IVF0022251 (gene) Melon (IVF77) v1

Overview
NameIVF0022251
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPol protein
Locationchr04: 11902920 .. 11903159 (-)
RNA-Seq ExpressionIVF0022251
SyntenyIVF0022251
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAGGAAGTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTGGAAATTGATGAAAACTTGAGCTATACTGAACAACCTGTTGAGGTGCTTGCTAGAGAGGTGAAAACGTTGAGGAATAAAGAAATCCCTCTGGTTAAAGTCTTGTGGCGGAATCACCGGGTAGAAGAGGCTACGTGGGAGCGAGAAGATGACATGAGGTCCCGTTATCCCGAACTGTTCGAGGGATAA

mRNA sequence

ATGTTGAGGAAGTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTGGAAATTGATGAAAACTTGAGCTATACTGAACAACCTGTTGAGGTGCTTGCTAGAGAGGTGAAAACGTTGAGGAATAAAGAAATCCCTCTGGTTAAAGTCTTGTGGCGGAATCACCGGGTAGAAGAGGCTACGTGGGAGCGAGAAGATGACATGAGGTCCCGTTATCCCGAACTGTTCGAGGGATAA

Coding sequence (CDS)

ATGTTGAGGAAGTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTGGAAATTGATGAAAACTTGAGCTATACTGAACAACCTGTTGAGGTGCTTGCTAGAGAGGTGAAAACGTTGAGGAATAAAGAAATCCCTCTGGTTAAAGTCTTGTGGCGGAATCACCGGGTAGAAGAGGCTACGTGGGAGCGAGAAGATGACATGAGGTCCCGTTATCCCGAACTGTTCGAGGGATAA

Protein sequence

MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEG
Homology
BLAST of IVF0022251 vs. ExPASy TrEMBL
Match: A0A5A7T8G8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G00730 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.4e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0

Query: 1    MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60
            MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE
Sbjct: 1196 MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 1255

Query: 61   ATWEREDDMRSRYPELFEG 80
            ATWEREDDMRSRYPELFEG
Sbjct: 1256 ATWEREDDMRSRYPELFEG 1274

BLAST of IVF0022251 vs. ExPASy TrEMBL
Match: A0A5A7SSB3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold28300G00010 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 7.0e-37
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0

Query: 1   MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60
           MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLW+NHRVEE
Sbjct: 190 MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWQNHRVEE 249

Query: 61  ATWEREDDMRSRYPELFEG 80
           ATWEREDDMRSRYPELFEG
Sbjct: 250 ATWEREDDMRSRYPELFEG 268

BLAST of IVF0022251 vs. ExPASy TrEMBL
Match: A0A5A7UZZ4 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00810 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 7.0e-37
Identity = 76/79 (96.20%), Postives = 79/79 (100.00%), Query Frame = 0

Query: 1   MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60
           MLRKYVPDPSHVVDYEPLEIDEN+SYTEQPVE+LAREVKTLRNKEIPLVKVLWRNHR+EE
Sbjct: 474 MLRKYVPDPSHVVDYEPLEIDENMSYTEQPVEILAREVKTLRNKEIPLVKVLWRNHRIEE 533

Query: 61  ATWEREDDMRSRYPELFEG 80
           ATWEREDDMRSRYPELFEG
Sbjct: 534 ATWEREDDMRSRYPELFEG 552

BLAST of IVF0022251 vs. ExPASy TrEMBL
Match: A0A5A7UDB1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00190 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 9.1e-37
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0

Query: 1    MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60
            MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLR+KEIPLVKVLWRNHRVEE
Sbjct: 1384 MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRSKEIPLVKVLWRNHRVEE 1443

Query: 61   ATWEREDDMRSRYPELFEG 80
            ATWEREDDMRSRYPELFEG
Sbjct: 1444 ATWEREDDMRSRYPELFEG 1462

BLAST of IVF0022251 vs. ExPASy TrEMBL
Match: A0A5A7TGX4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold529G00100 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 9.1e-37
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 0

Query: 1    MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60
            MLRKYVPDPSHVVDYEPLEIDENLSY EQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE
Sbjct: 1474 MLRKYVPDPSHVVDYEPLEIDENLSYAEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 1533

Query: 61   ATWEREDDMRSRYPELFEG 80
            ATWEREDDMRSRYPELFEG
Sbjct: 1534 ATWEREDDMRSRYPELFEG 1552

BLAST of IVF0022251 vs. NCBI nr
Match: KAA0043066.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 159 bits (402), Expect = 4.72e-49
Identity = 77/79 (97.47%), Postives = 77/79 (97.47%), Query Frame = 0

Query: 1  MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60
          MLRKYVPDPSHVVDYEPLEIDENLSY EQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE
Sbjct: 1  MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60

Query: 61 ATWEREDDMRSRYPELFEG 79
          ATWEREDDMR RYPELFEG
Sbjct: 61 ATWEREDDMRFRYPELFEG 79

BLAST of IVF0022251 vs. NCBI nr
Match: KAA0054732.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 161 bits (407), Expect = 1.07e-48
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0

Query: 1   MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60
           MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE
Sbjct: 84  MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 143

Query: 61  ATWEREDDMRSRYPELFE 78
           ATWEREDDMRSRYPELFE
Sbjct: 144 ATWEREDDMRSRYPELFE 161

BLAST of IVF0022251 vs. NCBI nr
Match: KAA0053367.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 161 bits (407), Expect = 1.07e-48
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0

Query: 1   MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60
           MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE
Sbjct: 84  MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 143

Query: 61  ATWEREDDMRSRYPELFE 78
           ATWEREDDMRSRYPELFE
Sbjct: 144 ATWEREDDMRSRYPELFE 161

BLAST of IVF0022251 vs. NCBI nr
Match: KAA0059750.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 160 bits (404), Expect = 1.09e-48
Identity = 76/79 (96.20%), Postives = 78/79 (98.73%), Query Frame = 0

Query: 1   MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60
           MLRKYVPDPSHVVDYEPLEIDENLSY EQP+EVLAREVKTLRNKEIPLVKVLWRNHRVEE
Sbjct: 51  MLRKYVPDPSHVVDYEPLEIDENLSYVEQPIEVLAREVKTLRNKEIPLVKVLWRNHRVEE 110

Query: 61  ATWEREDDMRSRYPELFEG 79
           ATWEREDDMRSRYP+LFEG
Sbjct: 111 ATWEREDDMRSRYPDLFEG 129

BLAST of IVF0022251 vs. NCBI nr
Match: KAA0053161.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 161 bits (407), Expect = 1.24e-48
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0

Query: 1   MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60
           MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE
Sbjct: 89  MLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 148

Query: 61  ATWEREDDMRSRYPELFE 78
           ATWEREDDMRSRYPELFE
Sbjct: 149 ATWEREDDMRSRYPELFE 166

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T8G82.4e-37100.00Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36... [more]
A0A5A7SSB37.0e-3798.73Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold28300G00010 ... [more]
A0A5A7UZZ47.0e-3796.20Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00810 PE... [more]
A0A5A7UDB19.1e-3798.73Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold10... [more]
A0A5A7TGX49.1e-3798.73Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold52... [more]
Match NameE-valueIdentityDescription
KAA0043066.14.72e-4997.47pol protein [Cucumis melo var. makuwa][more]
KAA0054732.11.07e-48100.00pol protein [Cucumis melo var. makuwa][more]
KAA0053367.11.07e-48100.00pol protein [Cucumis melo var. makuwa][more]
KAA0059750.11.09e-4896.20pol protein [Cucumis melo var. makuwa][more]
KAA0053161.11.24e-48100.00DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46148FAMILY NOT NAMEDcoord: 1..77
NoneNo IPR availablePANTHERPTHR46148:SF33OS05G0296332 PROTEINcoord: 1..77
IPR016197Chromo-like domain superfamilySUPERFAMILY54160Chromo domain-likecoord: 7..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0022251.1IVF0022251.1mRNA