IVF0021843 (gene) Melon (IVF77) v1

Overview


Name	IVF0021843
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Protein pleiotropic regulatory locus 1
Location	chr08: 5607203 .. 5608190 (+)
RNA-Seq Expression	IVF0021843
Synteny	IVF0021843

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATACTCATTTTCATCTTCTTTTTTTTTCTTTCGTTCATCTCCGGCGATTCCTCTGCTTCACCGGCTTTCGTAGGCGGTTTCCGACGGTTGAGAATATCTTATTGTTAAACATTCGGTAATTATGGAAAGAATCGGAATCAAGTGACCCCGTCGGGATTGGTAAAATTACAGGGTCATAAGTGGTCACCTAAGTTGTGTAGGGTCTGTTGCATTTGATCCAAGTAGCATGTGTTTTTGTACTGGATCAGTAGATTGTACCAACGGGATTTGAGATGAAGAACAAGTCAAATGCTGGGATCTCTAACAGAACAAGGTAATCAGTTCTTATCTTGGGTGTTTATTATCTGGCTCTTCATCCAACTATTGATATTTTGATTACTGCGGGTCGTGATTCTGTCTGTCGAATTTTTGACATTCGAGGTTTAAATTGATGCCCTTTCAAGACATGGTAACACAATTTGCTCTGTTTTTTTTCTCGACCCACTGATTTACAGGTTGTGATTGTCTCCCATGACCTAACTATTACGTTTTGGGATCGTAGATATGGAAAAACAATGACAACTCTAACACATCAGAAGAAATCTATTCGAGCAATGGCACAACATCCTAACAACACAGTGTCTTTGCATCTGCTTCAGCGGATAATATCAAGAAATTTAATCTTCCCAGAGGGGAGTTTGGGCAGAACATGCGGTGGATGTCAGTGAGAAGGGTGTAATGGTGAGTGGAGTTGACAATGGTAGTTTATGGTTCTGGGATTGGAATACTGCTTATAACTTTCAGCGATCACAAACAACTGCTCAACCTGGCTCGTTGGATAGTGAAGCTGGGATTTATGCTCTTTCCTATAACATAACTGGTTCGAGGCTTGTAACTTGTGAAGCAGATAAAACTAATAGATGTGGATAGAAGATGAAAATGCTACCCCTATAACTGACTATCTCTTCAAAAATATCAAGCCATCCGAAGATATACGAAGACTCTAG

mRNA sequence

AAATACTCATTTTCATCTTCTTTTTTTTTCTTTCGTTCATCTCCGGCGATTCCTCTGCTTCACCGGCTTTCGTAGGCGGTTTCCGACGGTTGAGAATATCTTATTGTTAAACATTCGGTAATTATGGAAAGAATCGGAATCAAGTGACCCCGTCGGGATTGGTAAAATTACAGGGTCATAAGTGGTCACCTAAGTTGTGTAGGGTCTGTTGCATTTGATCCAAGTAGCATGTGTTTTTGTACTGGATCAGTAGATTGTACCAACGGGATTTGAGATGAAGAACAAGTCAAATGCTGGGATCTCTAACAGAACAAGGTTGTGATTGTCTCCCATGACCTAACTATTACGTTTTGGGATCGTAGATATGGAAAAACAATGACAACTCTAACACATCAGAAGAAATCTATTCGAGCAATGGCACAACATCCTAACAACACAGTGTCTTTGCATCTGCTTCAGCGGATAATATCAAGAAATTTAATCTTCCCAGAGGGGAGTTTGGGCAGAACATGCGGTGGATGTCAGTGAGAAGGGTGTAATGGTGAGTGGAGTTGACAATGGTAGTTTATGGTTCTGGGATTGGAATACTGCTTATAACTTTCAGCGATCACAAACAACTGCTCAACCTGGCTCGTTGGATAGTGAAGCTGGGATTTATGCTCTTTCCTATAACATAACTGGTTCGAGGCTTGTAACTTGTGAAGCAGATAAAACTAATAGATGTGGATAGAAGATGAAAATGCTACCCCTATAACTGACTATCTCTTCAAAAATATCAAGCCATCCGAAGATATACGAAGACTCTAG

