IVF0022157 (gene) Melon (IVF77) v1

Overview
NameIVF0022157
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionATP-dependent DNA helicase RecQ-like
Locationchr04: 4891469 .. 4891687 (-)
RNA-Seq ExpressionIVF0022157
SyntenyIVF0022157
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGGAGTTGTAACCGGCAAGAACACCTCCGGCAAGGGAAAGGATATTGTATTTGATGAAGAGGAGATCCCATCCCCACGCACCTTGGCTGCCCATTTAATGGTAGTTGAAGAGAAAGTGGTGGACCTCAACGACCAAATGGGAAATCTTCAAACCACCGTGGAACGACTTGCTCTTCGGTTTGAAGTCGCATTGACTACCCTTCCCCAAGAGTAA

mRNA sequence

ATGAAGGGAGTTGTAACCGGCAAGAACACCTCCGGCAAGGGAAAGGATATTGTATTTGATGAAGAGGAGATCCCATCCCCACGCACCTTGGCTGCCCATTTAATGGTAGTTGAAGAGAAAGTGGTGGACCTCAACGACCAAATGGGAAATCTTCAAACCACCGTGGAACGACTTGCTCTTCGGTTTGAAGTCGCATTGACTACCCTTCCCCAAGAGTAA

Coding sequence (CDS)

ATGAAGGGAGTTGTAACCGGCAAGAACACCTCCGGCAAGGGAAAGGATATTGTATTTGATGAAGAGGAGATCCCATCCCCACGCACCTTGGCTGCCCATTTAATGGTAGTTGAAGAGAAAGTGGTGGACCTCAACGACCAAATGGGAAATCTTCAAACCACCGTGGAACGACTTGCTCTTCGGTTTGAAGTCGCATTGACTACCCTTCCCCAAGAGTAA

Protein sequence

MKGVVTGKNTSGKGKDIVFDEEEIPSPRTLAAHLMVVEEKVVDLNDQMGNLQTTVERLALRFEVALTTLPQE
Homology
[Close]
BLAST of IVF0022157 vs. ExPASy TrEMBL
Match: A0A5A7ULZ0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold519G00250 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.2e-13
Identity = 45/71 (63.38%), Postives = 54/71 (76.06%), Query Frame = 0 

Query: 1  MKGV-VTGKNTSGKGKDIVFDEEEIPSPRTLAAHLMVVEEKVVDLNDQMGNLQTTVERLA 60
          MKGV VT KNTS KGKD+V  E+EIPSPRT AA LMVVEE  V++ D+MG+L+  +ERLA
Sbjct: 1  MKGVAVTSKNTSDKGKDVVLTEKEIPSPRTSAARLMVVEESTVEIFDRMGSLEAIMERLA 60

Query: 61 LRFEVALTTLP 71
           R E AL  +P
Sbjct: 61 RRLEEALMAIP 71

[Close]
BLAST of IVF0022157 vs. ExPASy TrEMBL
Match: A0A5A7TEL7 (ATP-dependent DNA helicase RecQ-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G00950 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.5e-11
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 9   NTSGKGKDIVFDEEEIPSPRTLAAHLMVVEEKVVDLNDQMGNLQTTVERLALRFEVALTT 68
           NTSGKGKD+  DEEEIPS RT AAH+M  EE +V+LND+M   Q  VE +A   EVAL  
Sbjct: 408 NTSGKGKDVAADEEEIPSLRTSAAHMMAGEENMVELNDRMNEFQIIVEWIACHLEVALNA 467

Query: 69  LPQ 72
           LPQ
Sbjct: 468 LPQ 470

[Close]
BLAST of IVF0022157 vs. ExPASy TrEMBL
Match: A0A5D3DUQ9 (ATP-dependent DNA helicase RecQ-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00220 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.5e-11
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 9   NTSGKGKDIVFDEEEIPSPRTLAAHLMVVEEKVVDLNDQMGNLQTTVERLALRFEVALTT 68
           NTSGKGKD+  DEEEIPS RT AAH+M  EE +V+LND+M   Q  VE +A   EVAL  
Sbjct: 406 NTSGKGKDVAADEEEIPSLRTSAAHMMAGEENMVELNDRMNEFQIIVEWIACHLEVALNA 465

Query: 69  LPQ 72
           LPQ
Sbjct: 466 LPQ 468

[Close]
BLAST of IVF0022157 vs. NCBI nr
Match: KAA0054551.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK20400.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 1.28e-19
Identity = 45/71 (63.38%), Postives = 54/71 (76.06%), Query Frame = 0 

Query: 1  MKGV-VTGKNTSGKGKDIVFDEEEIPSPRTLAAHLMVVEEKVVDLNDQMGNLQTTVERLA 60
          MKGV VT KNTS KGKD+V  E+EIPSPRT AA LMVVEE  V++ D+MG+L+  +ERLA
Sbjct: 1  MKGVAVTSKNTSDKGKDVVLTEKEIPSPRTSAARLMVVEESTVEIFDRMGSLEAIMERLA 60

Query: 61 LRFEVALTTLP 70
           R E AL  +P
Sbjct: 61 RRLEEALMAIP 71

[Close]
BLAST of IVF0022157 vs. NCBI nr
Match: TYK27040.1 (ATP-dependent DNA helicase RecQ-like [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 6.87e-15
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 9   NTSGKGKDIVFDEEEIPSPRTLAAHLMVVEEKVVDLNDQMGNLQTTVERLALRFEVALTT 68
           NTSGKGKD+  DEEEIPS RT AAH+M  EE +V+LND+M   Q  VE +A   EVAL  
Sbjct: 406 NTSGKGKDVAADEEEIPSLRTSAAHMMAGEENMVELNDRMNEFQIIVEWIACHLEVALNA 465

Query: 69  LPQ 71
           LPQ
Sbjct: 466 LPQ 468

[Close]
BLAST of IVF0022157 vs. NCBI nr
Match: KAA0041750.1 (ATP-dependent DNA helicase RecQ-like [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 6.88e-15
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 9   NTSGKGKDIVFDEEEIPSPRTLAAHLMVVEEKVVDLNDQMGNLQTTVERLALRFEVALTT 68
           NTSGKGKD+  DEEEIPS RT AAH+M  EE +V+LND+M   Q  VE +A   EVAL  
Sbjct: 408 NTSGKGKDVAADEEEIPSLRTSAAHMMAGEENMVELNDRMNEFQIIVEWIACHLEVALNA 467

Query: 69  LPQ 71
           LPQ
Sbjct: 468 LPQ 470

The following BLAST results are available for this feature:
BLAST of IVF0022157 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0022157 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7ULZ02.2e-1363.38Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold51... [more]
A0A5A7TEL73.5e-1161.90ATP-dependent DNA helicase RecQ-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3DUQ93.5e-1161.90ATP-dependent DNA helicase RecQ-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
BLAST of IVF0022157 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0054551.11.28e-1963.38reverse transcriptase [Cucumis melo var. makuwa] >TYK20400.1 reverse transcripta... [more]
TYK27040.16.87e-1561.90ATP-dependent DNA helicase RecQ-like [Cucumis melo var. makuwa][more]
KAA0041750.16.88e-1561.90ATP-dependent DNA helicase RecQ-like [Cucumis melo var. makuwa][more]
BLAST of IVF0022157 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0022157.1IVF0022157.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
molecular_function GO:0140640 catalytic activity, acting on a nucleic acid
molecular_function GO:0000166 nucleotide binding