IVF0022035 (gene) Melon (IVF77) v1

Overview


Name	IVF0022035
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag-pro-like protein
Location	chr02: 15672061 .. 15672551 (-)
RNA-Seq Expression	IVF0022035
Synteny	IVF0022035

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAGCAAACCAATGATCAGGTTCAAGCAGTTCGTCAAGACGTTGAAGGTCTGAAGGATCAATTGGCAAAAATCCTAGAATTGCTCACCACCGGAAGAGGAAAGAGTGTTGCGGGGACTTCATCACAAGTGGAAGTGGATCTGAATCAGGTACTGGAGGACATGCCTGCATATCCTCCGGGTTTCACTCCTCAAAGGTCATCTAGTCCACACATGGGGGATAGGACATATCCTACATCATTTCCCGCGCCAAATCCTAACACAACCACCCAACAAGCAGCTCATGCGAACAATCCTATATCTACTCCAATTATGGAAGGTGGTAAGAAAATTTCAGAAGAGCAGGGTAGTAGAAGAAGACTGGAATTTCTAGAAGAAAGACTGCGCGTCATTGAAGGTGCAGACATGTACGGGAGCATCGACGCAACACAACTATGTTTGATATCAGATGTGGTGATCCCTCCCAAATTCAAGACTCTAGATTTTGA

mRNA sequence

ATGGATGAGCAAACCAATGATCAGGTTCAAGCAGTTCGTCAAGACGTTGAAGGTCTGAAGGATCAATTGGCAAAAATCCTAGAATTGCTCACCACCGGAAGAGGAAAGAGTGTTGCGGGGACTTCATCACAAGTGGAAGTGGATCTGAATCAGGTACTGGAGGACATGCCTGCATATCCTCCGGGTTTCACTCCTCAAAGGTCATCTAGTCCACACATGGGGGATAGGACATATCCTACATCATTTCCCGCGCCAAATCCTAACACAACCACCCAACAAGCAGCTCATGCGAACAATCCTATATCTACTCCAATTATGGAAGGTGGTAAGAAAATTTCAGAAGAGCAGGGTAGTAGAAGAAGACTGGAATTTCTAGAAGAAAGACTGCGCGTCATTGAAGGTGCAGACATATGTGGTGATCCCTCCCAAATTCAAGACTCTAGATTTTGA

Coding sequence (CDS)

ATGGATGAGCAAACCAATGATCAGGTTCAAGCAGTTCGTCAAGACGTTGAAGGTCTGAAGGATCAATTGGCAAAAATCCTAGAATTGCTCACCACCGGAAGAGGAAAGAGTGTTGCGGGGACTTCATCACAAGTGGAAGTGGATCTGAATCAGGTACTGGAGGACATGCCTGCATATCCTCCGGGTTTCACTCCTCAAAGGTCATCTAGTCCACACATGGGGGATAGGACATATCCTACATCATTTCCCGCGCCAAATCCTAACACAACCACCCAACAAGCAGCTCATGCGAACAATCCTATATCTACTCCAATTATGGAAGGTGGTAAGAAAATTTCAGAAGAGCAGGGTAGTAGAAGAAGACTGGAATTTCTAGAAGAAAGACTGCGCGTCATTGAAGGTGCAGACATATGTGGTGATCCCTCCCAAATTCAAGACTCTAGATTTTGA

Protein sequence

MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDMPAYPPGFTPQRSSSPHMGDRTYPTSFPAPNPNTTTQQAAHANNPISTPIMEGGKKISEEQGSRRRLEFLEERLRVIEGADICGDPSQIQDSRF

Homology

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BLAST of IVF0022035 vs. ExPASy TrEMBL
Match: A0A5A7TXF2 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001530 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 7.9e-66
Identity = 134/139 (96.40%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDMPAYP 60
           MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDMPAYP
Sbjct: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDMPAYP 60