Coding sequence (CDS)

ATGGTGAGTGGAGTTGACAATGGTAGTTTATGGTTCTGGGATTGGAATACTGCTTATAACTTTCAGCGATCACAAACAACTGCTCAACCTGGCTCGTTGGATAGTGAAGCTGGGATTTATGCTCTTTCCTATAACATAACTGGTTCGAGGCTTGTAACTTGTGAAGCAGATAAAACTAATAGATGTGGATAG

Protein sequence

MVSGVDNGSLWFWDWNTAYNFQRSQTTAQPGSLDSEAGIYALSYNITGSRLVTCEADKTNRCG

Homology

[Close]

BLAST of IVF0021843 vs. ExPASy Swiss-Prot
Match: Q42384 (Protein pleiotropic regulatory locus 1 OS=Arabidopsis thaliana OX=3702 GN=PRL1 PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 4.6e-20
Identity = 42/59 (71.19%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 1   MVSGVDNGSLWFWDWNTAYNFQRSQTTAQPGSLDSEAGIYALSYNITGSRLVTCEADKT 60
           MV+G DNGS+WFWDW + ++FQ+S+T  QPGSL+SEAGIYA  Y+ TGSRLVTCEADKT
Sbjct: 400 MVTGGDNGSIWFWDWKSGHSFQQSETIVQPGSLESEAGIYAACYDNTGSRLVTCEADKT 458

[Close]

BLAST of IVF0021843 vs. ExPASy Swiss-Prot
Match: Q39190 (Protein pleiotropic regulator PRL2 OS=Arabidopsis thaliana OX=3702 GN=PRL2 PE=2 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 2.3e-19
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 1   MVSGVDNGSLWFWDWNTAYNFQRSQTTAQPGSLDSEAGIYALSYNITGSRLVTCEADKT 60
           MV+G D G LWFWDW + +NFQR++T  QPGSL+SEAGIYA  Y+ TGSRLVTCE DKT
Sbjct: 393 MVTGGDKGGLWFWDWKSGHNFQRAETIVQPGSLESEAGIYAACYDQTGSRLVTCEGDKT 451

[Close]

BLAST of IVF0021843 vs. ExPASy Swiss-Prot
Match: O13615 (Pre-mRNA-splicing factor prp5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=prp5 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.0e-16
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 1   MVSGVDNGSLWFWDWNTAYNFQRSQTTAQPGSLDSEAGIYALSYNITGSRLVTCEADKT 60
           M SG DNGS+ FWDW + + +Q  Q+  QPGSLDSEAGI+A S++ TG RL+TCEADK+
Sbjct: 386 MFSGADNGSMCFWDWKSGHKYQELQSVVQPGSLDSEAGIFASSFDKTGLRLITCEADKS 444

[Close]

BLAST of IVF0021843 vs. ExPASy Swiss-Prot
Match: Q2KID6 (Pleiotropic regulator 1 OS=Bos taurus OX=9913 GN=PLRG1 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.4e-15
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 1   MVSGVDNGSLWFWDWNTAYNFQRSQTTAQPGSLDSEAGIYALSYNITGSRLVTCEADKT 60
           +VSG DNG++  WDW T YNFQR     QPGSLDSE+GI+A +++ + SRL+T EADKT
Sbjct: 426 LVSGADNGTMHLWDWRTGYNFQRVHAAVQPGSLDSESGIFACAFDQSESRLLTAEADKT 484

[Close]

BLAST of IVF0021843 vs. ExPASy Swiss-Prot
Match: O43660 (Pleiotropic regulator 1 OS=Homo sapiens OX=9606 GN=PLRG1 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.4e-15
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 1   MVSGVDNGSLWFWDWNTAYNFQRSQTTAQPGSLDSEAGIYALSYNITGSRLVTCEADKT 60
           +VSG DNG++  WDW T YNFQR     QPGSLDSE+GI+A +++ + SRL+T EADKT
Sbjct: 427 LVSGADNGTMHLWDWRTGYNFQRVHAAVQPGSLDSESGIFACAFDQSESRLLTAEADKT 485

