQSSSHFP 560

[Close]

BLAST of IVF0022396 vs. ExPASy Swiss-Prot
Match: Q9S9N5 (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana OX=3702 GN=CNGC7 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.9e-11
Identity = 43/159 (27.04%), Postives = 84/159 (52.83%), Query Frame = 0


Query: 1   MQKKDVEIDLWTNYYSFQKKKEIKEFVR--DKFEW--TNDVNLKTLLNMFSSPFVEEIKK 60
           M+ K  + + W ++ S    + ++E VR  D+++W  T  V+ + ++         +IK+
Sbjct: 433 MRIKRRDSEQWMHHRSL--PQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKR 492

Query: 61  EPCRNILKRVPMLKVFEEEKLEEMMKDMKPMVFREQSYIIQEGEPVEQMLLFTKGMILAF 120
             C N+++RVP+    +E  L+ + + +KP +F E +YI++EG+PV +M+   +G + + 
Sbjct: 493 HLCLNLVRRVPLFANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGRLESV 552

Query: 121 SKSTKTRIMIN--AFGKGDLFGEQLLNWATENLPVSEIP 154
           +         N     +GD  GE+LL WA +    S +P
Sbjct: 553 TTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSNLP 589

[Close]

BLAST of IVF0022396 vs. ExPASy TrEMBL
Match: A0A5D3CDZ2 (Cyclic nucleotide-gated ion channel 1-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G001090 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.5e-79
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MQKKDVEIDLWTNYYSFQKKKEIKEFVRDKFEWTNDVNLKTLLNMFSSPFVEEIKKEPCR 60
           MQKKDVEIDLWTNYYSFQKKKEIKEFVRDKFEWTNDVNLKTLLNMFSSPFVEEIKKEPCR
Sbjct: 1   MQKKDVEIDLWTNYYSFQKKKEIKEFVRDKFEWTNDVNLKTLLNMFSSPFVEEIKKEPCR 60

Query: 61  NILKRVPMLKVFEEEKLEEMMKDMKPMVFREQSYIIQEGEPVEQMLLFTKGMILAFSKST 120
           NILKRVPMLKVFEEEKLEEMMKDMKPMVFREQSYIIQEGEPVEQMLLFTKGMILAFSKST
Sbjct: 61  NILKRVPMLKVFEEEKLEEMMKDMKPMVFREQSYIIQEGEPVEQMLLFTKGMILAFSKST 120

Query: 121 KTRIMINAFGKGDLFGEQLLNWATENLPVSEIP 154
           KTRIMINAFGKGDLFGEQLLNWATENLPVSEIP
Sbjct: 121 KTRIMINAFGKGDLFGEQLLNWATENLPVSEIP 153

[Close]

BLAST of IVF0022396 vs. ExPASy TrEMBL
Match: A0A1S4DYA3 (cyclic nucleotide-gated ion channel 1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103491398 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.4e-74
Identity = 150/189 (79.37%), Postives = 158/189 (83.60%), Query Frame = 0


Query: 1   MQKKDVEIDLWTNYYSFQKKKEIKEFVRDKFEWTNDVNLKTLLNMFSSPFVEEIKKEPCR 60
           MQKKDVEIDLW +YY+FQKKKEIKEFVRDKFEW NDVNLKTLL++FSSPFVEEIKKE C 
Sbjct: 243 MQKKDVEIDLWIDYYNFQKKKEIKEFVRDKFEWKNDVNLKTLLDVFSSPFVEEIKKELCW 302

Query: 61  NILKRVPMLKVFEEEKLEEMMKDMKPMVFREQSYIIQEGEPVEQMLLFTKGMILAFSKST 120
           +ILKRV MLK FEEEKL+EMMKDMKPMVF EQSYII+EGEPVEQMLLFTKGM L FSKST
Sbjct: 303 DILKRVLMLKEFEEEKLKEMMKDMKPMVFGEQSYIIREGEPVEQMLLFTKGMGLTFSKST 362

Query: 121 KTRIMINAFGKGDLFGEQLLNWATENLPVSEIPFLR-------------LKPIDPQYHTK 177
            TR  INAFGKGDLFGEQLL WA ENLPVSEIP  +             LK IDPQYHTK
Sbjct: 363 GTRTTINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALKAIDPQYHTK 422

[Close]

BLAST of IVF0022396 vs. ExPASy TrEMBL
Match: A0A5A7V0L3 (Cyclic nucleotide-gated ion channel 1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G00660 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.4e-74
Identity = 150/189 (79.37%), Postives = 158/189 (83.60%), Query Frame = 0


Query: 1   MQKKDVEIDLWTNYYSFQKKKEIKEFVRDKFEWTNDVNLKTLLNMFSSPFVEEIKKEPCR 60
           MQKKDVEIDLW +YY+FQKKKEIKEFVRDKFEW NDVNLKTLL++FSSPFVEEIKKE C 
Sbjct: 351 MQKKDVEIDLWIDYYNFQKKKEIKEFVRDKFEWKNDVNLKTLLDVFSSPFVEEIKKELCW 410

Query: 61  NILKRVPMLKVFEEEKLEEMMKDMKPMVFREQSYIIQEGEPVEQMLLFTKGMILAFSKST 120
           +ILKRV MLK FEEEKL+EMMKDMKPMVF EQSYII+EGEPVEQMLLFTKGM L FSKST
Sbjct: 411 DILKRVLMLKEFEEEKLKEMMKDMKPMVFGEQSYIIREGEPVEQMLLFTKGMGLTFSKST 470

Query: 121 KTRIMINAFGKGDLFGEQLLNWATENLPVSEIPFLR-------------LKPIDPQYHTK 177
            TR  INAFGKGDLFGEQLL WA ENLPVSEIP  +             LK IDPQYHTK
Sbjct: 471 GTRTTINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALKAIDPQYHTK 530

[Close]

BLAST of IVF0022396 vs. ExPASy TrEMBL
Match: A0A5D3DCD7 (Cyclic nucleotide-gated ion channel 1-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75860G00390 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.4e-74
Identity = 150/189 (79.37%), Postives = 158/189 (83.60%), Query Frame = 0


Query: 1   MQKKDVEIDLWTNYYSFQKKKEIKEFVRDKFEWTNDVNLKTLLNMFSSPFVEEIKKEPCR 60
           MQKKDVEIDLW +YY+FQKKKEIKEFVRDKFEW NDVNLKTLL++FSSPFVEEIKKE C 
Sbjct: 346 MQKKDVEIDLWIDYYNFQKKKEIKEFVRDKFEWKNDVNLKTLLDVFSSPFVEEIKKELCW 405

Query: 61  NILKRVPMLKVFEEEKLEEMMKDMKPMVFREQSYIIQEGEPVEQMLLFTKGMILAFSKST 120
           +ILKRV MLK FEEEKL+EMMKDMKPMVF EQSYII+EGEPVEQMLLFTKGM L FSKST
Sbjct: 406 DILKRVLMLKEFEEEKLKEMMKDMKPMVFGEQSYIIREGEPVEQMLLFTKGMGLTFSKST 465

Query: 121 KTRIMINAFGKGDLFGEQLLNWATENLPVSEIPFLR-------------LKPIDPQYHTK 177
            TR  INAFGKGDLFGEQLL WA ENLPVSEIP  +             LK IDPQYHTK
Sbjct: 466 GTRTTINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALKAIDPQYHTK 525

[Close]

BLAST of IVF0022396 vs. ExPASy TrEMBL
Match: A0A1S3BLM4 (cyclic nucleotide-gated ion channel 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491398 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.4e-74
Identity = 150/189 (79.37%), Postives = 158/189 (83.60%), Query Frame = 0


Query: 1   MQKKDVEIDLWTNYYSFQKKKEIKEFVRDKFEWTNDVNLKTLLNMFSSPFVEEIKKEPCR 60
           MQKKDVEIDLW +YY+FQKKKEIKEFVRDKFEW NDVNLKTLL++FSSPFVEEIKKE C 
Sbjct: 350 MQKKDVEIDLWIDYYNFQKKKEIKEFVRDKFEWKNDVNLKTLLDVFSSPFVEEIKKELCW 409

Query: 61  NILKRVPMLKVFEEEKLEEMMKDMKPMVFREQSYIIQEGEPVEQMLLFTKGMILAFSKST 120
           +ILKRV MLK FEEEKL+EMMKDMKPMVF EQSYII+EGEPVEQMLLFTKGM L FSKST
Sbjct: 410 DILKRVLMLKEFEEEKLKEMMKDMKPMVFGEQSYIIREGEPVEQMLLFTKGMGLTFSKST 469

Query: 121 KTRIMINAFGKGDLFGEQLLNWATENLPVSEIPFLR-------------LKPIDPQYHTK 177
            TR  INAFGKGDLFGEQLL WA ENLPVSEIP  +             LK IDPQYHTK
Sbjct: 470 GTRTTINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALKAIDPQYHTK 529

[Close]

BLAST of IVF0022396 vs. NCBI nr
Match: KAA0050780.1 (cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo var. makuwa] >TYK08566.1 cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 304 bits (778), Expect = 3.99e-103
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MQKKDVEIDLWTNYYSFQKKKEIKEFVRDKFEWTNDVNLKTLLNMFSSPFVEEIKKEPCR 60
           MQKKDVEIDLWTNYYSFQKKKEIKEFVRDKFEWTNDVNLKTLLNMFSSPFVEEIKKEPCR
Sbjct: 1   MQKKDVEIDLWTNYYSFQKKKEIKEFVRDKFEWTNDVNLKTLLNMFSSPFVEEIKKEPCR 60

Query: 61  NILKRVPMLKVFEEEKLEEMMKDMKPMVFREQSYIIQEGEPVEQMLLFTKGMILAFSKST 120
           NILKRVPMLKVFEEEKLEEMMKDMKPMVFREQSYIIQEGEPVEQMLLFTKGMILAFSKST
Sbjct: 61  NILKRVPMLKVFEEEKLEEMMKDMKPMVFREQSYIIQEGEPVEQMLLFTKGMILAFSKST 120

Query: 121 KTRIMINAFGKGDLFGEQLLNWATENLPVSEIP 153
           KTRIMINAFGKGDLFGEQLLNWATENLPVSEIP
Sbjct: 121 KTRIMINAFGKGDLFGEQLLNWATENLPVSEIP 153

[Close]

BLAST of IVF0022396 vs. NCBI nr
Match: XP_016900694.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo] >XP_016900695.1 PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo])

HSP 1 Score: 286 bits (733), Expect = 7.71e-93
Identity = 150/189 (79.37%), Postives = 158/189 (83.60%), Query Frame = 0


Query: 1   MQKKDVEIDLWTNYYSFQKKKEIKEFVRDKFEWTNDVNLKTLLNMFSSPFVEEIKKEPCR 60
           MQKKDVEIDLW +YY+FQKKKEIKEFVRDKFEW NDVNLKTLL++FSSPFVEEIKKE C 
Sbjct: 243 MQKKDVEIDLWIDYYNFQKKKEIKEFVRDKFEWKNDVNLKTLLDVFSSPFVEEIKKELCW 302

Query: 61  NILKRVPMLKVFEEEKLEEMMKDMKPMVFREQSYIIQEGEPVEQMLLFTKGMILAFSKST 120
           +ILKRV MLK FEEEKL+EMMKDMKPMVF EQSYII+EGEPVEQMLLFTKGM L FSKST
Sbjct: 303 DILKRVLMLKEFEEEKLKEMMKDMKPMVFGEQSYIIREGEPVEQMLLFTKGMGLTFSKST 362

Query: 121 KTRIMINAFGKGDLFGEQLLNWATENLPVSEIPFLR-------------LKPIDPQYHTK 176
            TR  INAFGKGDLFGEQLL WA ENLPVSEIP  +             LK IDPQYHTK
Sbjct: 363 GTRTTINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALKAIDPQYHTK 422

[Close]

BLAST of IVF0022396 vs. NCBI nr
Match: XP_016900693.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis melo] >TYK21168.1 cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 286 bits (733), Expect = 1.40e-91
Identity = 150/189 (79.37%), Postives = 158/189 (83.60%), Query Frame = 0


Query: 1   MQKKDVEIDLWTNYYSFQKKKEIKEFVRDKFEWTNDVNLKTLLNMFSSPFVEEIKKEPCR 60
           MQKKDVEIDLW +YY+FQKKKEIKEFVRDKFEW NDVNLKTLL++FSSPFVEEIKKE C 
Sbjct: 346 MQKKDVEIDLWIDYYNFQKKKEIKEFVRDKFEWKNDVNLKTLLDVFSSPFVEEIKKELCW 405

Query: 61  NILKRVPMLKVFEEEKLEEMMKDMKPMVFREQSYIIQEGEPVEQMLLFTKGMILAFSKST 120
           +ILKRV MLK FEEEKL+EMMKDMKPMVF EQSYII+EGEPVEQMLLFTKGM L FSKST
Sbjct: 406 DILKRVLMLKEFEEEKLKEMMKDMKPMVFGEQSYIIREGEPVEQMLLFTKGMGLTFSKST 465

