IVF0021875 (gene) Melon (IVF77) v1

Overview


Name	IVF0021875
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr04: 20791041 .. 20791406 (-)
RNA-Seq Expression	IVF0021875
Synteny	IVF0021875

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCTGGCCAGAAAGTTAATTGGGAAAAATCAGCCTTGTGTGGTGTTAATGTTGATGAGATTGAACTGATGTCTACTGCTTCAAGTTTGGGCTGCAAGGCTGATCATCTTCCTTTATTTTACCTTGGGGTGGGTACCGAAAGCAAAGTCACATTTTGGCAACCAGTGATTGATAAAGTACACAAAAATTTAGATAAGTGGAAAAGATTTAACTTATCTAGGGGAGGAAGAGCGACATTATGCAAATCGGTTTTATCAAATCTGCCTACTTATTGCATGCCAACCTTTTTAATGCCTGAAGGGTCAGTGGCAGATCGTTGGGACAGCTCCTTGGCTTCTCGGTCCATCTCTTTTTGGCGTTAA

mRNA sequence

ATGGCGTCTGGCCAGAAAGTTAATTGGGAAAAATCAGCCTTGTGTGGTGTTAATGTTGATGAGATTGAACTGATGTCTACTGCTTCAAGTTTGGGCTGCAAGGCTGATCATCTTCCTTTATTTTACCTTGGGGTGGGTACCGAAAGCAAAGTCACATTTTGGCAACCAGTGATTGATAAAGTACACAAAAATTTAGATAAGTGGAAAAGATTTAACTTATCTAGGGGAGGAAGAGCGACATTATGCAAATCGGTTTTATCAAATCTGCCTACTTATTGCATGCCAACCTTTTTAATGCCTGAAGGGTCAGTGGCAGATCGTTGGGACAGCTCCTTGGCTTCTCGGTCCATCTCTTTTTGGCGTTAA

Coding sequence (CDS)

ATGGCGTCTGGCCAGAAAGTTAATTGGGAAAAATCAGCCTTGTGTGGTGTTAATGTTGATGAGATTGAACTGATGTCTACTGCTTCAAGTTTGGGCTGCAAGGCTGATCATCTTCCTTTATTTTACCTTGGGGTGGGTACCGAAAGCAAAGTCACATTTTGGCAACCAGTGATTGATAAAGTACACAAAAATTTAGATAAGTGGAAAAGATTTAACTTATCTAGGGGAGGAAGAGCGACATTATGCAAATCGGTTTTATCAAATCTGCCTACTTATTGCATGCCAACCTTTTTAATGCCTGAAGGGTCAGTGGCAGATCGTTGGGACAGCTCCTTGGCTTCTCGGTCCATCTCTTTTTGGCGTTAA

Protein sequence

MASGQKVNWEKSALCGVNVDEIELMSTASSLGCKADHLPLFYLGVGTESKVTFWQPVIDKVHKNLDKWKRFNLSRGGRATLCKSVLSNLPTYCMPTFLMPEGSVADRWDSSLASRSISFWR

Homology

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BLAST of IVF0021875 vs. ExPASy TrEMBL
Match: A0A5A7U808 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001400 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.5e-25
Identity = 59/101 (58.42%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 3   SGQKVNWEKSALCGVNVDEIELMSTASSLGCKADHLPLFYLGV---GTESKVTFWQPVID 62
           S +K+NWEKSA+C VN+++ +  S AS L CK + LPL Y G+   G      FWQPV+D
Sbjct: 700 SRKKINWEKSAICSVNIEDSKTSSAASMLNCKIEKLPLLYQGLPLGGYPKSAHFWQPVLD 759

Query: 63  KVHKNLDKWKRFNLSRGGRATLCKSVLSNLPTYCMPTFLMP 101
           K  K L  WKR NLSRGGR TLC SVLSN PTY M TFLMP
Sbjct: 760 KEQKKLHIWKRLNLSRGGRLTLCSSVLSNPPTYFMSTFLMP 800

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BLAST of IVF0021875 vs. ExPASy TrEMBL
Match: A0A5A7TLN3 (Transposon Tf2-9 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G006040 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 4.2e-25
Identity = 55/102 (53.92%), Postives = 71/102 (69.61%), Query Frame = 0


Query: 3   SGQKVNWEKSALCGVNVDEIELMSTASSLGCKADHLPLFYLGV---GTESKVTFWQPVID 62
           SG KVNW+KS L GVN+ + EL+  A  L CK + LP  YLG+   G   +  FW+P+ID
Sbjct: 36  SGHKVNWDKSTLSGVNMGDDELLHMAGKLCCKVEKLPFLYLGLLLGGYPRQKVFWEPMID 95