[Close]

BLAST of IVF0021843 vs. ExPASy TrEMBL
Match: A0A5D3CQ93 (Protein pleiotropic regulatory locus 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001800 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.1e-29
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MVSGVDNGSLWFWDWNTAYNFQRSQTTAQPGSLDSEAGIYALSYNITGSRLVTCEADKTN 60
          MVSGVDNGSLWFWDWNTAYNFQRSQTTAQPGSLDSEAGIYALSYNITGSRLVTCEADKTN
Sbjct: 30 MVSGVDNGSLWFWDWNTAYNFQRSQTTAQPGSLDSEAGIYALSYNITGSRLVTCEADKTN 89

Query: 61 RCG 64
          RCG
Sbjct: 90 RCG 92

[Close]

BLAST of IVF0021843 vs. ExPASy TrEMBL
Match: A0A0A0KM95 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G504425 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.0e-22
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 3  SGVDNGSLWFWDWNTAYNFQRSQTTAQPGSLDSEAGIYALSYNITGSRLVTCEADKTNRC 62
          SG DNG LWFWDW TAYNFQ+SQT AQP SLDSEAGIYALSY+I GSRLVTCEADKT RC
Sbjct: 6  SGGDNGILWFWDWKTAYNFQQSQTIAQPSSLDSEAGIYALSYDIAGSRLVTCEADKTIRC 65

Query: 63 G 64
          G
Sbjct: 66 G 66

[Close]

BLAST of IVF0021843 vs. ExPASy TrEMBL
Match: A0A1S3C7C3 (protein pleiotropic regulatory locus 1 OS=Cucumis melo OX=3656 GN=LOC103497843 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.3e-21
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1   MVSGVDNGSLWFWDWNTAYNFQRSQTTAQPGSLDSEAGIYALSYNITGSRLVTCEADKT 60
           MV+G DNGSLWFWDW + +NFQ+SQT  QPGSLDSEAGIYALSY+ITGSRLVTCEADKT
Sbjct: 397 MVTGGDNGSLWFWDWKSGHNFQQSQTIVQPGSLDSEAGIYALSYDITGSRLVTCEADKT 455

[Close]

BLAST of IVF0021843 vs. ExPASy TrEMBL
Match: A0A6J1CB66 (protein pleiotropic regulatory locus 1 OS=Momordica charantia OX=3673 GN=LOC111009634 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.6e-21
Identity = 48/59 (81.36%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1   MVSGVDNGSLWFWDWNTAYNFQRSQTTAQPGSLDSEAGIYALSYNITGSRLVTCEADKT 60
           MV+G DNGSLWFWDW + +NFQ+SQT  QPGSLDSEAGIYALSY+ITGSRL+TCEADKT
Sbjct: 397 MVTGGDNGSLWFWDWKSGHNFQQSQTIVQPGSLDSEAGIYALSYDITGSRLITCEADKT 455

[Close]

BLAST of IVF0021843 vs. ExPASy TrEMBL
Match: W1P3X1 (WD_REPEATS_REGION domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00045p00233670 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.6e-21
Identity = 46/59 (77.97%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1   MVSGVDNGSLWFWDWNTAYNFQRSQTTAQPGSLDSEAGIYALSYNITGSRLVTCEADKT 60
           MV+G DNGSLWFWDWN+ +NFQ++QT  QPGSLDSEAGIYALSY++TGSRL++CEADKT
Sbjct: 409 MVTGGDNGSLWFWDWNSGHNFQQAQTIVQPGSLDSEAGIYALSYDVTGSRLISCEADKT 467

[Close]

BLAST of IVF0021843 vs. NCBI nr
Match: KAA0025721.1 (protein pleiotropic regulatory locus 1 [Cucumis melo var. makuwa] >TYK12596.1 protein pleiotropic regulatory locus 1 [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (346), Expect = 1.24e-40
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MVSGVDNGSLWFWDWNTAYNFQRSQTTAQPGSLDSEAGIYALSYNITGSRLVTCEADKTN 60
          MVSGVDNGSLWFWDWNTAYNFQRSQTTAQPGSLDSEAGIYALSYNITGSRLVTCEADKTN
Sbjct: 30 MVSGVDNGSLWFWDWNTAYNFQRSQTTAQPGSLDSEAGIYALSYNITGSRLVTCEADKTN 89

Query: 61 RCG 63
          RCG
Sbjct: 90 RCG 92

[Close]

BLAST of IVF0021843 vs. NCBI nr
Match: KGN48861.1 (hypothetical protein Csa_003772 [Cucumis sativus])

HSP 1 Score: 113 bits (282), Expect = 4.30e-31
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 3  SGVDNGSLWFWDWNTAYNFQRSQTTAQPGSLDSEAGIYALSYNITGSRLVTCEADKTNRC 62
          SG DNG LWFWDW TAYNFQ+SQT AQP SLDSEAGIYALSY+I GSRLVTCEADKT RC
Sbjct: 6  SGGDNGILWFWDWKTAYNFQQSQTIAQPSSLDSEAGIYALSYDIAGSRLVTCEADKTIRC 65

[Close]

BLAST of IVF0021843 vs. NCBI nr
Match: XP_023901316.1 (protein pleiotropic regulatory locus 1-like [Quercus suber])

HSP 1 Score: 105 bits (263), Expect = 1.01e-27
Identity = 45/59 (76.27%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 1  MVSGVDNGSLWFWDWNTAYNFQRSQTTAQPGSLDSEAGIYALSYNITGSRLVTCEADKT 59
          M +G DNGS+WFWDW + +NFQ+SQT  QPGSLDSEAGIYALSY++TGSRL+TCEADKT
Sbjct: 26 MATGGDNGSMWFWDWKSGHNFQQSQTIVQPGSLDSEAGIYALSYDLTGSRLITCEADKT 84

[Close]

BLAST of IVF0021843 vs. NCBI nr
Match: KAG5544791.1 (hypothetical protein RHGRI_017286 [Rhododendron griersonianum])

HSP 1 Score: 105 bits (263), Expect = 1.13e-27
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 1  MVSGVDNGSLWFWDWNTAYNFQRSQTTAQPGSLDSEAGIYALSYNITGSRLVTCEADKT 59
          MV+G DNGSLWFWDW + +NFQ+SQT  QPGSLDSEAGIYA SY++TG+RLVTCEADKT
Sbjct: 30 MVTGGDNGSLWFWDWQSGHNFQQSQTIVQPGSLDSEAGIYACSYDVTGTRLVTCEADKT 88

[Close]

BLAST of IVF0021843 vs. NCBI nr
Match: PSS18227.1 (Protein pleiotropic regulatory locus 1 like [Actinidia chinensis var. chinensis])

HSP 1 Score: 106 bits (265), Expect = 1.46e-27
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 1   MVSGVDNGSLWFWDWNTAYNFQRSQTTAQPGSLDSEAGIYALSYNITGSRLVTCEADKT 59
           MV+G DNGSLWFWDW + +NFQ+ QT  QPGSLDSEAGIYA+SY++TGSRLVTCEADKT
Sbjct: 64  MVTGGDNGSLWFWDWKSGHNFQQDQTIVQPGSLDSEAGIYAISYDVTGSRLVTCEADKT 122

[Close]

BLAST of IVF0021843 vs. TAIR 10
Match: AT4G15900.1 (pleiotropic regulatory locus 1 )

