IVF0022026 (gene) Melon (IVF77) v1

Overview
NameIVF0022026
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr05: 17601248 .. 17601451 (+)
RNA-Seq ExpressionIVF0022026
SyntenyIVF0022026
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTGTTGTCTGTTACATAATCTTATCAAAAGAGAAATGACTAACAATGAAATAATCGATGATTTGGATGAGGGTGATTCAACATACGCAACAACTGGAGGTGACGAGATTAATTACATTGAGGCTTCAAACGAATGGAGTGAATTGAGGGATCAATTGGCTCATACGATGTTCAGTGATTGGGAGTTACGTGACCAATAG

mRNA sequence

ATGGCGTGTTGTCTGTTACATAATCTTATCAAAAGAGAAATGACTAACAATGAAATAATCGATGATTTGGATGAGGGTGATTCAACATACGCAACAACTGGAGGTGACGAGATTAATTACATTGAGGCTTCAAACGAATGGAGTGAATTGAGGGATCAATTGGCTCATACGATGTTCAGTGATTGGGAGTTACGTGACCAATAG

Coding sequence (CDS)

ATGGCGTGTTGTCTGTTACATAATCTTATCAAAAGAGAAATGACTAACAATGAAATAATCGATGATTTGGATGAGGGTGATTCAACATACGCAACAACTGGAGGTGACGAGATTAATTACATTGAGGCTTCAAACGAATGGAGTGAATTGAGGGATCAATTGGCTCATACGATGTTCAGTGATTGGGAGTTACGTGACCAATAG

Protein sequence

MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFSDWELRDQ
Homology
[Close]
BLAST of IVF0022026 vs. ExPASy TrEMBL
Match: A0A5D3CDG6 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002070 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 8.3e-31
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1   MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 60
           MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS
Sbjct: 182 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 241

Query: 61  DWELRDQ 68
           DWELRDQ
Sbjct: 242 DWELRDQ 248

[Close]
BLAST of IVF0022026 vs. ExPASy TrEMBL
Match: A0A5A7U0J9 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G002560 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 8.3e-31
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1   MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 60
           MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS
Sbjct: 182 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 241

Query: 61  DWELRDQ 68
           DWELRDQ
Sbjct: 242 DWELRDQ 248

[Close]
BLAST of IVF0022026 vs. ExPASy TrEMBL
Match: A0A1S3B4J8 (uncharacterized protein LOC103485952 OS=Cucumis melo OX=3656 GN=LOC103485952 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 8.3e-31
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1   MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 60
           MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS
Sbjct: 182 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 241

Query: 61  DWELRDQ 68
           DWELRDQ
Sbjct: 242 DWELRDQ 248

[Close]
BLAST of IVF0022026 vs. ExPASy TrEMBL
Match: A0A5A7TJS2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00710 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.7e-28
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 0 

Query: 1   MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 60
           MACCLLHNLI REMTN+EIIDDLDEGDSTYATTGGDEINYIE SNEWSELRDQLA+TMFS
Sbjct: 105 MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFS 164

Query: 61  DWELRDQ 68
           DWELRDQ
Sbjct: 165 DWELRDQ 171

[Close]
BLAST of IVF0022026 vs. ExPASy TrEMBL
Match: A0A5D3D8J6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold307G00030 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.7e-28
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 0 

Query: 1   MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 60
           MACCLLHNLI REMTN+EIIDDLDEGDSTYATTGGDEINYIE SNEWSELRDQLA+TMFS
Sbjct: 105 MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFS 164

Query: 61  DWELRDQ 68
           DWELRDQ
Sbjct: 165 DWELRDQ 171

[Close]
BLAST of IVF0022026 vs. NCBI nr
Match: XP_008441953.1 (PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo] >KAA0047737.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 143 bits (361), Expect = 7.39e-41
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1   MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 60
           MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS
Sbjct: 182 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 241

Query: 61  DWELRDQ 67
           DWELRDQ
Sbjct: 242 DWELRDQ 248

[Close]
BLAST of IVF0022026 vs. NCBI nr
Match: TYK08389.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 143 bits (361), Expect = 7.39e-41
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1   MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 60
           MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS
Sbjct: 182 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 241

Query: 61  DWELRDQ 67
           DWELRDQ
Sbjct: 242 DWELRDQ 248

[Close]
BLAST of IVF0022026 vs. NCBI nr
Match: KAA0043564.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 135 bits (341), Expect = 9.38e-37
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 0 

Query: 1   MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 60
           MACCLLHNLI REMTN+EIIDDLDEGDSTYATTGGDEINYIE SNEWSELRDQLA+TMFS
Sbjct: 105 MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFS 164

Query: 61  DWELRDQ 67
           DWELRDQ
Sbjct: 165 DWELRDQ 171

[Close]
BLAST of IVF0022026 vs. NCBI nr
Match: KAA0063753.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK05505.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 132 bits (331), Expect = 2.34e-36
Identity = 62/67 (92.54%), Postives = 63/67 (94.03%), Query Frame = 0 

Query: 1   MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 60
           MACCLLHNLI REMTN+EIIDDLDE DSTYATTGGDEINYIEASNEWSE RDQLAHTMFS
Sbjct: 180 MACCLLHNLINREMTNSEIIDDLDEADSTYATTGGDEINYIEASNEWSEWRDQLAHTMFS 239

Query: 61  DWELRDQ 67
           DWEL DQ
Sbjct: 240 DWELCDQ 246

[Close]
BLAST of IVF0022026 vs. NCBI nr
Match: TYK19779.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 135 bits (341), Expect = 1.42e-35
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 0 

Query: 1   MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 60
           MACCLLHNLI REMTN+EIIDDLDEGDSTYATTGGDEINYIE SNEWSELRDQLA+TMFS
Sbjct: 105 MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFS 164

Query: 61  DWELRDQ 67
           DWELRDQ
Sbjct: 165 DWELRDQ 171

The following BLAST results are available for this feature:
BLAST of IVF0022026 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0022026 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CDG68.3e-31100.00Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7U0J98.3e-31100.00Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
A0A1S3B4J88.3e-31100.00uncharacterized protein LOC103485952 OS=Cucumis melo OX=3656 GN=LOC103485952 PE=... [more]
A0A5A7TJS21.7e-2894.03Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3D8J61.7e-2894.03Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of IVF0022026 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008441953.17.39e-41100.00PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo] >KAA0047737.1 put... [more]
TYK08389.17.39e-41100.00putative nuclease HARBI1 [Cucumis melo var. makuwa][more]
KAA0043564.19.38e-3794.03retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0063753.12.34e-3692.54putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK05505.1 putative nucleas... [more]
TYK19779.11.42e-3594.03retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of IVF0022026 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0022026.1IVF0022026.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding