IVF0022250 (gene) Melon (IVF77) v1

Overview
NameIVF0022250
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr02: 5080406 .. 5080845 (-)
RNA-Seq ExpressionIVF0022250
SyntenyIVF0022250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAATATTGGTTCTCTCACTCCTATCTGCAGCAGCAATTTGATATTACCTTCAATTCGAGTTTTCTGTGCAGACATTAATGGCAGGATTCAGCATCCACAGGGCGATGTGGCTGTTTGTGGTGACTCTGGTGCTCCTGCTCGCAGTGGCCAGAGCTCAAGACGGTGCAGGACTTGCACCATTACCTGCTATGGATGCTGGGACTGGATTTCAGGTGACATTTTCGAATGGTGGAATTCTCCTATCAATGTTCATCTACCTCGTTGCGCTTCTCTGGCATTAGATACAAGATCTTCCTGCTTTCTCATTGATCAGTATGATTGGTTTTTGATGTTTTGTATGTATGTGTTATTGTCATTGTACTGGCGCTATTTTTTTGTTTATTTTTGGCCATATATTTGGGGCATTATTCTACATGCTTTTGGTCTGTAACCTCAGGGG

mRNA sequence

TAAATATTGGTTCTCTCACTCCTATCTGCAGCAGCAATTTGATATTACCTTCAATTCGAGTTTTCTGTGCAGACATTAATGGCAGGATTCAGCATCCACAGGGCGATGTGGCTGTTTGTGGTGACTCTGGTGCTCCTGCTCGCAGTGGCCAGAGCTCAAGACGGTGCAGGACTTGCACCATTACCTGCTATGGATGCTGGGACTGGATTTCAGGTGACATTTTCGAATGGTGGAATTCTCCTATCAATGTTCATCTACCTCGTTGCGCTTCTCTGGCATTAGATACAAGATCTTCCTGCTTTCTCATTGATCAGTATGATTGGTTTTTGATGTTTTGTATGTATGTGTTATTGTCATTGTACTGGCGCTATTTTTTTGTTTATTTTTGGCCATATATTTGGGGCATTATTCTACATGCTTTTGGTCTGTAACCTCAGGGG

Coding sequence (CDS)

ATGGCAGGATTCAGCATCCACAGGGCGATGTGGCTGTTTGTGGTGACTCTGGTGCTCCTGCTCGCAGTGGCCAGAGCTCAAGACGGTGCAGGACTTGCACCATTACCTGCTATGGATGCTGGGACTGGATTTCAGGTGACATTTTCGAATGGTGGAATTCTCCTATCAATGTTCATCTACCTCGTTGCGCTTCTCTGGCATTAG

Protein sequence

MAGFSIHRAMWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFIYLVALLWH
Homology
BLAST of IVF0022250 vs. ExPASy TrEMBL
Match: A0A5D3D5P4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00320 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.9e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0

Query: 1  MAGFSIHRAMWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFIY 60
          MAGFSIHRAMWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFIY
Sbjct: 14 MAGFSIHRAMWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFIY 73

Query: 61 LVALLWH 68
          LVALLWH
Sbjct: 74 LVALLWH 80

BLAST of IVF0022250 vs. ExPASy TrEMBL
Match: A0A0A0LXI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613500 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 9.8e-24
Identity = 63/67 (94.03%), Postives = 63/67 (94.03%), Query Frame = 0

Query: 1  MAGFSIHRAMWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFIY 60
          MAGFSIHRA WLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFI 
Sbjct: 1  MAGFSIHRAKWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFIS 60

Query: 61 LVALLWH 68
          LV LL H
Sbjct: 61 LVVLLLH 67

BLAST of IVF0022250 vs. NCBI nr
Match: KAA0059092.1 (hypothetical protein E6C27_scaffold601G00030 [Cucumis melo var. makuwa] >TYK18840.1 hypothetical protein E5676_scaffold204G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 132 bits (331), Expect = 2.01e-38
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0

Query: 1  MAGFSIHRAMWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFIY 60
          MAGFSIHRAMWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFIY
Sbjct: 14 MAGFSIHRAMWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFIY 73

Query: 61 LVALLWH 67
          LVALLWH
Sbjct: 74 LVALLWH 80

BLAST of IVF0022250 vs. NCBI nr
Match: KGN66478.1 (hypothetical protein Csa_007521 [Cucumis sativus])

HSP 1 Score: 119 bits (299), Expect = 1.07e-33
Identity = 63/67 (94.03%), Postives = 63/67 (94.03%), Query Frame = 0

Query: 1  MAGFSIHRAMWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFIY 60
          MAGFSIHRA WLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFI 
Sbjct: 1  MAGFSIHRAKWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFIS 60

Query: 61 LVALLWH 67
          LV LL H
Sbjct: 61 LVVLLLH 67

BLAST of IVF0022250 vs. NCBI nr
Match: KAF5735778.1 (hypothetical protein HS088_TW15G01294 [Tripterygium wilfordii])

HSP 1 Score: 48.1 bits (113), Expect = 2.39e-05
Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 0

Query: 22 AVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFIYLVALLWH 67
          A   AQD A ++P PAMDAG G  +TFS+  I  ++F+  +ALLWH
Sbjct: 23 AAVTAQDSA-ISPSPAMDAGAGSPMTFSSASICFALFVSTLALLWH 67

BLAST of IVF0022250 vs. NCBI nr
Match: KAB2607329.1 (hypothetical protein D8674_007046 [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 47.8 bits (112), Expect = 3.17e-05
Identity = 32/67 (47.76%), Postives = 42/67 (62.69%), Query Frame = 0

Query: 1  MAGFSIHRAMWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFIY 60
          MA  SI +A++L V+ +VL+    RAQDGA  AP PA+DAG G  VT S   +  S+ + 
Sbjct: 1  MAQVSICKAVFLMVIAIVLV--SVRAQDGAP-APSPALDAGAGVPVTISGAFVYSSVLLS 60

Query: 61 LVALLWH 67
          L ALL H
Sbjct: 61 LFALLRH 64

BLAST of IVF0022250 vs. NCBI nr
Match: TQD85036.1 (hypothetical protein C1H46_029427 [Malus baccata])

HSP 1 Score: 45.4 bits (106), Expect = 2.58e-04
Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 0

Query: 1  MAGFSIHRAMWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFIY 60
          MA  SI +A++L V+ +VL+     AQDGA  AP PA+DAG G  VT S   +  S+ + 
Sbjct: 1  MAQVSICKAVFLMVIAIVLV--SVTAQDGAP-APSPALDAGAGVPVTISGAFVYSSVLLS 60

Query: 61 LVALLWH 67
          L ALL H
Sbjct: 61 LFALLRH 64

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3D5P41.9e-27100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LXI49.8e-2494.03Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613500 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAA0059092.12.01e-38100.00hypothetical protein E6C27_scaffold601G00030 [Cucumis melo var. makuwa] >TYK1884... [more]
KGN66478.11.07e-3394.03hypothetical protein Csa_007521 [Cucumis sativus][more]
KAF5735778.12.39e-0550.00hypothetical protein HS088_TW15G01294 [Tripterygium wilfordii][more]
KAB2607329.13.17e-0547.76hypothetical protein D8674_007046 [Pyrus ussuriensis x Pyrus communis][more]
TQD85036.12.58e-0446.27hypothetical protein C1H46_029427 [Malus baccata][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33659PROTEIN, PUTATIVE-RELATED-RELATEDcoord: 1..67
NoneNo IPR availablePANTHERPTHR33659:SF10SUBFAMILY NOT NAMEDcoord: 1..67

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0022250.1IVF0022250.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane