IVF0021981 (gene) Melon (IVF77) v1

Overview


Name	IVF0021981
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr09: 6436385 .. 6436738 (+)
RNA-Seq Expression	IVF0021981
Synteny	IVF0021981

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCGACAAATTCAAAAACCACTAAGTATTGGTAGACAACCATTGAAGATGAGGCATTAGTTAAGTGCTTACTACAACTAGTGAAGGAAGGTGGTTGGAGGGCTGATAATGGAACATTCAAACCGGAATATTTGGTACAAGTACAAAAACTAATGAAAGAAAAAATTCATGGAAGCAACATACAAGTGACTCCAAATCTAGAGTCGAGAGTAAAAATTTTAAAGAAGCAGTACACTGTCATAGCAGAGATGATAGGGCCAGCTTGTAGTGGGTTTGGCTGGAATGAGGAACGAAAGTGCATTGAGGCAGAGAAATCTGTGTTCTATGACTGGGTTAAGGTAAGAAGATGA

mRNA sequence

ATGGAATCGACAAATTCAAAAACCACTAAGTATTGGGCTGATAATGGAACATTCAAACCGGAATATTTGGTACAAGTACAAAAACTAATGAAAGAAAAAATTCATGGAAGCAACATACAAGTGACTCCAAATCTAGAGTCGAGAGTAAAAATTTTAAAGAAGCAGTACACTGTCATAGCAGAGATGATAGGGCCAGCTTGTAGTGGGTTTGGCTGGAATGAGGAACGAAAGTGCATTGAGGCAGAGAAATCTGTGTTCTATGACTGGGTTAAGGTAAGAAGATGA

Coding sequence (CDS)

ATGGAATCGACAAATTCAAAAACCACTAAGTATTGGGCTGATAATGGAACATTCAAACCGGAATATTTGGTACAAGTACAAAAACTAATGAAAGAAAAAATTCATGGAAGCAACATACAAGTGACTCCAAATCTAGAGTCGAGAGTAAAAATTTTAAAGAAGCAGTACACTGTCATAGCAGAGATGATAGGGCCAGCTTGTAGTGGGTTTGGCTGGAATGAGGAACGAAAGTGCATTGAGGCAGAGAAATCTGTGTTCTATGACTGGGTTAAGGTAAGAAGATGA

Protein sequence

MESTNSKTTKYWADNGTFKPEYLVQVQKLMKEKIHGSNIQVTPNLESRVKILKKQYTVIAEMIGPACSGFGWNEERKCIEAEKSVFYDWVKVRR

Homology

[Close]

BLAST of IVF0021981 vs. ExPASy TrEMBL
Match: A0A5A7U7F7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001200 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.3e-33
Identity = 81/116 (69.83%), Postives = 84/116 (72.41%), Query Frame = 0


Query: 1   MESTNSKTTKY---------------------W-ADNGTFKPEYLVQVQKLMKEKIHGSN 60
           M STNSK TK+                     W ADNGTFK  YLVQVQKLMKEKI GSN
Sbjct: 1   MASTNSKATKHRWTTIDEVLVECLLQLVEEGGWRADNGTFKLGYLVQVQKLMKEKILGSN 60

Query: 61  IQVTPNLESRVKILKKQYTVIAEMIGPACSGFGWNEERKCIEAEKSVFYDWVKVRR 95
           IQVTPNL+SRVKILKKQY  IAEM+GPACSGFGWNEERKCIEAEKSVF DWVK  R
Sbjct: 61  IQVTPNLKSRVKILKKQYIAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVKTAR 116

[Close]

BLAST of IVF0021981 vs. ExPASy TrEMBL
Match: A0A5A7TF70 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G001930 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.1e-31
Identity = 71/81 (87.65%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 14  DNGTFKPEYLVQVQKLMKEKIHGSNIQVTPNLESRVKILKKQYTVIAEMIGPACSGFGWN 73
           DNGTFK  YLVQVQKLMKEKI  SNIQVTPNLESRVKILKKQYTVIA+M+GPAC+ FGWN
Sbjct: 253 DNGTFKSGYLVQVQKLMKEKIPESNIQVTPNLESRVKILKKQYTVIAKMMGPACNEFGWN 312