Query: 63  KVHKNLDKWKRFNLSRGGRATLCKSVLSNLPTYCMPTFLMPE 102
           +VHK LD+WK FN+SRGGR TLC S+L+N PTY +  F +PE
Sbjct: 96  RVHKKLDRWKMFNISRGGRQTLCNSILANCPTYYLSIFAIPE 137

[Close]

BLAST of IVF0021875 vs. ExPASy TrEMBL
Match: A0A5D3BF26 (Putative LRR receptor-like serine/threonine-protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00080 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 5.7e-22
Identity = 51/95 (53.68%), Postives = 67/95 (70.53%), Query Frame = 0


Query: 1   MASGQKVNWEKSALCGVNVDEIELMSTASSLGCKADHLPLFYLGV---GTESKVTFWQPV 60
           + S QKVNWEKSAL GV++ E  L+ TA  + CKA++LP+ YL +   G      FWQPV
Sbjct: 14  LCSRQKVNWEKSALSGVSIPEDILLQTADRMSCKAENLPIVYLSLPLGGYPQHQDFWQPV 73

Query: 61  IDKVHKNLDKWKRFNLSRGGRATLCKSVLSNLPTY 93
           ID++HK LD+WK FN+ RGGR  LC +VL++L TY
Sbjct: 74  IDRIHKKLDRWKHFNIPRGGRQILCNAVLTSLQTY 108

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BLAST of IVF0021875 vs. ExPASy TrEMBL
Match: A0A5D3D2G4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002220 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.6e-19
Identity = 46/98 (46.94%), Postives = 69/98 (70.41%), Query Frame = 0


Query: 6   KVNWEKSALCGVNVDEIELMSTASSLGCKADHLPLFYLG--VGTESKVTFWQPVIDKVHK 65
           +V+W+KSAL GVN+ E  L+     +G KA++LP+ Y+G  +G   +  FWQPVID +HK
Sbjct: 82  EVSWKKSALSGVNISEDILLQIVDRIGYKAENLPIAYIGLPLGGYPRRQFWQPVIDLIHK 141

Query: 66  NLDKWKRFNLSRGGRATLCKSVLSNLPTYCMPTFLMPE 102
            L++WK  N+SRGGR  LCK++L++ PTY +  F +P+
Sbjct: 142 KLNRWKPVNISRGGRKILCKAILASFPTYYLSWFSIPQ 179

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BLAST of IVF0021875 vs. ExPASy TrEMBL
Match: A0A5D3BQV1 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001420 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.7e-18
Identity = 48/77 (62.34%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 3   SGQKVNWEKSALCGVNVDEIELMSTASSLGCKADHLPLFYLGV---GTESKVTFWQPVID 62
           SGQKVNW+KSALCG+NV E EL+S A++L  K DHLP+ YLG+   G   +++ WQ V D
Sbjct: 205 SGQKVNWDKSALCGINVAESELLSMATTLKDKVDHLPVIYLGLPLGGYLKQISLWQLVSD 264

Query: 63  KVHKNLDKWKRFNLSRG 77
           KVH  LDKWKRFN SRG
Sbjct: 265 KVHAKLDKWKRFNRSRG 281

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BLAST of IVF0021875 vs. NCBI nr
Match: XP_038880332.1 (uncharacterized protein LOC120071973 [Benincasa hispida])

HSP 1 Score: 143 bits (360), Expect = 1.34e-38
Identity = 65/102 (63.73%), Postives = 80/102 (78.43%), Query Frame = 0


Query: 3   SGQKVNWEKSALCGVNVDEIELMSTASSLGCKADHLPLFYLGV---GTESKVTFWQPVID 62
           S QKVNWEKSA+CG+N++E +++S A+ L CK  HLPL YLG+   G    V+FWQPVID
Sbjct: 124 SSQKVNWEKSAICGINIEENKMLSVAAQLNCKVKHLPLMYLGLPLGGYPKNVSFWQPVID 183

Query: 63  KVHKNLDKWKRFNLSRGGRATLCKSVLSNLPTYCMPTFLMPE 101
           K+   LDKW+RFNLSRGG+ATLCKSV SNLPTY +  FL+PE
Sbjct: 184 KLQGKLDKWRRFNLSRGGKATLCKSVHSNLPTYYLSLFLLPE 225

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BLAST of IVF0021875 vs. NCBI nr
Match: XP_038889274.1 (uncharacterized protein LOC120079176 [Benincasa hispida])

HSP 1 Score: 130 bits (327), Expect = 1.30e-32
Identity = 64/92 (69.57%), Postives = 72/92 (78.26%), Query Frame = 0


Query: 3   SGQKVNWEKSALCGVNVDEIELMSTASSLGCKADHLPLFYLGV---GTESKVTFWQPVID 62
           SGQKVNWEKSAL G+NVDE EL+STA+SL CKADHLP  YLG+   G   K++FWQPV++
Sbjct: 439 SGQKVNWEKSALYGINVDENELISTAASLNCKADHLPFSYLGLPLGGYLKKLSFWQPVLN 498

Query: 63  KVHKNLDKWKRFNLSRGGRATLCKSVLSNLPT 91
                LDKWK FNLSRG R TLC SVLSNLPT
Sbjct: 499 NFQAKLDKWKHFNLSRGVRVTLCMSVLSNLPT 530

[Close]

BLAST of IVF0021875 vs. NCBI nr
Match: KAA0051398.1 (Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (305), Expect = 2.74e-29
Identity = 59/101 (58.42%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 3   SGQKVNWEKSALCGVNVDEIELMSTASSLGCKADHLPLFYLGV---GTESKVTFWQPVID 62
           S +K+NWEKSA+C VN+++ +  S AS L CK + LPL Y G+   G      FWQPV+D
Sbjct: 700 SRKKINWEKSAICSVNIEDSKTSSAASMLNCKIEKLPLLYQGLPLGGYPKSAHFWQPVLD 759

Query: 63  KVHKNLDKWKRFNLSRGGRATLCKSVLSNLPTYCMPTFLMP 100
           K  K L  WKR NLSRGGR TLC SVLSN PTY M TFLMP
Sbjct: 760 KEQKKLHIWKRLNLSRGGRLTLCSSVLSNPPTYFMSTFLMP 800

[Close]

BLAST of IVF0021875 vs. NCBI nr
Match: KAA0044242.1 (Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (304), Expect = 3.89e-29
Identity = 55/102 (53.92%), Postives = 71/102 (69.61%), Query Frame = 0


Query: 3   SGQKVNWEKSALCGVNVDEIELMSTASSLGCKADHLPLFYLGV---GTESKVTFWQPVID 62
           SG KVNW+KS L GVN+ + EL+  A  L CK + LP  YLG+   G   +  FW+P+ID
Sbjct: 36  SGHKVNWDKSTLSGVNMGDDELLHMAGKLCCKVEKLPFLYLGLLLGGYPRQKVFWEPMID 95

Query: 63  KVHKNLDKWKRFNLSRGGRATLCKSVLSNLPTYCMPTFLMPE 101
           +VHK LD+WK FN+SRGGR TLC S+L+N PTY +  F +PE
Sbjct: 96  RVHKKLDRWKMFNISRGGRQTLCNSILANCPTYYLSIFAIPE 137

[Close]

BLAST of IVF0021875 vs. NCBI nr
Match: TYJ97221.1 (putative LRR receptor-like serine/threonine-protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (276), Expect = 2.24e-25
Identity = 51/95 (53.68%), Postives = 67/95 (70.53%), Query Frame = 0


Query: 1   MASGQKVNWEKSALCGVNVDEIELMSTASSLGCKADHLPLFYLGV---GTESKVTFWQPV 60
           + S QKVNWEKSAL GV++ E  L+ TA  + CKA++LP+ YL +   G      FWQPV
Sbjct: 14  LCSRQKVNWEKSALSGVSIPEDILLQTADRMSCKAENLPIVYLSLPLGGYPQHQDFWQPV 73

Query: 61  IDKVHKNLDKWKRFNLSRGGRATLCKSVLSNLPTY 92
           ID++HK LD+WK FN+ RGGR  LC +VL++L TY
Sbjct: 74  IDRIHKKLDRWKHFNIPRGGRQILCNAVLTSLQTY 108

The following BLAST results are available for this feature:

BLAST of IVF0021875 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0021875 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U808	2.5e-25	58.42	Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A5A7TLN3	4.2e-25	53.92	Transposon Tf2-9 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5D3BF26	5.7e-22	53.68	Putative LRR receptor-like serine/threonine-protein kinase OS=Cucumis melo var. ...	[more]
A0A5D3D2G4	1.6e-19	46.94	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BQV1	1.7e-18	62.34	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of IVF0021875 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880332.1	1.34e-38	63.73	uncharacterized protein LOC120071973 [Benincasa hispida]	[more]
XP_038889274.1	1.30e-32	69.57	uncharacterized protein LOC120079176 [Benincasa hispida]	[more]
KAA0051398.1	2.74e-29	58.42	Integrase, catalytic core [Cucumis melo var. makuwa]	[more]
KAA0044242.1	3.89e-29	53.92	Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]	[more]
TYJ97221.1	2.24e-25	53.68	putative LRR receptor-like serine/threonine-protein kinase [Cucumis melo var. ma...	[more]

BLAST of IVF0021875 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33116:SF47	REVERSE TRANSCRIPTASE DOMAIN, ZINC FINGER, CCHC-TYPE-RELATED	coord: 2..100
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 2..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0021875.1	IVF0021875.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding
molecular_function	GO:0016772	transferase activity, transferring phosphorus-containing groups