Query: 121 KTRIMINAFGKGDLFGEQLLNWATENLPVSEIPFLR-------------LKPIDPQYHTK 176
            TR  INAFGKGDLFGEQLL WA ENLPVSEIP  +             LK IDPQYHTK
Sbjct: 466 GTRTTINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALKAIDPQYHTK 525

[Close]

BLAST of IVF0022396 vs. NCBI nr
Match: XP_008449547.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 286 bits (733), Expect = 1.56e-91
Identity = 150/189 (79.37%), Postives = 158/189 (83.60%), Query Frame = 0


Query: 1   MQKKDVEIDLWTNYYSFQKKKEIKEFVRDKFEWTNDVNLKTLLNMFSSPFVEEIKKEPCR 60
           MQKKDVEIDLW +YY+FQKKKEIKEFVRDKFEW NDVNLKTLL++FSSPFVEEIKKE C 
Sbjct: 350 MQKKDVEIDLWIDYYNFQKKKEIKEFVRDKFEWKNDVNLKTLLDVFSSPFVEEIKKELCW 409

Query: 61  NILKRVPMLKVFEEEKLEEMMKDMKPMVFREQSYIIQEGEPVEQMLLFTKGMILAFSKST 120
           +ILKRV MLK FEEEKL+EMMKDMKPMVF EQSYII+EGEPVEQMLLFTKGM L FSKST
Sbjct: 410 DILKRVLMLKEFEEEKLKEMMKDMKPMVFGEQSYIIREGEPVEQMLLFTKGMGLTFSKST 469

Query: 121 KTRIMINAFGKGDLFGEQLLNWATENLPVSEIPFLR-------------LKPIDPQYHTK 176
            TR  INAFGKGDLFGEQLL WA ENLPVSEIP  +             LK IDPQYHTK
Sbjct: 470 GTRTTINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALKAIDPQYHTK 529

[Close]

BLAST of IVF0022396 vs. NCBI nr
Match: KAA0061693.1 (cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 286 bits (733), Expect = 1.60e-91
Identity = 150/189 (79.37%), Postives = 158/189 (83.60%), Query Frame = 0


Query: 1   MQKKDVEIDLWTNYYSFQKKKEIKEFVRDKFEWTNDVNLKTLLNMFSSPFVEEIKKEPCR 60
           MQKKDVEIDLW +YY+FQKKKEIKEFVRDKFEW NDVNLKTLL++FSSPFVEEIKKE C 
Sbjct: 351 MQKKDVEIDLWIDYYNFQKKKEIKEFVRDKFEWKNDVNLKTLLDVFSSPFVEEIKKELCW 410

Query: 61  NILKRVPMLKVFEEEKLEEMMKDMKPMVFREQSYIIQEGEPVEQMLLFTKGMILAFSKST 120
           +ILKRV MLK FEEEKL+EMMKDMKPMVF EQSYII+EGEPVEQMLLFTKGM L FSKST
Sbjct: 411 DILKRVLMLKEFEEEKLKEMMKDMKPMVFGEQSYIIREGEPVEQMLLFTKGMGLTFSKST 470

Query: 121 KTRIMINAFGKGDLFGEQLLNWATENLPVSEIPFLR-------------LKPIDPQYHTK 176
            TR  INAFGKGDLFGEQLL WA ENLPVSEIP  +             LK IDPQYHTK
Sbjct: 471 GTRTTINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALKAIDPQYHTK 530

[Close]

BLAST of IVF0022396 vs. TAIR 10
Match: AT5G53130.1 (cyclic nucleotide gated channel 1 )

HSP 1 Score: 81.6 bits (200), Expect = 6.7e-16
Identity = 47/159 (29.56%), Postives = 90/159 (56.60%), Query Frame = 0


Query: 1   MQKKDVEIDLWTNYYSFQK--KKEIKEFVRDKFEWTNDVNLKTLLNMFSSPFVEEIKKEP 60
           M+ K  + + W ++    +  +K I+ + + K++ T  V+ + LL+        +IK+  
Sbjct: 417 MRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHL 476

Query: 61  CRNILKRVPMLKVFEEEKLEEMMKDMKPMVFREQSYIIQEGEPVEQMLLFTKGMILAFSK 120
           C  +L RVPM +  +E+ L+ +   ++P+++ E+SYI++EG+PV++ML   +G +L  + 
Sbjct: 477 CLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT 536

Query: 121 STKTRIMINA--FGKGDLFGEQLLNWA-----TENLPVS 151
           +      +N+   G GD  GE+LL WA     + NLP+S
Sbjct: 537 NGGRTGFLNSEYLGAGDFCGEELLTWALDPHSSSNLPIS 575

[Close]

BLAST of IVF0022396 vs. TAIR 10
Match: AT4G01010.1 (cyclic nucleotide-gated channel 13 )

HSP 1 Score: 75.5 bits (184), Expect = 4.8e-14
Identity = 44/155 (28.39%), Postives = 81/155 (52.26%), Query Frame = 0


Query: 1   MQKKDVEIDLWTNYYSFQKKKEIKEFVRDKFEWTNDVNLKTLLNMFSSPFVEEIKKEPCR 60
           ++K+D E  +         +K I+ + + K++ T  V  + LL         +IK+  C 
Sbjct: 407 VRKRDAEQWMSHRMLPDDLRKRIRRYEQYKWQETRGVEEENLLRNLPKDLRRDIKRHFCL 466

Query: 61  NILKRVPMLKVFEEEKLEEMMKDMKPMVFREQSYIIQEGEPVEQMLLFTKGMILAFSKST 120
           ++LK+VP+ ++ +E+ L+ +   +KP+++ E SY I+EG+PVE+ML   +G +++ + + 
Sbjct: 467 DLLKKVPLFEIMDEQLLDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKLMSATTNG 526

Query: 121 KTRIMINA--FGKGDLFGEQLLNWATENLPVSEIP 154
                 NA      D  GE LL WA +    S  P
Sbjct: 527 GRTGFFNAVYLKPSDFCGEDLLTWALDPQSSSHFP 561

[Close]

BLAST of IVF0022396 vs. TAIR 10
Match: AT1G01340.1 (cyclic nucleotide gated channel 10 )

HSP 1 Score: 73.2 bits (178), Expect = 2.4e-13
Identity = 42/155 (27.10%), Postives = 82/155 (52.90%), Query Frame = 0


Query: 1   MQKKDVEIDLWTNYYSFQKKKEIKEFVRDKFEWTNDVNLKTLLNMFSSPFVEEIKKEPCR 60
           ++K+D E  +         +K I+ + + +++ T  V  +TLL         +IK+  C 
Sbjct: 401 VRKRDAEQWMSHRMLPEDLRKRIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHLCL 460

Query: 61  NILKRVPMLKVFEEEKLEEMMKDMKPMVFREQSYIIQEGEPVEQMLLFTKGMILAFSKST 120
           ++LK+VP+ ++ +E+ L+ +   ++P+++ E SY+I+EG+PV +ML   +G +++ + + 
Sbjct: 461 DLLKKVPLFEIMDEQLLDAVCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATTNG 520

Query: 121 KTRIMINAFG--KGDLFGEQLLNWATENLPVSEIP 154
                 NA      D  GE LL WA +    S  P
Sbjct: 521 GRSGFFNAVNLKASDFCGEDLLPWALDPQSSSHFP 555

[Close]

BLAST of IVF0022396 vs. TAIR 10
Match: AT1G01340.2 (cyclic nucleotide gated channel 10 )

HSP 1 Score: 73.2 bits (178), Expect = 2.4e-13
Identity = 42/155 (27.10%), Postives = 82/155 (52.90%), Query Frame = 0


Query: 1   MQKKDVEIDLWTNYYSFQKKKEIKEFVRDKFEWTNDVNLKTLLNMFSSPFVEEIKKEPCR 60
           ++K+D E  +         +K I+ + + +++ T  V  +TLL         +IK+  C 
Sbjct: 406 VRKRDAEQWMSHRMLPEDLRKRIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHLCL 465

Query: 61  NILKRVPMLKVFEEEKLEEMMKDMKPMVFREQSYIIQEGEPVEQMLLFTKGMILAFSKST 120
           ++LK+VP+ ++ +E+ L+ +   ++P+++ E SY+I+EG+PV +ML   +G +++ + + 
Sbjct: 466 DLLKKVPLFEIMDEQLLDAVCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATTNG 525

