IVF0021750 (gene) Melon (IVF77) v1

Overview


Name	IVF0021750
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Prostatic spermine-binding protein
Location	chr08: 4937833 .. 4938054 (-)
RNA-Seq Expression	IVF0021750
Synteny	IVF0021750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATCAGTGTCTTTGGAAGCTTTCGCAATGGCCGGAATGGAGTACTCCGGAGAGTGGGGGATAGATGTCGAGAAATGGGAAAGCCAAGACTTGGATTACTGCCCTCCGCCGTATCTACTGGCGGAAGGACGAGTTAACGATAACGATAATAAGGACAAAGCGTCGGATCAACAACGTCCAAGTCTTTCAGAGCCTCCGTCGCAGGCTTGCCGTTCATGA

mRNA sequence

ATGTCATCAGTGTCTTTGGAAGCTTTCGCAATGGCCGGAATGGAGTACTCCGGAGAGTGGGGGATAGATGTCGAGAAATGGGAAAGCCAAGACTTGGATTACTGCCCTCCGCCGTATCTACTGGCGGAAGGACGAGTTAACGATAACGATAATAAGGACAAAGCGTCGGATCAACAACGTCCAAGTCTTTCAGAGCCTCCGTCGCAGGCTTGCCGTTCATGA

Coding sequence (CDS)

ATGTCATCAGTGTCTTTGGAAGCTTTCGCAATGGCCGGAATGGAGTACTCCGGAGAGTGGGGGATAGATGTCGAGAAATGGGAAAGCCAAGACTTGGATTACTGCCCTCCGCCGTATCTACTGGCGGAAGGACGAGTTAACGATAACGATAATAAGGACAAAGCGTCGGATCAACAACGTCCAAGTCTTTCAGAGCCTCCGTCGCAGGCTTGCCGTTCATGA

Protein sequence

MSSVSLEAFAMAGMEYSGEWGIDVEKWESQDLDYCPPPYLLAEGRVNDNDNKDKASDQQRPSLSEPPSQACRS

Homology

[Close]

BLAST of IVF0021750 vs. ExPASy TrEMBL
Match: A0A5D3CMY4 (Prostatic spermine-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002900 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 5.1e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MSSVSLEAFAMAGMEYSGEWGIDVEKWESQDLDYCPPPYLLAEGRVNDNDNKDKASDQQR 60
          MSSVSLEAFAMAGMEYSGEWGIDVEKWESQDLDYCPPPYLLAEGRVNDNDNKDKASDQQR
Sbjct: 1  MSSVSLEAFAMAGMEYSGEWGIDVEKWESQDLDYCPPPYLLAEGRVNDNDNKDKASDQQR 60

Query: 61 PSLSEPPSQACRS 74
          PSLSEPPSQACRS
Sbjct: 61 PSLSEPPSQACRS 73

[Close]

BLAST of IVF0021750 vs. ExPASy TrEMBL
Match: A0A0A0KK23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G499860 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 6.5e-29
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = 0


Query: 1  MSSVSLEAFAMAGMEYSGEWGIDVEKWESQDLDYCPPPYLLAEGRVNDNDNKDKASDQQR 60
          MSSVSLEAFAMAGMEYSGEWGIDVE+WESQDLDYCPPPYLLAEGRVNDN   DKASD+Q 
Sbjct: 1  MSSVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVNDN---DKASDEQP 60

Query: 61 PSLSEPPSQACRS 74
          PSLSEPPSQACRS
Sbjct: 61 PSLSEPPSQACRS 70

[Close]

BLAST of IVF0021750 vs. ExPASy TrEMBL
Match: A0A6J1BW23 (uncharacterized protein LOC111005244 OS=Momordica charantia OX=3673 GN=LOC111005244 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 3  SVSLEAFAMAGMEYSGEWGIDVEKWESQDLDYCPPPYLLAEGRVND 49
          +VSLEA AMAGM+ SG WG+D ++WE+QD D  PPPYLLAEG  N+
Sbjct: 2  TVSLEALAMAGMD-SGNWGVDFDEWETQDSDQYPPPYLLAEGPDNE 46

[Close]

BLAST of IVF0021750 vs. ExPASy TrEMBL
Match: A0A5B6UUN3 (Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Gossypium australe OX=47621 GN=EPI10_004069 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.4e-07
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 3   SVSLEAFAMAGMEYSGEWGIDVEKWESQDLDYCPPPYLLAE 44
           +VS+EA AMAG++Y+ EWG+D+EKWE  D   CPPPYLLAE
Sbjct: 249 TVSIEALAMAGVDYN-EWGLDIEKWEGDDESQCPPPYLLAE 288

[Close]

BLAST of IVF0021750 vs. ExPASy TrEMBL
Match: A0A5D2LIB1 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D03G043100v1 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.3e-07
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 3  SVSLEAFAMAGMEYSGEWGIDVEKWESQDLDYCPPPYLLAE 44
          SVS+EA AMAG++Y+ EWG+D+EKWE  D   CPPP+LLAE
Sbjct: 2  SVSIEALAMAGVDYN-EWGLDIEKWEDDDDSQCPPPHLLAE 41

[Close]

BLAST of IVF0021750 vs. NCBI nr
Match: KAA0036308.1 (prostatic spermine-binding protein [Cucumis melo var. makuwa] >TYK12702.1 prostatic spermine-binding protein [Cucumis melo var. makuwa])

HSP 1 Score: 152 bits (383), Expect = 2.45e-46
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MSSVSLEAFAMAGMEYSGEWGIDVEKWESQDLDYCPPPYLLAEGRVNDNDNKDKASDQQR 60
          MSSVSLEAFAMAGMEYSGEWGIDVEKWESQDLDYCPPPYLLAEGRVNDNDNKDKASDQQR
Sbjct: 1  MSSVSLEAFAMAGMEYSGEWGIDVEKWESQDLDYCPPPYLLAEGRVNDNDNKDKASDQQR 60

Query: 61 PSLSEPPSQACRS 73
          PSLSEPPSQACRS
Sbjct: 61 PSLSEPPSQACRS 73

[Close]

BLAST of IVF0021750 vs. NCBI nr
Match: KGN48742.1 (hypothetical protein Csa_004391 [Cucumis sativus])

HSP 1 Score: 135 bits (339), Expect = 1.20e-39
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = 0


Query: 1  MSSVSLEAFAMAGMEYSGEWGIDVEKWESQDLDYCPPPYLLAEGRVNDNDNKDKASDQQR 60
          MSSVSLEAFAMAGMEYSGEWGIDVE+WESQDLDYCPPPYLLAEGRVNDND   KASD+Q 
Sbjct: 1  MSSVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVNDND---KASDEQP 60

Query: 61 PSLSEPPSQACRS 73
          PSLSEPPSQACRS
Sbjct: 61 PSLSEPPSQACRS 70

[Close]

BLAST of IVF0021750 vs. NCBI nr
Match: KAG7034201.1 (Protein SENSITIVE TO PROTON RHIZOTOXICITY 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 87.0 bits (214), Expect = 5.95e-18
Identity = 49/70 (70.00%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 3   SVSLEAFAMAGMEYSGEWGIDVEKWESQDLDYCPPPYLLAEGRVNDNDNKDKASDQQRPS 62
           SVSLEA AMAGM+ SGEWGIDVE+WE+QDLD CPPPYLLAE R     + D+AS+Q  PS
Sbjct: 364 SVSLEALAMAGMD-SGEWGIDVEEWETQDLDRCPPPYLLAEER-----DDDEASEQ--PS 423

Query: 63  LSEPPSQACR 72
            SEPPSQ+ R
Sbjct: 424 RSEPPSQSRR 425

[Close]

BLAST of IVF0021750 vs. NCBI nr
Match: KAG6604036.1 (Zinc finger protein STOP1-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.3 bits (212), Expect = 1.11e-17
Identity = 49/70 (70.00%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 3   SVSLEAFAMAGMEYSGEWGIDVEKWESQDLDYCPPPYLLAEGRVNDNDNKDKASDQQRPS 62
           SVSLEA AMAGM+ SGEWGIDVE+WE+QDLD CPPPYLLAE R     + D+AS+Q  PS
Sbjct: 359 SVSLEALAMAGMD-SGEWGIDVEEWETQDLDRCPPPYLLAEER-----DDDEASEQ--PS 418

Query: 63  LSEPPSQACR 72
            SEPPSQ+ R
Sbjct: 419 GSEPPSQSRR 420

[Close]

BLAST of IVF0021750 vs. NCBI nr
Match: XP_022132368.1 (uncharacterized protein LOC111005244 [Momordica charantia])

HSP 1 Score: 65.9 bits (159), Expect = 7.34e-12
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 3  SVSLEAFAMAGMEYSGEWGIDVEKWESQDLDYCPPPYLLAEGRVND 48
          +VSLEA AMAGM+ SG WG+D ++WE+QD D  PPPYLLAEG  N+
Sbjct: 2  TVSLEALAMAGMD-SGNWGVDFDEWETQDSDQYPPPYLLAEGPDNE 46

The following BLAST results are available for this feature:

BLAST of IVF0021750 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0021750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CMY4	5.1e-34	100.00	Prostatic spermine-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A0A0KK23	6.5e-29	91.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G499860 PE=4 SV=1	[more]
A0A6J1BW23	1.1e-07	65.22	uncharacterized protein LOC111005244 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A5B6UUN3	2.4e-07	65.85	Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Gossypium australe OX=47621 GN=EP...	[more]
A0A5D2LIB1	5.3e-07	65.85	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D03G043100v1 P...	[more]

BLAST of IVF0021750 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036308.1	2.45e-46	100.00	prostatic spermine-binding protein [Cucumis melo var. makuwa] >TYK12702.1 prosta...	[more]
KGN48742.1	1.20e-39	91.78	hypothetical protein Csa_004391 [Cucumis sativus]	[more]
KAG7034201.1	5.95e-18	70.00	Protein SENSITIVE TO PROTON RHIZOTOXICITY 1, partial [Cucurbita argyrosperma sub...	[more]
KAG6604036.1	1.11e-17	70.00	Zinc finger protein STOP1-like protein, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_022132368.1	7.34e-12	65.22	uncharacterized protein LOC111005244 [Momordica charantia]	[more]

BLAST of IVF0021750 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0021750.1	IVF0021750.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane