IVF0022368 (gene) Melon (IVF77) v1

Overview


Name	IVF0022368
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	ATP-dependent helicase ATRX
Location	chr05: 15324944 .. 15325246 (+)
RNA-Seq Expression	IVF0022368
Synteny	IVF0022368

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATGGGAAGTGTACAGAAAATCATTAGAATGGGAGGAAGTGCAGAAAGTTTCACCAGGAGATTTTATATCTGAGCAAAAGTTAACCACTTCAAATAATGCCCATCCTGCACCGGAGACTATTGATCTGGCACAGTCAAGGGCCAGGAACCGATTTGTTTCCCGTAAATGCACAAATCTTTCTCATTTGCTGACACTCAGAAGTCAGGGGACAAAGGTTGGTTGTAGTACAGTATGCGGGGAATGTGCACAGGAGATAAGCTGGGAAGACCTTAACAGAGATGCCAAGTTAGGGAAGTGA

mRNA sequence

ATGGCATGGGAAGTGTACAGAAAATCATTAGAATGGGAGGAAGTGCAGAAAGTTTCACCAGGAGATTTTATATCTGAGCAAAAGTTAACCACTTCAAATAATGCCCATCCTGCACCGGAGACTATTGATCTGGCACAGTCAAGGGCCAGGAACCGATTTGTTTCCCGTAAATGCACAAATCTTTCTCATTTGCTGACACTCAGAAGTCAGGGGACAAAGGTTGGTTGTAGTACAGTATGCGGGGAATGTGCACAGGAGATAAGCTGGGAAGACCTTAACAGAGATGCCAAGTTAGGGAAGTGA

Coding sequence (CDS)

ATGGCATGGGAAGTGTACAGAAAATCATTAGAATGGGAGGAAGTGCAGAAAGTTTCACCAGGAGATTTTATATCTGAGCAAAAGTTAACCACTTCAAATAATGCCCATCCTGCACCGGAGACTATTGATCTGGCACAGTCAAGGGCCAGGAACCGATTTGTTTCCCGTAAATGCACAAATCTTTCTCATTTGCTGACACTCAGAAGTCAGGGGACAAAGGTTGGTTGTAGTACAGTATGCGGGGAATGTGCACAGGAGATAAGCTGGGAAGACCTTAACAGAGATGCCAAGTTAGGGAAGTGA

Protein sequence

MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK

Homology

[Close]

BLAST of IVF0022368 vs. ExPASy Swiss-Prot
Match: F4HW51 (Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana OX=3702 GN=ATRX PE=2 SV=2)

HSP 1 Score: 94.0 bits (232), Expect = 1.0e-18
Identity = 49/98 (50.00%), Postives = 63/98 (64.29%), Query Frame = 0


Query: 1    MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 60
            MAWEVYR++LEWEEVQ+V   +     K + S    P P+     +   R+RFV+R CT 
Sbjct: 1380 MAWEVYRRALEWEEVQRVPFSESPVVPKPSPSTQTEPLPQ----PKGFNRSRFVNRNCTR 1439

Query: 61   LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKL 99
            ++H LTL SQG KVG STVCGEC + I WED+   +KL
Sbjct: 1440 IAHQLTLISQGLKVGSSTVCGECGRVIRWEDVIPASKL 1473

[Close]

BLAST of IVF0022368 vs. ExPASy TrEMBL
Match: A0A1S3B502 (ATP-dependent helicase ATRX OS=Cucumis melo OX=3656 GN=LOC103485842 PE=3 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 3.1e-50
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1    MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 60
            MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN
Sbjct: 1293 MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 1352

Query: 61   LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK 101
            LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK
Sbjct: 1353 LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK 1392

[Close]

BLAST of IVF0022368 vs. ExPASy TrEMBL
Match: A0A1S3B4Z9 (ATP-dependent helicase ATRX OS=Cucumis melo OX=3656 GN=LOC103485842 PE=3 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 3.1e-50
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1    MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 60
            MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN
Sbjct: 1391 MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 1450

Query: 61   LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK 101
            LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK
Sbjct: 1451 LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK 1490

[Close]

BLAST of IVF0022368 vs. ExPASy TrEMBL
Match: A0A5D3BHT1 (Protein CHROMATIN REMODELING 20 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold429G00030 PE=3 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 3.1e-50
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 60
           MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN
Sbjct: 724 MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 783

