IVF0022272 (gene) Melon (IVF77) v1

Overview
NameIVF0022272
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGlutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial
Locationchr04: 1343416 .. 1347267 (+)
RNA-Seq ExpressionIVF0022272
SyntenyIVF0022272
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTCAACGATCATTTTTCTTAAAAAAAAAGTTTGAATCATTTATGATCTTGAGTTCTTAAAATGGGTGTTTTAGACAAATTGAATATTGTAAGGGTAACTTTAACTTGTAGATGTGGCGCAACTCGTGAGGATTGTGATAGAGATTAGAGAAAGGGTCGAATATCAAAATTTGGCGAATAGATTTCATTTTGGTTTCCGCCATTAGTAGTTGGATCGAAATGGGAAGTAAAGCTCTTCCTCTGCTCAAAGGAGCTTCATCATTCCCATCGTTAAAGCGCCAAATCTTCATCTCTACCGCCTTCCATTCCCTTCCTGTTTCCAACATCACAATCCGAAAGTCTTCGACTGCTTCAGGAGTTTTAGCTTCTCTTCAACCTCCTGATGTTCCTCGTTTAGCTCAAACAGCTCGAATCTCTCTCACTCCCACTCAGGTATGCAACGCCCTCACCTCCTCTATCTTTACTTCAATCCTTTATTCACTAACATCTGGTTATTCTTAATTCAGGTTGAAGAATTTGCGCCTAAAATTACTCAAGTTGTTGACTGGTGAGTTCCTCCCTCTCTCTCTCTCTCTCTCTCGCTCGCACACGCATATTCACAGACTCTTAGAAAGTAGTAAACCTTGAAACACGTTAGTGTATGATAATGCTGAAACCAAGATTAAGATTAAGATTAAGATTAGAAGTCTGTGGCTTCTGTAGGCATCGTTTAGAGTTAGTTATTGGAAATCTTATCTTGTTTTCTTAGGTGAGATTGAGAAGATGGTTTGCGTTGGACGTAGGAGGTGGATTATTGTCTTTGATGGTTTTGGACTGGTTTTTAGGTAAATTACGATGAGACAATGGCCTGTTATGCCCTAAAAAATCTTCACCAAGAGGTTGTATAATGAGATTCTATGAATTGGCGTTTACTTCTCCCAACTGAAAAAAGAGATTGAGTTTTATGCGAGATTGCATAATTTGTCTGGTTTACTTGATCGACCGTGACTTTTAGGGAGATATAAAAGGAACGAGAAGAAACCGGGCAGTAGGCAACTTCTTAGGAGACAGAAGTTAAAGTATTTGTCATCTTTGCAACCTTTTTTACATTAACTTGGGGGTATAAGATAATCTTATTGGCGAATTGGATCATTGGAATGCAGTTCTGGTAGTTCCTTTTTCCCCCTCTTTGAAGTTAAGAATGCTCAAACGTTGAAACTTCCGCATAATGTTCATTGTTGATCTTTTTAACAATCTGTAAGCATGAAGCTCATGGACCTAGAGTACCTACAAATTGGATTACCAGTCTTGTTACGTTGGAAATCCAAGATACCCATGTTTTGTGGTACAAGCATTCTACTAGCCTCTTACTCTCTTTCAAGTTATAACTCTTCAGTCAATGAAATTGTTTCCTATTAAAAAAGAAACGGTCACAACTCTTTATTCGAAGGGAAAATCATCTCAAGGCTTTGATAATATCAAGTATTCAGGATGGCCAAAGGGGATAACAGTCAGCAAACTTAATACTGGTAGCCATCGATAATATTGATCATAATACCCCTGCACACCCCCCCCCCCCCACCCCCACCCCCACCCCCACCCACACACACACACACACACACAGAAAAAAAAAAAAAACACAAAAAATACAAAATTTTGTCATGTATGTTCGTCAACTGCCCAATTCAGTTGATAATAATAATCAATATCCATAATTTCTTCTTCAAACACTAAAATGGTGAAAAGTTACAAAAGGTATGTTCAAGGGGATTATTGAAGACAGATCCAATTAGTTTTAAGAAGCTTTATATAACCATTGTTCGCACGAATAACAGTGCACCAAGGTAAACCAAAAAGAATGAATTAAATCCCAAACTTCCTATATGACTCCCTTGACAGCATAAGATCAAATGACTGAAGAATTTGGGAGCGAGGTATGGTCACACAAAAGCTGTTCAATGCAGTGGGAAGGTTTCATTAGATAGCACCCAGACAAATCAAAAGAGTAAAAGAGAATTGCAGATTTTTTTTTTTTTTTTTTTTGGAGAAAGGACACTGTAGGGAGAGATGACAACAATTTCCTACATCTTCCTGCCAGAGAACGCACCAGCTTGAGAGGAGAGAACGTTGGGTTCCTTTTTTGAACCTTTGCAAAATTTGAGTCCCCATGAGCCGGGGTCAATCCAAAAATCTCACCTTTTTGGACACTTTCTTCCTCCAACTAACCTTAATTAATGGCTCTGAAAGGAAACGGCCCCAATATTCTTTCATTTTTTTTCAATGAAAGTTGTCAGAATCCGAACTCCAACAATAAAATAGCCATTTATTCAGGAGTTCAAACATTTTCCAGAAGAAATGGCAGATCCATTCCCTCAAGATCTCTCTCTATAGCCCTTCTGAACTTTAGGTTCCACATGAGCCACATTCCTGACCCGGATGGAGTCAAAATTAATGAGTTGGAAATTTTGGAGAACTTTTTCGTTAGAGGTCGTGAGGTGTCCATTGATCTGACCAAAAGAAATTGACACAAATATCCACCTAACATTCATAATCACCTTCATCCTCTGTCTACCTCTAGCTTTCAGGCTGTTTTACCCTGTTTGATAACTTTAATATGATAACATTACGTTTCAGGTTTGGGCAGCTCCAGACAGTTGATCTTCAAAGTATTGAACCATCCATTAGAGCAGGTGCATGCACCCACTCGCAGAAGTTCCTTGTTGTCGATCATTTTGCAACTTGTTTGTTGTTTTTCTTCTAGCATGCCTTTGCTTGTTTCACTGTTAATGTTGACTTAAAATATCACAAATCTTCTCAAAACGGAAATTTTATATCACACAATCATTATTTTTTTCATTAGAAAGTAATAATCATAAGACATGGAGATATTGTAACTTGCCACAGAAACTAGTGAAATAATGAAGCGCATCAAGGAGGGGACAGCAGCAGTAGGAATGCTTATGATTTGTCTTCTCTTGCTACAGAAACTTGTGCTATCAATTGCTATATAACTGATTATGATTTCAGAATCCCACCCCCACCCACAGATGTTTGTAAATGTTTCTCGAAGAGACCATTTTGAGCATGAATTATTTTTAAGTGATCAAAATGCTAAAATCACAGGATCTTTTGGCCAAACTAGTTCGGCAATTTTTTTTTTATTTTAAAATACAACAACAGGATGGGGGATTGAACTTCCAACCTCTATCGTACCAATATCACTAAGTCAAACTCACTTTGCGTAGTGCAACAAAATTGTCACTAATTTTTCTACTACTATGTACAGACACTGAAGGTGGCAATCAACGGAATGACGTTCCTGAAACATTTGAAAATAGGTAACTTGGTTACTTTGCAACTTGGGCTATTACAACATTTGGCAGGAAACTTGTTCATAACTTTTTTTTTTCTTTTCTTGACCTCAGAGAGGCCATGATTGGCGCAGTTCCAGTATTCGATGAGCCGTATATCAAAGTTCCCAAAGTTCTGAATAAGGAGTAGTTGCTAAGGTTAGATTGGTTGTTTCATCTGTCTCATCATTCATTATTGGCATAGTCTTCAACACCTTATGTCATTGAAATGATTAATTCTGCTACAGGTTGTTACTACATGATATTTGAATTAAAATTTGAACTAATCATCCATTAATCTTAACCTTAGTTCGAATGTGTAATTCATATCTAGCTAAGGGGGCGGATTACCACACATTCTTGTCGTCACATGAGATATTTATCCAAAAAAATTCTCTGTTGCGAATGGGACCTGTCCTCATTATTTATCTTATCAACTCTCCTTGAAGAGATGATGGAGACATATTCAGGTTAATTTAATTTAGCCTCATCATCTTAGTCTAAACTTAGATGAATCTTCCCC

mRNA sequence

GTTCAACGATCATTTTTCTTAAAAAAAAAGTTTGAATCATTTATGATCTTGAGTTCTTAAAATGGGTGTTTTAGACAAATTGAATATTGTAAGGGTAACTTTAACTTGTAGATGTGGCGCAACTCGTGAGGATTGTGATAGAGATTAGAGAAAGGGTCGAATATCAAAATTTGGCGAATAGATTTCATTTTGGTTTCCGCCATTAGTAGTTGGATCGAAATGGGAAGTAAAGCTCTTCCTCTGCTCAAAGGAGCTTCATCATTCCCATCGTTAAAGCGCCAAATCTTCATCTCTACCGCCTTCCATTCCCTTCCTGTTTCCAACATCACAATCCGAAAGTCTTCGACTGCTTCAGGAGTTTTAGCTTCTCTTCAACCTCCTGATGTTCCTCGTTTAGCTCAAACAGCTCGAATCTCTCTCACTCCCACTCAGGTTGAAGAATTTGCGCCTAAAATTACTCAAGTTGTTGACTGGTTTGGGCAGCTCCAGACAGTTGATCTTCAAAGTATTGAACCATCCATTAGAGCAGACACTGAAGGTGGCAATCAACGGAATGACGTTCCTGAAACATTTGAAAATAGAGAGGCCATGATTGGCGCAGTTCCAGTATTCGATGAGCCGTATATCAAAGTTCCCAAAGTTCTGAATAAGGAGTAGTTGCTAAGGTTAGATTGGTTGTTTCATCTGTCTCATCATTCATTATTGGCATAGTCTTCAACACCTTATGTCATTGAAATGATTAATTCTGCTACAGGTTGTTACTACATGATATTTGAATTAAAATTTGAACTAATCATCCATTAATCTTAACCTTAGTTCGAATGTGTAATTCATATCTAGCTAAGGGGGCGGATTACCACACATTCTTGTCGTCACATGAGATATTTATCCAAAAAAATTCTCTGTTGCGAATGGGACCTGTCCTCATTATTTATCTTATCAACTCTCCTTGAAGAGATGATGGAGACATATTCAGGTTAATTTAATTTAGCCTCATCATCTTAGTCTAAACTTAGATGAATCTTCCCC

Coding sequence (CDS)

ATGGGAAGTAAAGCTCTTCCTCTGCTCAAAGGAGCTTCATCATTCCCATCGTTAAAGCGCCAAATCTTCATCTCTACCGCCTTCCATTCCCTTCCTGTTTCCAACATCACAATCCGAAAGTCTTCGACTGCTTCAGGAGTTTTAGCTTCTCTTCAACCTCCTGATGTTCCTCGTTTAGCTCAAACAGCTCGAATCTCTCTCACTCCCACTCAGGTTGAAGAATTTGCGCCTAAAATTACTCAAGTTGTTGACTGGTTTGGGCAGCTCCAGACAGTTGATCTTCAAAGTATTGAACCATCCATTAGAGCAGACACTGAAGGTGGCAATCAACGGAATGACGTTCCTGAAACATTTGAAAATAGAGAGGCCATGATTGGCGCAGTTCCAGTATTCGATGAGCCGTATATCAAAGTTCCCAAAGTTCTGAATAAGGAGTAG

Protein sequence

MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE
Homology
[Close]
BLAST of IVF0022272 vs. ExPASy Swiss-Prot
Match: D7STK2 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Vitis vinifera OX=29760 GN=GATC PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.8e-40
Identity = 89/145 (61.38%), Postives = 110/145 (75.86%), Query Frame = 0 

Query: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA 60
           MGS+AL LLK  ++    +  +F S +      S   IR S+ +    ++L PPD+PRLA
Sbjct: 1   MGSRALLLLKATTA----ETLLFTSKS----TFSKALIRNSTRSFSTRSALLPPDLPRLA 60

Query: 61  QTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFEN 120
           +TARISLTP +VEEFAPKI QV+DWFGQLQ VDLQSIEPSIRADTEG N R+D PETFEN
Sbjct: 61  ETARISLTPHEVEEFAPKIRQVIDWFGQLQAVDLQSIEPSIRADTEGDNLRDDSPETFEN 120

Query: 121 REAMIGAVPVFDEPYIKVPKVLNKE 146
           REA+I A+P ++EPY+KVPKVLNK+
Sbjct: 121 REAIIAAIPSYEEPYLKVPKVLNKD 137

[Close]
BLAST of IVF0022272 vs. ExPASy Swiss-Prot
Match: B9RRX2 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Ricinus communis OX=3988 GN=GATC PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.9e-37
Identity = 89/146 (60.96%), Postives = 106/146 (72.60%), Query Frame = 0 

Query: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSN-ITIRKSSTASGVLASLQPPDVPRL 60
           MGS+AL LLK A     LK QI         P S  +T R+ S  +   +SLQPPDV RL
Sbjct: 1   MGSRALLLLKVAL---PLKHQIKCLNYTKITPASELLTKRRFSIKATNGSSLQPPDVSRL 60

Query: 61  AQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFE 120
           A+TARISL   +VEEFAPKI QV+DWFGQLQ VDL S+EP+IRAD+EG N R+DVPETF 
Sbjct: 61  AETARISLNQNEVEEFAPKIRQVIDWFGQLQAVDLNSVEPAIRADSEGENLRDDVPETFS 120

Query: 121 NREAMIGAVPVFDEPYIKVPKVLNKE 146
            REA+I AVP +++PY+KVPKVLNKE
Sbjct: 121 EREAIIAAVPSYEKPYVKVPKVLNKE 143

[Close]
BLAST of IVF0022272 vs. ExPASy Swiss-Prot
Match: B9INH0 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Populus trichocarpa OX=3694 GN=GATC PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.0e-35
Identity = 87/146 (59.59%), Postives = 106/146 (72.60%), Query Frame = 0 

Query: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNI-TIRKSSTASGVLASLQPPDVPRL 60
           MGS+A+ LLKG S  P     +F+       P  +I      +TA+G  +SL+PPDV RL
Sbjct: 1   MGSRAVLLLKGPS--PPKHSILFLLNHKKISPAPSIRRFTTKATANG--SSLEPPDVARL 60

Query: 61  AQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFE 120
           A+TARISLTP QVEEF PKI QV+DW   L +VDL S+EPSIRADTEG N R+D PETFE
Sbjct: 61  AETARISLTPQQVEEFGPKIRQVIDWHA-LLSVDLDSVEPSIRADTEGDNLRHDNPETFE 120

Query: 121 NREAMIGAVPVFDEPYIKVPKVLNKE 146
           NREA+I AVP +++PY+KVPKVLNKE
Sbjct: 121 NREAIIAAVPNYEDPYVKVPKVLNKE 141

[Close]
BLAST of IVF0022272 vs. ExPASy Swiss-Prot
Match: A2XK57 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=GATC PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.1e-32
Identity = 68/106 (64.15%), Postives = 85/106 (80.19%), Query Frame = 0 

Query: 41  SSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPS 100
           ++ A+    +L+PPD+PRLA  ARISL+P + EEFAPKI QVVDWFGQLQ VDL+S+EPS
Sbjct: 48  AAAAAAGSGALEPPDLPRLANAARISLSPEEAEEFAPKIRQVVDWFGQLQAVDLESVEPS 107

Query: 101 IRADTEGGNQ-RNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE 146
           +RA T  GN  R D PETF NR+A+I +VP +D+PYIKVP+VLNKE
Sbjct: 108 LRAGTAAGNSLREDRPETFTNRDAIIESVPSYDDPYIKVPRVLNKE 153

[Close]
BLAST of IVF0022272 vs. ExPASy Swiss-Prot
Match: Q7XZZ1 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=GATC PE=2 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.1e-32
Identity = 68/106 (64.15%), Postives = 85/106 (80.19%), Query Frame = 0 

Query: 41  SSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPS 100
           ++ A+    +L+PPD+PRLA  ARISL+P + EEFAPKI QVVDWFGQLQ VDL+S+EPS
Sbjct: 48  AAAAAAGSGALEPPDLPRLANAARISLSPEEAEEFAPKIRQVVDWFGQLQAVDLESVEPS 107

Query: 101 IRADTEGGNQ-RNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE 146
           +RA T  GN  R D PETF NR+A+I +VP +D+PYIKVP+VLNKE
Sbjct: 108 LRAGTAAGNSLREDRPETFTNRDAIIESVPSYDDPYIKVPRVLNKE 153

[Close]
BLAST of IVF0022272 vs. ExPASy TrEMBL
Match: A0A5A7T6R5 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucumis melo var. makuwa OX=1194695 GN=GATC PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 1.9e-72
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0 

Query: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA 60
           MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA
Sbjct: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA 60

Query: 61  QTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFEN 120
           QTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFEN
Sbjct: 61  QTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFEN 120

Query: 121 REAMIGAVPVFDEPYIKVPKVLNKE 146
           REAMIGAVPVFDEPYIKVPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of IVF0022272 vs. ExPASy TrEMBL
Match: A0A1S3CQE8 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103503618 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 1.9e-72
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0 

Query: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA 60
           MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA
Sbjct: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA 60

Query: 61  QTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFEN 120
           QTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFEN
Sbjct: 61  QTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFEN 120

Query: 121 REAMIGAVPVFDEPYIKVPKVLNKE 146
           REAMIGAVPVFDEPYIKVPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of IVF0022272 vs. ExPASy TrEMBL
Match: A0A0A0LJU5 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucumis sativus OX=3659 GN=GATC PE=3 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.0e-69
Identity = 138/145 (95.17%), Postives = 142/145 (97.93%), Query Frame = 0 

Query: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA 60
           MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNI+IR SSTASG+ ASLQPPDVPRLA
Sbjct: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLA 60

Query: 61  QTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFEN 120
           QTARISLTPTQ EEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGG+QRND+PETFEN
Sbjct: 61  QTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGSQRNDIPETFEN 120

Query: 121 REAMIGAVPVFDEPYIKVPKVLNKE 146
           REAMIGAVPVFDEPYIKVPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of IVF0022272 vs. ExPASy TrEMBL
Match: A0A6J1CQ90 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111013151 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.2e-58
Identity = 122/147 (82.99%), Postives = 131/147 (89.12%), Query Frame = 0 

Query: 1   MGSKALPLLKGASSFPSLKRQIFISTA--FHSLPVSNITIRKSSTASGVLASLQPPDVPR 60
           MGSKALPLLKGA S PSL+RQIFI     FH+LP+S+  IRK ST   + ASLQPPDVPR
Sbjct: 1   MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNKIRKCSTTPRIRASLQPPDVPR 60

Query: 61  LAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETF 120
           LA+TARISLTPT+VEEFAPKI QVVDWFGQLQTVDLQSIEPSIRADTEGGNQRND+ ETF
Sbjct: 61  LAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDISETF 120

Query: 121 ENREAMIGAVPVFDEPYIKVPKVLNKE 146
           ENREAMIGAVPVFDEPYI+VPKVLNKE
Sbjct: 121 ENREAMIGAVPVFDEPYIRVPKVLNKE 147

[Close]
BLAST of IVF0022272 vs. ExPASy TrEMBL
Match: A0A6J1FM33 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111446647 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 2.0e-58
Identity = 122/145 (84.14%), Postives = 130/145 (89.66%), Query Frame = 0 

Query: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA 60
           MGS AL LLKGASS PSL  QIFIST+ +SLPVS+I IRK STA G+ ASLQPPDVPRLA
Sbjct: 1   MGSGALRLLKGASSLPSLNPQIFISTSLNSLPVSSIRIRKCSTAPGIRASLQPPDVPRLA 60

Query: 61  QTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFEN 120
           +TARISL P +VEEFAPKI QVVDWFGQLQ VDLQSIEPSIRADTEGGNQR+DV ETFEN
Sbjct: 61  ETARISLNPNEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120

Query: 121 REAMIGAVPVFDEPYIKVPKVLNKE 146
           REAMIGAVPVFDEPYI+VPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145

[Close]
BLAST of IVF0022272 vs. NCBI nr
Match: XP_008466091.1 (PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucumis melo] >KAA0038633.1 glutamyl-tRNA(Gln) amidotransferase subunit C [Cucumis melo var. makuwa] >TYK31232.1 glutamyl-tRNA(Gln) amidotransferase subunit C [Cucumis melo var. makuwa])

HSP 1 Score: 283 bits (725), Expect = 3.20e-96
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0 

Query: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA 60
           MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA
Sbjct: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA 60

Query: 61  QTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFEN 120
           QTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFEN
Sbjct: 61  QTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFEN 120

Query: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145
           REAMIGAVPVFDEPYIKVPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of IVF0022272 vs. NCBI nr
Match: XP_004136231.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucumis sativus] >KGN60306.1 hypothetical protein Csa_001068 [Cucumis sativus])

HSP 1 Score: 273 bits (699), Expect = 2.96e-92
Identity = 138/145 (95.17%), Postives = 142/145 (97.93%), Query Frame = 0 

Query: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA 60
           MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNI+IR SSTASG+ ASLQPPDVPRLA
Sbjct: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNISIRNSSTASGISASLQPPDVPRLA 60

Query: 61  QTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFEN 120
           QTARISLTPTQ EEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGG+QRND+PETFEN
Sbjct: 61  QTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGSQRNDIPETFEN 120

Query: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145
           REAMIGAVPVFDEPYIKVPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of IVF0022272 vs. NCBI nr
Match: XP_038897282.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Benincasa hispida] >XP_038897283.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Benincasa hispida])

HSP 1 Score: 254 bits (650), Expect = 8.77e-85
Identity = 130/145 (89.66%), Postives = 135/145 (93.10%), Query Frame = 0 

Query: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA 60
           MGSKALPLLKGASS PSLK +IFIST  HSLP S I IRK STAS +LASLQPPDVPRLA
Sbjct: 1   MGSKALPLLKGASSCPSLKLRIFISTGLHSLPASLIRIRKCSTASRILASLQPPDVPRLA 60

Query: 61  QTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFEN 120
           +TARISLTPTQVEEFAPKI QVVDWFGQLQTVDLQSIEP+IRADTEGGNQRND+PETFEN
Sbjct: 61  ETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPAIRADTEGGNQRNDIPETFEN 120

Query: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145
           REAMIGAVPVFDEPYIKVPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of IVF0022272 vs. NCBI nr
Match: XP_022143239.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Momordica charantia] >XP_022143247.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 238 bits (606), Expect = 4.78e-78
Identity = 122/147 (82.99%), Postives = 131/147 (89.12%), Query Frame = 0 

Query: 1   MGSKALPLLKGASSFPSLKRQIFISTAF--HSLPVSNITIRKSSTASGVLASLQPPDVPR 60
           MGSKALPLLKGA S PSL+RQIFI   F  H+LP+S+  IRK ST   + ASLQPPDVPR
Sbjct: 1   MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNKIRKCSTTPRIRASLQPPDVPR 60

Query: 61  LAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETF 120
           LA+TARISLTPT+VEEFAPKI QVVDWFGQLQTVDLQSIEPSIRADTEGGNQRND+ ETF
Sbjct: 61  LAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDISETF 120

Query: 121 ENREAMIGAVPVFDEPYIKVPKVLNKE 145
           ENREAMIGAVPVFDEPYI+VPKVLNKE
Sbjct: 121 ENREAMIGAVPVFDEPYIRVPKVLNKE 147

[Close]
BLAST of IVF0022272 vs. NCBI nr
Match: XP_023521629.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo] >XP_023521637.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 237 bits (604), Expect = 9.02e-78
Identity = 122/145 (84.14%), Postives = 130/145 (89.66%), Query Frame = 0 

Query: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA 60
           M S AL LLKGASS PSL  QIFIST+ +SLPVSNI IRK STA G+ ASLQPPDVPRLA
Sbjct: 1   MASGALRLLKGASSLPSLNPQIFISTSLNSLPVSNIRIRKCSTAPGIRASLQPPDVPRLA 60

Query: 61  QTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFEN 120
           +TARISL P++VEEFAPKI QVVDWFGQLQ VDLQSIEPSIRADTEGGNQR+DV ETFEN
Sbjct: 61  ETARISLNPSEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120

Query: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145
           REAMIGAVPVFDEPYI+VPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145

[Close]
BLAST of IVF0022272 vs. TAIR 10
Match: AT4G32915.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translational fidelity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glu-tRNAGln amidotransferase, C subunit (InterPro:IPR003837); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 134.8 bits (338), Expect = 5.5e-32
Identity = 63/111 (56.76%), Postives = 86/111 (77.48%), Query Frame = 0 

Query: 35  NITIRKSSTASGVLASLQPPDVPRLAQTARISLTPTQVEEFAPKITQVVDWFGQLQTVDL 94
           N  I +S ++    + LQPPDV RLAQTARISLTP ++EE   KI +V+DWFGQLQ VD+
Sbjct: 45  NHRIARSYSSDSDSSVLQPPDVARLAQTARISLTPAEIEECETKIRRVIDWFGQLQQVDV 104

Query: 95  QSIEPSIRADTEGGNQRNDVPETFENREAMIGAVPVFDEPYIKVPKVLNKE 146
            S+EP+IRA+ +GGN R D PETF+NR+++  ++P F++ Y+KVPK+LNKE
Sbjct: 105 NSVEPAIRAEMDGGNLREDAPETFDNRDSIRASIPSFEDAYLKVPKILNKE 155

The following BLAST results are available for this feature:
BLAST of IVF0022272 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
D7STK21.8e-4061.38Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Vi... [more]
B9RRX21.9e-3760.96Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Ri... [more]
B9INH01.0e-3559.59Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Po... [more]
A2XK574.1e-3264.15Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Or... [more]
Q7XZZ14.1e-3264.15Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Or... [more]
BLAST of IVF0022272 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T6R51.9e-72100.00Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
A0A1S3CQE81.9e-72100.00Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
A0A0A0LJU52.0e-6995.17Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
A0A6J1CQ901.2e-5882.99Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Mo... [more]
A0A6J1FM332.0e-5884.14Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
BLAST of IVF0022272 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008466091.13.20e-96100.00PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochon... [more]
XP_004136231.12.96e-9295.17glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucu... [more]
XP_038897282.18.77e-8589.66glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Beni... [more]
XP_022143239.14.78e-7882.99glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Momo... [more]
XP_023521629.19.02e-7884.14glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucu... [more]
BLAST of IVF0022272 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G32915.15.5e-3256.76FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translation... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003837Glu-tRNAGln amidotransferase C subunitTIGRFAMTIGR00135TIGR00135coord: 55..142
e-value: 3.3E-15
score: 54.2
IPR003837Glu-tRNAGln amidotransferase C subunitPFAMPF02686Glu-tRNAGlncoord: 67..138
e-value: 6.7E-9
score: 35.9
IPR003837Glu-tRNAGln amidotransferase C subunitPANTHERPTHR15004UNCHARACTERIZEDcoord: 16..145
IPR003837Glu-tRNAGln amidotransferase C subunitHAMAPMF_00122GatCcoord: 50..143
score: 18.682674
NoneNo IPR availableGENE3D1.10.20.60coord: 47..93
e-value: 1.3E-7
score: 33.5
IPR036113Glu-tRNAGln amidotransferase superfamily, subunit CSUPERFAMILY141000Glu-tRNAGln amidotransferase C subunitcoord: 51..141

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0022272.1IVF0022272.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0070681 glutaminyl-tRNAGln biosynthesis via transamidation
biological_process GO:0032543 mitochondrial translation
biological_process GO:0006450 regulation of translational fidelity
cellular_component GO:0009507 chloroplast
cellular_component GO:0030956 glutamyl-tRNA(Gln) amidotransferase complex
cellular_component GO:0005739 mitochondrion
molecular_function GO:0005524 ATP binding
molecular_function GO:0050567 glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
molecular_function GO:0016740 transferase activity