IVF0022131 (gene) Melon (IVF77) v1

Overview


Name	IVF0022131
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	tig00000135: 648353 .. 648631 (+)
RNA-Seq Expression	IVF0022131
Synteny	IVF0022131

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAATGGGAATGGGAATGAGAATGGGGAATGGCAATGAGGGAGGGGTGAAAGAAAGGTGTGGCGTTGACGGAAATGGTGGTGGTCCGGCGAGTGGGGTGGGAATGGAAGAGAAGGTTTTGGGGAGAAGAAGAAGAAAAGAGAATAGAACAGAGAATAGAGAATTGTTCCGGCGGGTAGGAAGCGGGTGGGCGTTGGGGATTTGGTCGAATAAAGTTGCTACATCTAAACCGAAATGTAACGCCTCCAACAATATTTATCCCAAACTCCTACTCTAA

mRNA sequence

ATGGGAATGGGAATGGGAATGAGAATGGGGAATGGCAATGAGGGAGGGGTGAAAGAAAGGTGTGGCGTTGACGGAAATGGTGGTGGTCCGGCGAGTGGGGTGGGAATGGAAGAGAAGGTTTTGGGGAGAAGAAGAAGAAAAGAGAATAGAACAGAGAATAGAGAATTGTTCCGGCGGGTAGGAAGCGGGTGGGCGTTGGGGATTTGGTCGAATAAAGTTGCTACATCTAAACCGAAATGTAACGCCTCCAACAATATTTATCCCAAACTCCTACTCTAA

Coding sequence (CDS)

ATGGGAATGGGAATGGGAATGAGAATGGGGAATGGCAATGAGGGAGGGGTGAAAGAAAGGTGTGGCGTTGACGGAAATGGTGGTGGTCCGGCGAGTGGGGTGGGAATGGAAGAGAAGGTTTTGGGGAGAAGAAGAAGAAAAGAGAATAGAACAGAGAATAGAGAATTGTTCCGGCGGGTAGGAAGCGGGTGGGCGTTGGGGATTTGGTCGAATAAAGTTGCTACATCTAAACCGAAATGTAACGCCTCCAACAATATTTATCCCAAACTCCTACTCTAA

Protein sequence

MGMGMGMRMGNGNEGGVKERCGVDGNGGGPASGVGMEEKVLGRRRRKENRTENRELFRRVGSGWALGIWSNKVATSKPKCNASNNIYPKLLL

Homology

[Close]

BLAST of IVF0022131 vs. ExPASy TrEMBL
Match: A0A0A0L6X4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133940 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.2e-07
Identity = 41/56 (73.21%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 1  MGMGMGMRMGNGNEGGVKERC-GVDGNGGGPASGVGMEEKVLGRR--RRKENRTEN 54
          MGMG GMRM      GVKERC GVDGNGGGPASGVGM EKVLGRR  +R+E R EN
Sbjct: 3  MGMGTGMRM----REGVKERCGGVDGNGGGPASGVGMVEKVLGRRKEKRRELRIEN 54

[Close]

BLAST of IVF0022131 vs. NCBI nr
Match: KGN56794.1 (hypothetical protein Csa_010918 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 4.06e-11
Identity = 41/56 (73.21%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 1  MGMGMGMRMGNGNEGGVKERCG-VDGNGGGPASGVGMEEKVLGRRR--RKENRTEN 53
          MGMG GMRM  G    VKERCG VDGNGGGPASGVGM EKVLGRR+  R+E R EN
Sbjct: 3  MGMGTGMRMREG----VKERCGGVDGNGGGPASGVGMVEKVLGRRKEKRRELRIEN 54

The following BLAST results are available for this feature:

BLAST of IVF0022131 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0022131 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6X4	5.2e-07	73.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133940 PE=4 SV=1	[more]

BLAST of IVF0022131 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56794.1	4.06e-11	73.21	hypothetical protein Csa_010918 [Cucumis sativus]	[more]

BLAST of IVF0022131 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0022131.1	IVF0022131.1	mRNA