Query: 61  PGFTPQRSSSPHMGDRTYPTSFPAPNPNTTTQQAAHANNPISTPIMEGGKKISEEQGSRR 120
           PGFTPQRSSSP MGD TYPTSFPAPNPNTTTQQAAHANNPISTPIMEG KKISEEQGSRR
Sbjct: 61  PGFTPQRSSSPRMGDITYPTSFPAPNPNTTTQQAAHANNPISTPIMEGSKKISEEQGSRR 120

Query: 121 RLEFLEERLRVIEGADICG 140
           RLEFLEERLRVIEGAD+ G
Sbjct: 121 RLEFLEERLRVIEGADMYG 139

[Close]

BLAST of IVF0022035 vs. ExPASy TrEMBL
Match: A0A5A7VAU5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00060 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.3e-65
Identity = 133/139 (95.68%), Postives = 134/139 (96.40%), Query Frame = 0


Query: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDMPAYP 60
           MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSV GTSSQVEVDLNQVLEDMP YP
Sbjct: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVVGTSSQVEVDLNQVLEDMPTYP 60

Query: 61  PGFTPQRSSSPHMGDRTYPTSFPAPNPNTTTQQAAHANNPISTPIMEGGKKISEEQGSRR 120
           PGFTPQRSSSP MGDRTYPTSFPAPNPNTTTQQAAHANNPIST IMEGGKKISEEQGSRR
Sbjct: 61  PGFTPQRSSSPRMGDRTYPTSFPAPNPNTTTQQAAHANNPISTLIMEGGKKISEEQGSRR 120

Query: 121 RLEFLEERLRVIEGADICG 140
           RLEFLEERLRVIEGAD+ G
Sbjct: 121 RLEFLEERLRVIEGADMYG 139

[Close]

BLAST of IVF0022035 vs. ExPASy TrEMBL
Match: A0A5A7V681 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold455G00760 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.3e-65
Identity = 133/139 (95.68%), Postives = 134/139 (96.40%), Query Frame = 0


Query: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDMPAYP 60
           MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDMPAYP
Sbjct: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDMPAYP 60

Query: 61  PGFTPQRSSSPHMGDRTYPTSFPAPNPNTTTQQAAHANNPISTPIMEGGKKISEEQGSRR 120
           PGFTPQRSSSP MGDRTYPTSFP PNPNTTTQQ AHANNPIST IMEGGKKISEEQGSRR
Sbjct: 61  PGFTPQRSSSPRMGDRTYPTSFPTPNPNTTTQQVAHANNPISTLIMEGGKKISEEQGSRR 120

Query: 121 RLEFLEERLRVIEGADICG 140
           RLEFLEERLRVIEGAD+ G
Sbjct: 121 RLEFLEERLRVIEGADMYG 139

[Close]

BLAST of IVF0022035 vs. ExPASy TrEMBL
Match: A0A5A7SUT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00100 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.6e-56
Identity = 118/126 (93.65%), Postives = 119/126 (94.44%), Query Frame = 0


Query: 8   QVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDMPAYPPGFTPQR 67
           Q   +RQDVEGLKDQLAKILELLTTGRGKSV GTSSQVEVDLNQVLEDMPAYPPGFTPQR
Sbjct: 597 QCLGLRQDVEGLKDQLAKILELLTTGRGKSVVGTSSQVEVDLNQVLEDMPAYPPGFTPQR 656

Query: 68  SSSPHMGDRTYPTSFPAPNPNTTTQQAAHANNPISTPIMEGGKKISEEQGSRRRLEFLEE 127
           SSSP MGDRTYPTSFPAPNPNTTTQQ AHANNPIST IMEGGKKISEEQGSRRRLEFLEE
Sbjct: 657 SSSPRMGDRTYPTSFPAPNPNTTTQQEAHANNPISTLIMEGGKKISEEQGSRRRLEFLEE 716

Query: 128 RLRVIE 134
           RLRVIE
Sbjct: 717 RLRVIE 722

[Close]

BLAST of IVF0022035 vs. ExPASy TrEMBL
Match: A0A5A7V1Y8 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00010 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 5.7e-56
Identity = 119/137 (86.86%), Postives = 125/137 (91.24%), Query Frame = 0


Query: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDMPAYP 60
           MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLED+ AYP
Sbjct: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDILAYP 60

Query: 61  PGFTPQRSSSPHMGDRTYPTSFPAPNPNTTTQQAAHANNPISTPIMEGGKKISEEQGSRR 120
           P FTPQR SSP M DRTYPTSFPAPNPNTTTQQAAH ++ ISTPI + GKKISEEQGSR+
Sbjct: 61  PSFTPQRPSSPRMVDRTYPTSFPAPNPNTTTQQAAHVSDLISTPITKSGKKISEEQGSRK 120

Query: 121 RLEFLEERLRVIEGADI 138
           RLEFLEERL  IEG D+
Sbjct: 121 RLEFLEERLCTIEGIDM 137

[Close]

BLAST of IVF0022035 vs. NCBI nr
Match: KAA0046607.1 (Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 259 bits (661), Expect = 3.94e-85
Identity = 135/145 (93.10%), Postives = 136/145 (93.79%), Query Frame = 0


Query: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDMPAYP 60
           MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDMPAYP
Sbjct: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDMPAYP 60

Query: 61  PGFTPQRSSSPHMGDRTYPTSFPAPNPNTTTQQAAHANNPISTPIMEGGKKISEEQGSRR 120
           PGFTPQRSSSP MGD TYPTSFPAPNPNTTTQQAAHANNPISTPIMEG KKISEEQGSRR
Sbjct: 61  PGFTPQRSSSPRMGDITYPTSFPAPNPNTTTQQAAHANNPISTPIMEGSKKISEEQGSRR 120

Query: 121 RLEFLEERLRVIEGADICGDPSQIQ 145
           RLEFLEERLRVIEGAD+ G     Q
Sbjct: 121 RLEFLEERLRVIEGADMYGSIDATQ 145

[Close]

BLAST of IVF0022035 vs. NCBI nr
Match: KAA0061241.1 (uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 257 bits (657), Expect = 1.22e-76
Identity = 134/145 (92.41%), Postives = 135/145 (93.10%), Query Frame = 0


Query: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDMPAYP 60
           MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDMPAYP
Sbjct: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDMPAYP 60

Query: 61  PGFTPQRSSSPHMGDRTYPTSFPAPNPNTTTQQAAHANNPISTPIMEGGKKISEEQGSRR 120
           PGFTPQRSSSP MGDRTYPTSFP PNPNTTTQQ AHANNPIST IMEGGKKISEEQGSRR
Sbjct: 61  PGFTPQRSSSPRMGDRTYPTSFPTPNPNTTTQQVAHANNPISTLIMEGGKKISEEQGSRR 120

Query: 121 RLEFLEERLRVIEGADICGDPSQIQ 145
           RLEFLEERLRVIEGAD+ G     Q
Sbjct: 121 RLEFLEERLRVIEGADMYGSIDATQ 145

[Close]

BLAST of IVF0022035 vs. NCBI nr
Match: KAA0065293.1 (uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 257 bits (657), Expect = 3.42e-76
Identity = 134/145 (92.41%), Postives = 135/145 (93.10%), Query Frame = 0


Query: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDMPAYP 60
           MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSV GTSSQVEVDLNQVLEDMP YP
Sbjct: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVVGTSSQVEVDLNQVLEDMPTYP 60

Query: 61  PGFTPQRSSSPHMGDRTYPTSFPAPNPNTTTQQAAHANNPISTPIMEGGKKISEEQGSRR 120
           PGFTPQRSSSP MGDRTYPTSFPAPNPNTTTQQAAHANNPIST IMEGGKKISEEQGSRR
Sbjct: 61  PGFTPQRSSSPRMGDRTYPTSFPAPNPNTTTQQAAHANNPISTLIMEGGKKISEEQGSRR 120