HSP 1 Score: 97.8 bits (242), Expect = 3.2e-21
Identity = 42/59 (71.19%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 1   MVSGVDNGSLWFWDWNTAYNFQRSQTTAQPGSLDSEAGIYALSYNITGSRLVTCEADKT 60
           MV+G DNGS+WFWDW + ++FQ+S+T  QPGSL+SEAGIYA  Y+ TGSRLVTCEADKT
Sbjct: 400 MVTGGDNGSIWFWDWKSGHSFQQSETIVQPGSLESEAGIYAACYDNTGSRLVTCEADKT 458

[Close]

BLAST of IVF0021843 vs. TAIR 10
Match: AT3G16650.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 95.5 bits (236), Expect = 1.6e-20
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 1   MVSGVDNGSLWFWDWNTAYNFQRSQTTAQPGSLDSEAGIYALSYNITGSRLVTCEADKT 60
           MV+G D G LWFWDW + +NFQR++T  QPGSL+SEAGIYA  Y+ TGSRLVTCE DKT
Sbjct: 393 MVTGGDKGGLWFWDWKSGHNFQRAETIVQPGSLESEAGIYAACYDQTGSRLVTCEGDKT 451

The following BLAST results are available for this feature:

BLAST of IVF0021843 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q42384	4.6e-20	71.19	Protein pleiotropic regulatory locus 1 OS=Arabidopsis thaliana OX=3702 GN=PRL1 P...	[more]
Q39190	2.3e-19	69.49	Protein pleiotropic regulator PRL2 OS=Arabidopsis thaliana OX=3702 GN=PRL2 PE=2 ...	[more]
O13615	4.0e-16	61.02	Pre-mRNA-splicing factor prp5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
Q2KID6	3.4e-15	59.32	Pleiotropic regulator 1 OS=Bos taurus OX=9913 GN=PLRG1 PE=2 SV=1	[more]
O43660	3.4e-15	59.32	Pleiotropic regulator 1 OS=Homo sapiens OX=9606 GN=PLRG1 PE=1 SV=1	[more]

BLAST of IVF0021843 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CQ93	1.1e-29	100.00	Protein pleiotropic regulatory locus 1 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A0A0KM95	3.0e-22	85.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G504425 PE=4 SV=1	[more]
A0A1S3C7C3	4.3e-21	83.05	protein pleiotropic regulatory locus 1 OS=Cucumis melo OX=3656 GN=LOC103497843 P...	[more]
A0A6J1CB66	5.6e-21	81.36	protein pleiotropic regulatory locus 1 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
W1P3X1	9.6e-21	77.97	WD_REPEATS_REGION domain-containing protein OS=Amborella trichopoda OX=13333 GN=...	[more]

BLAST of IVF0021843 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025721.1	1.24e-40	100.00	protein pleiotropic regulatory locus 1 [Cucumis melo var. makuwa] >TYK12596.1 pr...	[more]
KGN48861.1	4.30e-31	85.25	hypothetical protein Csa_003772 [Cucumis sativus]	[more]
XP_023901316.1	1.01e-27	76.27	protein pleiotropic regulatory locus 1-like [Quercus suber]	[more]
KAG5544791.1	1.13e-27	77.97	hypothetical protein RHGRI_017286 [Rhododendron griersonianum]	[more]
PSS18227.1	1.46e-27	77.97	Protein pleiotropic regulatory locus 1 like [Actinidia chinensis var. chinensis]	[more]

BLAST of IVF0021843 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15900.1	3.2e-21	71.19	pleiotropic regulatory locus 1	[more]
AT3G16650.1	1.6e-20	69.49	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 1..62 e-value: 2.4E-10 score: 41.7
None	No IPR available	PANTHER	PTHR19923	WD40 REPEAT PROTEINPRL1/PRL2-RELATED	coord: 1..61
None	No IPR available	PANTHER	PTHR19923:SF1	BNAA01G27690D PROTEIN	coord: 1..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0021843.1	IVF0021843.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0080008	Cul4-RING E3 ubiquitin ligase complex
cellular_component	GO:0000974	Prp19 complex
molecular_function	GO:0005515	protein binding