Query: 61  LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK 101
           LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK
Sbjct: 784 LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK 823

[Close]

BLAST of IVF0022368 vs. ExPASy TrEMBL
Match: A0A1S3B498 (ATP-dependent helicase ATRX OS=Cucumis melo OX=3656 GN=LOC103485842 PE=3 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 3.1e-50
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1    MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 60
            MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN
Sbjct: 1284 MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 1343

Query: 61   LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK 101
            LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK
Sbjct: 1344 LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK 1383

[Close]

BLAST of IVF0022368 vs. ExPASy TrEMBL
Match: A0A1S3B484 (ATP-dependent helicase ATRX OS=Cucumis melo OX=3656 GN=LOC103485842 PE=3 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 3.1e-50
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1    MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 60
            MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN
Sbjct: 1385 MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 1444

Query: 61   LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK 101
            LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK
Sbjct: 1445 LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK 1484

[Close]

BLAST of IVF0022368 vs. NCBI nr
Match: TYJ98677.1 (protein CHROMATIN REMODELING 20 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 206 bits (525), Expect = 5.29e-60
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 60
           MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN
Sbjct: 724 MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 783

Query: 61  LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK 100
           LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK
Sbjct: 784 LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK 823

[Close]

BLAST of IVF0022368 vs. NCBI nr
Match: XP_008441788.1 (PREDICTED: protein CHROMATIN REMODELING 20 isoform X5 [Cucumis melo])

HSP 1 Score: 206 bits (525), Expect = 2.68e-59
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1    MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 60
            MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN
Sbjct: 1284 MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 1343

Query: 61   LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK 100
            LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK
Sbjct: 1344 LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK 1383

[Close]

BLAST of IVF0022368 vs. NCBI nr
Match: XP_011649020.1 (protein CHROMATIN REMODELING 20 isoform X5 [Cucumis sativus])

HSP 1 Score: 206 bits (525), Expect = 2.68e-59
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1    MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 60
            MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN
Sbjct: 1284 MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 1343

Query: 61   LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK 100
            LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK
Sbjct: 1344 LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK 1383

[Close]

BLAST of IVF0022368 vs. NCBI nr
Match: XP_008441786.1 (PREDICTED: protein CHROMATIN REMODELING 20 isoform X4 [Cucumis melo] >XP_008441787.1 PREDICTED: protein CHROMATIN REMODELING 20 isoform X4 [Cucumis melo])

HSP 1 Score: 206 bits (525), Expect = 2.68e-59
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1    MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 60
            MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN
Sbjct: 1293 MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 1352

Query: 61   LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK 100
            LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK
Sbjct: 1353 LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK 1392

[Close]

BLAST of IVF0022368 vs. NCBI nr
Match: XP_031736982.1 (protein CHROMATIN REMODELING 20 isoform X4 [Cucumis sativus])

HSP 1 Score: 206 bits (525), Expect = 2.68e-59
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1    MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 60
            MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN
Sbjct: 1293 MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 1352

Query: 61   LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK 100
            LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK
Sbjct: 1353 LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKLGK 1392

[Close]

BLAST of IVF0022368 vs. TAIR 10
Match: AT1G08600.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 94.0 bits (232), Expect = 7.4e-20
Identity = 49/98 (50.00%), Postives = 63/98 (64.29%), Query Frame = 0


Query: 1    MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 60
            MAWEVYR++LEWEEVQ+V   +     K + S    P P+     +   R+RFV+R CT 
Sbjct: 1359 MAWEVYRRALEWEEVQRVPFSESPVVPKPSPSTQTEPLPQ----PKGFNRSRFVNRNCTR 1418

Query: 61   LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKL 99
            ++H LTL SQG KVG STVCGEC + I WED+   +KL
Sbjct: 1419 IAHQLTLISQGLKVGSSTVCGECGRVIRWEDVIPASKL 1452

[Close]

BLAST of IVF0022368 vs. TAIR 10
Match: AT1G08600.3 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 94.0 bits (232), Expect = 7.4e-20
Identity = 49/98 (50.00%), Postives = 63/98 (64.29%), Query Frame = 0


Query: 1    MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 60
            MAWEVYR++LEWEEVQ+V   +     K + S    P P+     +   R+RFV+R CT 
Sbjct: 1380 MAWEVYRRALEWEEVQRVPFSESPVVPKPSPSTQTEPLPQ----PKGFNRSRFVNRNCTR 1439

Query: 61   LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKL 99
            ++H LTL SQG KVG STVCGEC + I WED+   +KL
Sbjct: 1440 IAHQLTLISQGLKVGSSTVCGECGRVIRWEDVIPASKL 1473

[Close]

BLAST of IVF0022368 vs. TAIR 10
Match: AT1G08600.4 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 94.0 bits (232), Expect = 7.4e-20
Identity = 49/98 (50.00%), Postives = 63/98 (64.29%), Query Frame = 0


Query: 1    MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 60
            MAWEVYR++LEWEEVQ+V   +     K + S    P P+     +   R+RFV+R CT 
Sbjct: 1380 MAWEVYRRALEWEEVQRVPFSESPVVPKPSPSTQTEPLPQ----PKGFNRSRFVNRNCTR 1439

Query: 61   LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKL 99
            ++H LTL SQG KVG STVCGEC + I WED+   +KL
Sbjct: 1440 IAHQLTLISQGLKVGSSTVCGECGRVIRWEDVIPASKL 1473

[Close]

BLAST of IVF0022368 vs. TAIR 10
Match: AT1G08600.2 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 94.0 bits (232), Expect = 7.4e-20
Identity = 49/98 (50.00%), Postives = 63/98 (64.29%), Query Frame = 0


Query: 1    MAWEVYRKSLEWEEVQKVSPGDFISEQKLTTSNNAHPAPETIDLAQSRARNRFVSRKCTN 60
            MAWEVYR++LEWEEVQ+V   +     K + S    P P+     +   R+RFV+R CT 
Sbjct: 1380 MAWEVYRRALEWEEVQRVPFSESPVVPKPSPSTQTEPLPQ----PKGFNRSRFVNRNCTR 1439

Query: 61   LSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDAKL 99
            ++H LTL SQG KVG STVCGEC + I WED+   +KL
Sbjct: 1440 IAHQLTLISQGLKVGSSTVCGECGRVIRWEDVIPASKL 1473

The following BLAST results are available for this feature:

BLAST of IVF0022368 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4HW51	1.0e-18	50.00	Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana OX=3702 GN=ATRX PE=2 SV=...	[more]

BLAST of IVF0022368 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B502	3.1e-50	100.00	ATP-dependent helicase ATRX OS=Cucumis melo OX=3656 GN=LOC103485842 PE=3 SV=1	[more]
A0A1S3B4Z9	3.1e-50	100.00	ATP-dependent helicase ATRX OS=Cucumis melo OX=3656 GN=LOC103485842 PE=3 SV=1	[more]
A0A5D3BHT1	3.1e-50	100.00	Protein CHROMATIN REMODELING 20 isoform X1 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3B498	3.1e-50	100.00	ATP-dependent helicase ATRX OS=Cucumis melo OX=3656 GN=LOC103485842 PE=3 SV=1	[more]
A0A1S3B484	3.1e-50	100.00	ATP-dependent helicase ATRX OS=Cucumis melo OX=3656 GN=LOC103485842 PE=3 SV=1	[more]

BLAST of IVF0022368 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98677.1	5.29e-60	100.00	protein CHROMATIN REMODELING 20 isoform X1 [Cucumis melo var. makuwa]	[more]
XP_008441788.1	2.68e-59	100.00	PREDICTED: protein CHROMATIN REMODELING 20 isoform X5 [Cucumis melo]	[more]
XP_011649020.1	2.68e-59	100.00	protein CHROMATIN REMODELING 20 isoform X5 [Cucumis sativus]	[more]
XP_008441786.1	2.68e-59	100.00	PREDICTED: protein CHROMATIN REMODELING 20 isoform X4 [Cucumis melo] >XP_0084417...	[more]
XP_031736982.1	2.68e-59	100.00	protein CHROMATIN REMODELING 20 isoform X4 [Cucumis sativus]	[more]

BLAST of IVF0022368 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08600.1	7.4e-20	50.00	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G08600.3	7.4e-20	50.00	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G08600.4	7.4e-20	50.00	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G08600.2	7.4e-20	50.00	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044574	ATPase ARIP4-like	PANTHER	PTHR45797	RAD54-LIKE	coord: 1..96
None	No IPR available	PANTHER	PTHR45797:SF1	RAD54-LIKE	coord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0022368.1	IVF0022368.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000781	chromosome, telomeric region
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0046872	metal ion binding