Query: 121 KTRIMINAFG--KGDLFGEQLLNWATENLPVSEIP 154
                 NA      D  GE LL WA +    S  P
Sbjct: 526 GRSGFFNAVNLKASDFCGEDLLPWALDPQSSSHFP 560

[Close]

BLAST of IVF0022396 vs. TAIR 10
Match: AT1G15990.1 (cyclic nucleotide gated channel 7 )

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-12
Identity = 43/159 (27.04%), Postives = 84/159 (52.83%), Query Frame = 0


Query: 1   MQKKDVEIDLWTNYYSFQKKKEIKEFVR--DKFEW--TNDVNLKTLLNMFSSPFVEEIKK 60
           M+ K  + + W ++ S    + ++E VR  D+++W  T  V+ + ++         +IK+
Sbjct: 404 MRIKRRDSEQWMHHRSL--PQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKR 463

Query: 61  EPCRNILKRVPMLKVFEEEKLEEMMKDMKPMVFREQSYIIQEGEPVEQMLLFTKGMILAF 120
             C N+++RVP+    +E  L+ + + +KP +F E +YI++EG+PV +M+   +G + + 
Sbjct: 464 HLCLNLVRRVPLFANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGRLESV 523

Query: 121 SKSTKTRIMIN--AFGKGDLFGEQLLNWATENLPVSEIP 154
           +         N     +GD  GE+LL WA +    S +P
Sbjct: 524 TTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSNLP 560

The following BLAST results are available for this feature:

BLAST of IVF0022396 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65717	9.5e-15	29.56	Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana OX=3702 GN=CNGC1 P...	[more]
Q9LD40	6.8e-13	28.39	Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana OX=3702 ...	[more]
G7JND3	1.5e-12	28.21	Protein CNGC15b OS=Medicago truncatula OX=3880 GN=CNGC15B PE=1 SV=2	[more]
Q9LNJ0	3.4e-12	27.10	Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9S9N5	2.9e-11	27.04	Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of IVF0022396 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CDZ2	1.5e-79	100.00	Cyclic nucleotide-gated ion channel 1-like isoform X3 OS=Cucumis melo var. makuw...	[more]
A0A1S4DYA3	1.4e-74	79.37	cyclic nucleotide-gated ion channel 1-like isoform X3 OS=Cucumis melo OX=3656 GN...	[more]
A0A5A7V0L3	1.4e-74	79.37	Cyclic nucleotide-gated ion channel 1-like isoform X1 OS=Cucumis melo var. makuw...	[more]
A0A5D3DCD7	1.4e-74	79.37	Cyclic nucleotide-gated ion channel 1-like isoform X2 OS=Cucumis melo var. makuw...	[more]
A0A1S3BLM4	1.4e-74	79.37	cyclic nucleotide-gated ion channel 1-like isoform X1 OS=Cucumis melo OX=3656 GN...	[more]

BLAST of IVF0022396 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050780.1	3.99e-103	100.00	cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo var. makuwa]...	[more]
XP_016900694.1	7.71e-93	79.37	PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo] ...	[more]
XP_016900693.1	1.40e-91	79.37	PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis melo] ...	[more]
XP_008449547.1	1.56e-91	79.37	PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo]	[more]
KAA0061693.1	1.60e-91	79.37	cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0022396 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53130.1	6.7e-16	29.56	cyclic nucleotide gated channel 1	[more]
AT4G01010.1	4.8e-14	28.39	cyclic nucleotide-gated channel 13	[more]
AT1G01340.1	2.4e-13	27.10	cyclic nucleotide gated channel 10	[more]
AT1G01340.2	2.4e-13	27.10	cyclic nucleotide gated channel 10	[more]
AT1G15990.1	2.0e-12	27.04	cyclic nucleotide gated channel 7	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014710	RmlC-like jelly roll fold	GENE3D	2.60.120.10	Jelly Rolls	coord: 66..166 e-value: 3.9E-18 score: 67.4
None	No IPR available	PANTHER	PTHR45651	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	coord: 5..150
None	No IPR available	PANTHER	PTHR45651:SF65	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 1-LIKE	coord: 5..150
IPR000595	Cyclic nucleotide-binding domain	PROSITE	PS50042	CNMP_BINDING_3	coord: 68..148 score: 14.2886
IPR018490	Cyclic nucleotide-binding-like	SUPERFAMILY	51206	cAMP-binding domain-like	coord: 15..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0022396.2	IVF0022396.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034220	ion transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005216	ion channel activity