Query: 74  EERKCIEAEKSVFYDWVKVRR 95
           EERKCIEAEKSVF DWVKV R
Sbjct: 313 EERKCIEAEKSVFDDWVKVLR 333

[Close]

BLAST of IVF0021981 vs. ExPASy TrEMBL
Match: A0A0A0KNB4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G420360 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.1e-31
Identity = 77/104 (74.04%), Postives = 82/104 (78.85%), Query Frame = 0


Query: 1   MESTNSKTTKY---------W-ADNGTFKPEYLVQVQKLMKEKIHGSNIQVTPNLESRVK 60
           M STNSK TK+         W A NGTFKP YLVQVQKLMKEKI GSNIQVTPNLE RVK
Sbjct: 1   MASTNSKATKHRWTTIEEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVK 60

Query: 61  ILKKQYTVIAEMIGPACSGFGWNEERKCIEAEKSVFYDWVKVRR 95
           ILKKQYT I EM+GP+CS FGWNE+RKCIEAEK VF D VKVR+
Sbjct: 61  ILKKQYTAIVEMMGPSCSRFGWNEKRKCIEAEKFVFDDLVKVRQ 104

[Close]

BLAST of IVF0021981 vs. ExPASy TrEMBL
Match: A0A5A7SW62 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00210 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 6.8e-31
Identity = 75/114 (65.79%), Postives = 78/114 (68.42%), Query Frame = 0


Query: 1   MESTNSKTTKYW-----------------------ADNGTFKPEYLVQVQKLMKEKIHGS 60
           M S NSK TK+W                        DNGTFKP YLVQVQKLMKEKI  S
Sbjct: 86  MASINSKVTKHWWTTIEDEALVECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILES 145

Query: 61  NIQVTPNLESRVKILKKQYTVIAEMIGPACSGFGWNEERKCIEAEKSVFYDWVK 92
           NIQVTPNLES VKILKKQYT IAEM+GP CSGF WN+ERKCIEAEKSV  DWVK
Sbjct: 146 NIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVK 199

[Close]

BLAST of IVF0021981 vs. ExPASy TrEMBL
Match: A0A5D3DTL0 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00340 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 6.8e-31
Identity = 75/114 (65.79%), Postives = 78/114 (68.42%), Query Frame = 0


Query: 1   MESTNSKTTKYW-----------------------ADNGTFKPEYLVQVQKLMKEKIHGS 60
           M S NSK TK+W                        DNGTFKP YLVQVQKLMKEKI  S
Sbjct: 86  MASINSKVTKHWWTTIEDEALVECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILES 145

Query: 61  NIQVTPNLESRVKILKKQYTVIAEMIGPACSGFGWNEERKCIEAEKSVFYDWVK 92
           NIQVTPNLES VKILKKQYT IAEM+GP CSGF WN+ERKCIEAEKSV  DWVK
Sbjct: 146 NIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVK 199

[Close]

BLAST of IVF0021981 vs. NCBI nr
Match: KGN51053.1 (hypothetical protein Csa_009100 [Cucumis sativus])

HSP 1 Score: 145 bits (365), Expect = 8.23e-43
Identity = 77/104 (74.04%), Postives = 82/104 (78.85%), Query Frame = 0


Query: 1   MESTNSKTTKY---------W-ADNGTFKPEYLVQVQKLMKEKIHGSNIQVTPNLESRVK 60
           M STNSK TK+         W A NGTFKP YLVQVQKLMKEKI GSNIQVTPNLE RVK
Sbjct: 1   MASTNSKATKHRWTTIEEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVK 60

Query: 61  ILKKQYTVIAEMIGPACSGFGWNEERKCIEAEKSVFYDWVKVRR 94
           ILKKQYT I EM+GP+CS FGWNE+RKCIEAEK VF D VKVR+
Sbjct: 61  ILKKQYTAIVEMMGPSCSRFGWNEKRKCIEAEKFVFDDLVKVRQ 104

[Close]

BLAST of IVF0021981 vs. NCBI nr
Match: KAA0050106.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 147 bits (370), Expect = 1.41e-41
Identity = 72/82 (87.80%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 13  ADNGTFKPEYLVQVQKLMKEKIHGSNIQVTPNLESRVKILKKQYTVIAEMIGPACSGFGW 72
           ADNGTFK  YLVQVQKLMKEKI GSNIQVTPNL+SRVKILKKQY  IAEM+GPACSGFGW
Sbjct: 35  ADNGTFKLGYLVQVQKLMKEKILGSNIQVTPNLKSRVKILKKQYIAIAEMMGPACSGFGW 94

Query: 73  NEERKCIEAEKSVFYDWVKVRR 94
           NEERKCIEAEKSVF DWVK  R
Sbjct: 95  NEERKCIEAEKSVFDDWVKTAR 116

[Close]

BLAST of IVF0021981 vs. NCBI nr
Match: KAA0041970.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK17906.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (363), Expect = 9.14e-40
Identity = 71/81 (87.65%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 14  DNGTFKPEYLVQVQKLMKEKIHGSNIQVTPNLESRVKILKKQYTVIAEMIGPACSGFGWN 73
           DNGTFK  YLVQVQKLMKEKI  SNIQVTPNLESRVKILKKQYTVIA+M+GPAC+ FGWN
Sbjct: 253 DNGTFKSGYLVQVQKLMKEKIPESNIQVTPNLESRVKILKKQYTVIAKMMGPACNEFGWN 312

Query: 74  EERKCIEAEKSVFYDWVKVRR 94
           EERKCIEAEKSVF DWVKV R
Sbjct: 313 EERKCIEAEKSVFDDWVKVLR 333

[Close]

BLAST of IVF0021981 vs. NCBI nr
Match: XP_031741735.1 (uncharacterized protein At2g29880-like [Cucumis sativus])

HSP 1 Score: 141 bits (355), Expect = 1.16e-39
Identity = 75/101 (74.26%), Postives = 79/101 (78.22%), Query Frame = 0


Query: 1   MESTNSKTTKY---------W-ADNGTFKPEYLVQVQKLMKEKIHGSNIQVTPNLESRVK 60
           M STNSK TK+         W A NGTFKP YLVQVQKLMKEKI GSNIQVTPNLE RVK
Sbjct: 33  MASTNSKATKHRWTTIEEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVK 92

Query: 61  ILKKQYTVIAEMIGPACSGFGWNEERKCIEAEKSVFYDWVK 91
           ILKKQYT I EM+GP+CS FGWNE+RKCIEAEK VF D VK
Sbjct: 93  ILKKQYTAIVEMMGPSCSRFGWNEKRKCIEAEKFVFDDLVK 133

[Close]

BLAST of IVF0021981 vs. NCBI nr
Match: TYJ96933.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 136 bits (342), Expect = 1.25e-37
Identity = 67/79 (84.81%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 13  ADNGTFKPEYLVQVQKLMKEKIHGSNIQVTPNLESRVKILKKQYTVIAEMIGPACSGFGW 72
           A+N TFKP YLVQVQKLMKEKI  SNIQVT NLESRVK LKKQYT IA+M+GPACS FGW
Sbjct: 36  ANNETFKPRYLVQVQKLMKEKIPRSNIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGW 95

Query: 73  NEERKCIEAEKSVFYDWVK 91
           NEERKCIEAEKSVF DWVK
Sbjct: 96  NEERKCIEAEKSVFDDWVK 114

The following BLAST results are available for this feature:

BLAST of IVF0021981 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0021981 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U7F7	3.3e-33	69.83	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TF70	1.1e-31	87.65	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A0A0KNB4	1.1e-31	74.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G420360 PE=4 SV=1	[more]
A0A5A7SW62	6.8e-31	65.79	Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3DTL0	6.8e-31	65.79	Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of IVF0021981 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51053.1	8.23e-43	74.04	hypothetical protein Csa_009100 [Cucumis sativus]	[more]
KAA0050106.1	1.41e-41	87.80	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0041970.1	9.14e-40	87.65	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK17906.1 putative nucleas...	[more]
XP_031741735.1	1.16e-39	74.26	uncharacterized protein At2g29880-like [Cucumis sativus]	[more]
TYJ96933.1	1.25e-37	84.81	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0021981 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 10..85 e-value: 7.5E-7 score: 30.1
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 9..92
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 9..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0021981.2	IVF0021981.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003735	structural constituent of ribosome