IVF0022208 (gene) Melon (IVF77) v1

Overview
NameIVF0022208
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr07: 8900582 .. 8901156 (-)
RNA-Seq ExpressionIVF0022208
SyntenyIVF0022208
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCGGCTCAGCTCGGCTCGCGGCTTGGGTTGGTAAGTTCACGGCTCGACTTGGCTTGGATCGCAGCGCGACTCGGCTTGGATTGCTGCTCGCTAGACTTGCAGCTCGGCTCGGTCCTCGGCTAGGCTCGGCTCGGCTTGGCACGCGTCTCGCGGCTCAACTCGATTTTCGGCTCGACTCGACTTGGCTCGCGGCTTGCGGCTCGACTCGGTTTTCGACTTGGCTTGGATTCACGGCTCGGGTACGGCTTGGATTGAAAGAGAAGAATGCTCGGGTCGGGTCAGCTTGGTTGGCTCGGGTGTGGGTGCCGCACGAAACGGGTTGAAGGGGGAGAAGAAGACCCGACGACGACGACGGCTACGGAACGATTGGGGACGGCGGAGACTTCCCACGACTCCACTCGGGTCCTTCTAGGTCGTGTCAGACGGCATACGGAGAGAGGATAACAACCCCAGCGACACCGCAAGGGTGTCGACGGCTGTCGCCGGACTTGGCGGATCTGGGGGCCAATGCCAGAAGGGAACCGGAAAAGAAAGGAGTTGCGCACGCCCTAATGACGTTCGACTAAGGTAG

mRNA sequence

ATGACCGGCTCAGCTCGGCTCGCGGCTTGGGTTGGTAAGTTCACGGCTCGACTTGGCTTGGATCGCAGCGCGACTCGGCTTGGATTGCTGCTCGCTAGACTTGCAGCTCGGCTCGGTCCTCGGCTAGGCTCGGCTCGGCTTGGCACGCGTCTCGCGGCTCAACTCGATTTTCGGCTCGACTCGACTTGGCTCGCGGCTTGCGGCTCGACTCGGTTTTCGACTTGGCTTGGATTCACGGCTCGGGTCGTGTCAGACGGCATACGGAGAGAGGATAACAACCCCAGCGACACCGCAAGGGTGTCGACGGCTGTCGCCGGACTTGGCGGATCTGGGGGCCAATGCCAGAAGGGAACCGGAAAAGAAAGGAGTTGCGCACGCCCTAATGACGTTCGACTAAGGTAG

Coding sequence (CDS)

ATGACCGGCTCAGCTCGGCTCGCGGCTTGGGTTGGTAAGTTCACGGCTCGACTTGGCTTGGATCGCAGCGCGACTCGGCTTGGATTGCTGCTCGCTAGACTTGCAGCTCGGCTCGGTCCTCGGCTAGGCTCGGCTCGGCTTGGCACGCGTCTCGCGGCTCAACTCGATTTTCGGCTCGACTCGACTTGGCTCGCGGCTTGCGGCTCGACTCGGTTTTCGACTTGGCTTGGATTCACGGCTCGGGTCGTGTCAGACGGCATACGGAGAGAGGATAACAACCCCAGCGACACCGCAAGGGTGTCGACGGCTGTCGCCGGACTTGGCGGATCTGGGGGCCAATGCCAGAAGGGAACCGGAAAAGAAAGGAGTTGCGCACGCCCTAATGACGTTCGACTAAGGTAG

Protein sequence

MTGSARLAAWVGKFTARLGLDRSATRLGLLLARLAARLGPRLGSARLGTRLAAQLDFRLDSTWLAACGSTRFSTWLGFTARVVSDGIRREDNNPSDTARVSTAVAGLGGSGGQCQKGTGKERSCARPNDVRLR
Homology
[Close]
BLAST of IVF0022208 vs. NCBI nr
Match: KAA0033009.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 52.0 bits (123), Expect = 7.25e-05
Identity = 39/78 (50.00%), Postives = 43/78 (55.13%), Query Frame = 0 

Query: 4   SARLAAWVGKFTARLGLDRSATRLGLLLARLAARLGPRLGSA----RLGTRLAAQLDFRL 63
           SARL AWV +F ARL LD+           LAARLG +LGSA    RLG RL AQL  RL
Sbjct: 119 SARLTAWVDQFAARLDLDQ-----------LAARLGSQLGSAWIAARLGFRLVAQLYLRL 178

Query: 64  DSTWLAACGSTRFSTWLG 77
           DS   +A  S      LG
Sbjct: 179 DSILSSAQSSALLGPQLG 185

[Close]
BLAST of IVF0022208 vs. NCBI nr
Match: TYK03425.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 52.0 bits (123), Expect = 9.56e-05
Identity = 39/78 (50.00%), Postives = 43/78 (55.13%), Query Frame = 0 

Query: 4   SARLAAWVGKFTARLGLDRSATRLGLLLARLAARLGPRLGSA----RLGTRLAAQLDFRL 63
           SARL AWV +F ARL LD+           LAARLG +LGSA    RLG RL AQL  RL
Sbjct: 119 SARLTAWVDQFAARLDLDQ-----------LAARLGSQLGSAWIAARLGFRLVAQLYLRL 178

Query: 64  DSTWLAACGSTRFSTWLG 77
           DS   +A  S      LG
Sbjct: 179 DSILSSAQSSALLGPQLG 185

The following BLAST results are available for this feature:
BLAST of IVF0022208 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0022208 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0022208 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0033009.17.25e-0550.00NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
TYK03425.19.56e-0550.00NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
BLAST of IVF0022208 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..133

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0022208.1IVF0022208.1mRNA