IVF0022328 (gene) Melon (IVF77) v1

Overview


Name	IVF0022328
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag-pol polyprotein
Location	chr11: 21128522 .. 21128953 (+)
RNA-Seq Expression	IVF0022328
Synteny	IVF0022328

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCAAGAGCCTCCTCGTCATAGAAAGTTGGTCCAAAAGAGACCACCTGATGATGAATGGGTCTCCTCACCGCGTTACATCAGAGATCAAACTCCCTTGCCTTCAAAACACAATAATGATGAGTCTACCCCTCCTCCAAGAGATAACACCCCTCTTTCTCCACCCGAAAGGACTCCAACTCTACAACCTCTCTCCATTACAAAAAGACCTACCGCTTCCATCTCCACCCAAATCCCCCATCTCCCCAGTCAGATGAGTCCTAGGCTGACTATTAATCCCAAAACAACCATCCCACATCTATCACCTTCACCTCCCACTAATCACCCAAAAACAACCAACTACCACGCTCTAACCTTAACGTGCCTTTACCTGACCCTAACGTTGTTCAACATGAAGTCCCTGTTATTGAGTTATCTGAATGGGACATGA

mRNA sequence

ATGGATCAAGAGCCTCCTCGTCATAGAAAGTTGGTCCAAAAGAGACCACCTGATGATGAATGGGTCTCCTCACCGCGTTACATCAGAGATCAAACTCCCTTGCCTTCAAAACACAATAATGATGAGTCTACCCCTCCTCCAAGAGATAACACCCCTCTTTCTCCACCCGAAAGGACTCCAACTCTACAACCTCTCTCCATTACAAAAAGACCTACCGCTTCCATCTCCACCCAAATCCCCCATCTCCCCAGTCAGATGAGTCCTAGGCTGACTATTAATCCCAAAACAACCATCCCACATCTATCACCTTCACCTCCCACTAATCACCCAAAAACAACCAACTACCACGCTCTAACCTTAACGTGCCTTTACCTGACCCTAACGTTGTTCAACATGAAGTCCCTGTTATTGAGTTATCTGAATGGGACATGA

Coding sequence (CDS)

ATGGATCAAGAGCCTCCTCGTCATAGAAAGTTGGTCCAAAAGAGACCACCTGATGATGAATGGGTCTCCTCACCGCGTTACATCAGAGATCAAACTCCCTTGCCTTCAAAACACAATAATGATGAGTCTACCCCTCCTCCAAGAGATAACACCCCTCTTTCTCCACCCGAAAGGACTCCAACTCTACAACCTCTCTCCATTACAAAAAGACCTACCGCTTCCATCTCCACCCAAATCCCCCATCTCCCCAGTCAGATGAGTCCTAGGCTGACTATTAATCCCAAAACAACCATCCCACATCTATCACCTTCACCTCCCACTAATCACCCAAAAACAACCAACTACCACGCTCTAACCTTAACGTGCCTTTACCTGACCCTAACGTTGTTCAACATGAAGTCCCTGTTATTGAGTTATCTGAATGGGACATGA

Protein sequence

MDQEPPRHRKLVQKRPPDDEWVSSPRYIRDQTPLPSKHNNDESTPPPRDNTPLSPPERTPTLQPLSITKRPTASISTQIPHLPSQMSPRLTINPKTTIPHLSPSPPTNHPKTTNYHALTLTCLYLTLTLFNMKSLLLSYLNGT

Homology

[Close]

BLAST of IVF0022328 vs. ExPASy TrEMBL
Match: A0A5A7V365 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00460 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-05
Identity = 45/97 (46.39%), Postives = 52/97 (53.61%), Query Frame = 0


Query: 16  PPDDEWVSSPRYIRDQTPLPSKHNNDESTPPPRDNTPLSPPERTP--TLQPLSITKRPTA 75
           P  D  V SPRYI+D TP P K  ND   PPP+DNT  SPP++     L P +I   P  
Sbjct: 805 PAIDHDVYSPRYIKDPTPSPPK--NDNPLPPPKDNTSTSPPKKIEILPLPPQNILLPPPP 864

Query: 76  SISTQIPHLPSQMSPRLTINPKTTIPHLSPSPPTNHP 111
                 P   SQ S RLT+NPKTT P  SPS   + P
Sbjct: 865 PPPKSSPISYSQRSSRLTVNPKTTTPQSSPSKSPSIP 899

[Close]

BLAST of IVF0022328 vs. NCBI nr
Match: KAA0060315.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK22065.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 1.53e-07
Identity = 44/91 (48.35%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 16  PPDDEWVSSPRYIRDQTPLPSKHNNDESTPPPRDNTPLSPPERTPTLQ--PLSITKRPTA 75
           P  D  V SPRYI+D TP P K  ND   PPP+DNT  SPP++   L   P +I   P  
Sbjct: 805 PAIDHDVYSPRYIKDPTPSPPK--NDNPLPPPKDNTSTSPPKKIEILPLPPQNILLPPPP 864

Query: 76  SISTQIPHLPSQMSPRLTINPKTTIPHLSPS 104
                 P   SQ S RLT+NPKTT P  SPS
Sbjct: 865 PPPKSSPISYSQRSSRLTVNPKTTTPQSSPS 893

The following BLAST results are available for this feature:

BLAST of IVF0022328 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0022328 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V365	1.2e-05	46.39	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G...	[more]

BLAST of IVF0022328 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060315.1	1.53e-07	48.35	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK22065.1 gag-pol polyprotein [...	[more]

BLAST of IVF0022328 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0022328.1	IVF0022328.1	mRNA