Query: 121 RLEFLEERLRVIEGADICGDPSQIQ 145
           RLEFLEERLRVIEGAD+ G     Q
Sbjct: 121 RLEFLEERLRVIEGADMYGSIDATQ 145

[Close]

BLAST of IVF0022035 vs. NCBI nr
Match: XP_008452348.1 (PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo] >KAA0060506.1 Gag-pro-like protein [Cucumis melo var. makuwa] >TYK00746.1 Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 226 bits (575), Expect = 1.65e-70
Identity = 119/137 (86.86%), Postives = 125/137 (91.24%), Query Frame = 0


Query: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDMPAYP 60
           MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLED+ AYP
Sbjct: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDILAYP 60

Query: 61  PGFTPQRSSSPHMGDRTYPTSFPAPNPNTTTQQAAHANNPISTPIMEGGKKISEEQGSRR 120
           P FTPQR SSP M DRTYPTSFPAPNPNTTTQQAAH ++ ISTPI + GKKISEEQGSR+
Sbjct: 61  PSFTPQRPSSPRMVDRTYPTSFPAPNPNTTTQQAAHVSDLISTPITKSGKKISEEQGSRK 120

Query: 121 RLEFLEERLRVIEGADI 137
           RLEFLEERL  IEG D+
Sbjct: 121 RLEFLEERLCTIEGIDM 137

[Close]

BLAST of IVF0022035 vs. NCBI nr
Match: KAA0032021.1 (Gag-pro-like protein [Cucumis melo var. makuwa] >TYK16842.1 Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 218 bits (554), Expect = 1.10e-68
Identity = 117/145 (80.69%), Postives = 124/145 (85.52%), Query Frame = 0


Query: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDMPAYP 60
           MDEQ+NDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAG SSQVEVDLNQVLEDM  YP
Sbjct: 1   MDEQSNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGISSQVEVDLNQVLEDMTTYP 60

Query: 61  PGFTPQRSSSPHMGDRTYPTSFPAPNPNTTTQQAAHANNPISTPIMEGGKKISEEQGSRR 120
           PGFTPQ+SSSP + DRTYPT     NPNTTTQQA H ++PIST I EGGKKISEEQGSRR
Sbjct: 61  PGFTPQQSSSPRIVDRTYPTQ----NPNTTTQQAVHVSDPISTLITEGGKKISEEQGSRR 120

Query: 121 RLEFLEERLRVIEGADICGDPSQIQ 145
           R+EFLEERLR IEGAD+ G     Q
Sbjct: 121 RMEFLEERLRAIEGADMYGSIDATQ 141

The following BLAST results are available for this feature:

BLAST of IVF0022035 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0022035 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TXF2	7.9e-66	96.40	Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114...	[more]
A0A5A7VAU5	2.3e-65	95.68	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7V681	2.3e-65	95.68	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7SUT0	2.6e-56	93.65	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84...	[more]
A0A5A7V1Y8	5.7e-56	86.86	Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420...	[more]

BLAST of IVF0022035 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046607.1	3.94e-85	93.10	Gag-pro-like protein [Cucumis melo var. makuwa]	[more]
KAA0061241.1	1.22e-76	92.41	uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa]	[more]
KAA0065293.1	3.42e-76	92.41	uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa]	[more]
XP_008452348.1	1.65e-70	86.86	PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo] >KAA0060506.1 Gag...	[more]
KAA0032021.1	1.10e-68	80.69	Gag-pro-like protein [Cucumis melo var. makuwa] >TYK16842.1 Gag-pro-like protein...	[more]

BLAST of IVF0022035 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 2..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0022035.2	IVF0022035.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003964	RNA-directed DNA polymerase activity