IVF0021714 (gene) Melon (IVF77) v1

Overview


Name	IVF0021714
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	farnesylated protein 3
Location	chr11: 29288271 .. 29288824 (+)
RNA-Seq Expression	IVF0021714
Synteny	IVF0021714

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAATGTTGCCAGAATATGAAAGGTATGAAATAAATTTAATTTCCAATTTGAATATATTTTGATATTATAGTTACTCTGATTATAATTATAACCTTGACTCCTAATCGGACTAGCTTTTGTTGAGTATACATCATGTGTCTCAACTTTAATACTATTTTAGTATTTTGTTTATTTTTATTAGGTGAATATATATAATTATATTTGAAATTATAATATTTGTATATTCTTTTGTTGTTGGATATGGAAAAAAATTAGGAGTAATCAGTGCAGAAATTGACAAGGAAGTTCCTGAACTGATAACGGTAAAGGGAGTTTTTGAAGTGAAAAAGCTTTTGGCTCACATCAGAAAAGGAGTCGAGAAAATTGTCACCGTCATCAAAGAAGAACCCGCCACTGCCGGAAGCAGCACCGCCGTCGGAGGAGAAGAACAAAGAGAGGCTGCTGGAGAAGGGAGTAGCCGTGGAGCTAACCACGAGATAGAAGCAGAAGAAGAAAAAGAAGAAGAAGACGACGGAGATGGAGAGATAAGAGTTATATATAATCCGTAA

mRNA sequence

ATGAAGAAATGTTGCCAGAATATGAAAGGAGTAATCAGTGCAGAAATTGACAAGGAAGTTCCTGAACTGATAACGGTAAAGGGAGTTTTTGAAGTGAAAAAGCTTTTGGCTCACATCAGAAAAGGAGTCGAGAAAATTGTCACCGTCATCAAAGAAGAACCCGCCACTGCCGGAAGCAGCACCGCCGTCGGAGGAGAAGAACAAAGAGAGGCTGCTGGAGAAGGGAGTAGCCGTGGAGCTAACCACGAGATAGAAGCAGAAGAAGAAAAAGAAGAAGAAGACGACGGAGATGGAGAGATAAGAGTTATATATAATCCGTAA

Coding sequence (CDS)

ATGAAGAAATGTTGCCAGAATATGAAAGGAGTAATCAGTGCAGAAATTGACAAGGAAGTTCCTGAACTGATAACGGTAAAGGGAGTTTTTGAAGTGAAAAAGCTTTTGGCTCACATCAGAAAAGGAGTCGAGAAAATTGTCACCGTCATCAAAGAAGAACCCGCCACTGCCGGAAGCAGCACCGCCGTCGGAGGAGAAGAACAAAGAGAGGCTGCTGGAGAAGGGAGTAGCCGTGGAGCTAACCACGAGATAGAAGCAGAAGAAGAAAAAGAAGAAGAAGACGACGGAGATGGAGAGATAAGAGTTATATATAATCCGTAA

Protein sequence

MKKCCQNMKGVISAEIDKEVPELITVKGVFEVKKLLAHIRKGVEKIVTVIKEEPATAGSSTAVGGEEQREAAGEGSSRGANHEIEAEEEKEEEDDGDGEIRVIYNP

Homology

[Close]

BLAST of IVF0021714 vs. ExPASy Swiss-Prot
Match: Q9C5D3 (Heavy metal-associated isoprenylated plant protein 7 OS=Arabidopsis thaliana OX=3702 GN=HIPP07 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 7.0e-05
Identity = 40/106 (37.74%), Postives = 61/106 (57.55%), Query Frame = 0


Query: 1   MKKCCQNMKGVISAEIDKEVPELITVKGVFEVKKLLAHIRKGVEKIVTVIKEE----PAT 60
           +KK    MKGV SAE D +  + +TVKGVFE +KL+ ++ K   K   ++K +    P  
Sbjct: 188 IKKRIMRMKGVESAESDLKSSQ-VTVKGVFEPQKLVEYVYKRTGKHAAIMKIDPPPPPPP 247

Query: 61  AGSSTAVGGEEQREAAGEGSSR---GANHEIEAEEEKEEEDDGDGE 100
             ++ A  GE++ E  GEG S+   G + + + +EEK+E D G GE
Sbjct: 248 EEAAAAAEGEKKEEEKGEGESKGEEGKDDKAKTDEEKKEGDGGKGE 292

[Close]

BLAST of IVF0021714 vs. ExPASy TrEMBL
Match: A0A5A7TE72 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002210 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 4.8e-41
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 10  GVISAEIDKEVPELITVKGVFEVKKLLAHIRKGVEKIVTVIKEEPATAGSSTAVGGEEQR 69
           GVISAEIDKEVPELITVKGVFEVKKLLAHIRKGVEKIVTVIKEEPATAGSSTAVGGEEQR
Sbjct: 48  GVISAEIDKEVPELITVKGVFEVKKLLAHIRKGVEKIVTVIKEEPATAGSSTAVGGEEQR 107

Query: 70  EAAGEGSSRGANHEIEAEEEKEEEDDGDGEIRVIYNP 107
           EAAGEGSSRGANHEIEAEEEKEEEDDGDGEIRVIYNP
Sbjct: 108 EAAGEGSSRGANHEIEAEEEKEEEDDGDGEIRVIYNP 144

[Close]

BLAST of IVF0021714 vs. ExPASy TrEMBL
Match: A0A0A0KDJ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G094160 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 6.5e-30
Identity = 80/102 (78.43%), Postives = 90/102 (88.24%), Query Frame = 0


Query: 8   MKGVISAEIDKEVPELITVKGVFEVKKLLAHIRKGVEKIVTVIKEEPATAGSSTAVGGEE 67
           MKGVISAEIDKEVPELITVKGVFEVKKLLAHIR+GVEKI TVIKEEPA+AG     G ++
Sbjct: 1   MKGVISAEIDKEVPELITVKGVFEVKKLLAHIRRGVEKIATVIKEEPASAG-----GEDQ 60

Query: 68  QREAAGEGSSRGANHEIEAEEEK---EEEDDGDGEIRVIYNP 107
           QREAAGEG+SRG NHEIE EEE+   +++DDGDGEIRVI+NP
Sbjct: 61  QREAAGEGTSRGPNHEIEEEEEEDDDDDDDDGDGEIRVIHNP 97

[Close]

BLAST of IVF0021714 vs. ExPASy TrEMBL
Match: A0A6J1JHA3 (uncharacterized protein LOC111486994 OS=Cucurbita maxima OX=3661 GN=LOC111486994 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.7e-14
Identity = 55/93 (59.14%), Postives = 66/93 (70.97%), Query Frame = 0


Query: 1  MKKCCQNMKGVISAEIDKEVPELITVKGVFEVKKLLAHIRKGVEKIVTVIKEEPATAGSS 60
          MKKC Q MKG+ SAE+D+E PELITVKGVFEV+KL+AH+R+GV+KIVT+IKEE A  G S
Sbjct: 1  MKKCVQRMKGIESAEVDEENPELITVKGVFEVQKLVAHLRRGVDKIVTIIKEENAAGGGS 60

Query: 61 TAVGGEEQREAAGEGSSRGANHEIEAEEEKEEE 94
             GGEE  EAA  G       EI A    +E+
Sbjct: 61 G--GGEEGIEAAAAGGGSKQKIEITAAGGGKEQ 91

[Close]

BLAST of IVF0021714 vs. NCBI nr
Match: KAA0039827.1 (hypothetical protein E6C27_scaffold122G001020 [Cucumis melo var. makuwa] >TYK24671.1 hypothetical protein E5676_scaffold266G002210 [Cucumis melo var. makuwa])

HSP 1 Score: 179 bits (453), Expect = 1.83e-55
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 10  GVISAEIDKEVPELITVKGVFEVKKLLAHIRKGVEKIVTVIKEEPATAGSSTAVGGEEQR 69
           GVISAEIDKEVPELITVKGVFEVKKLLAHIRKGVEKIVTVIKEEPATAGSSTAVGGEEQR
Sbjct: 48  GVISAEIDKEVPELITVKGVFEVKKLLAHIRKGVEKIVTVIKEEPATAGSSTAVGGEEQR 107

Query: 70  EAAGEGSSRGANHEIEAEEEKEEEDDGDGEIRVIYNP 106
           EAAGEGSSRGANHEIEAEEEKEEEDDGDGEIRVIYNP
Sbjct: 108 EAAGEGSSRGANHEIEAEEEKEEEDDGDGEIRVIYNP 144

[Close]

BLAST of IVF0021714 vs. NCBI nr
Match: KAE8646758.1 (hypothetical protein Csa_005466 [Cucumis sativus])

HSP 1 Score: 103 bits (258), Expect = 6.02e-24
Identity = 59/77 (76.62%), Postives = 65/77 (84.42%), Query Frame = 0


Query: 1   MKKCCQNMKGVISAEIDKEVPELITVKGVFEVKKLLAHIRKGVEKIVTVIKEEPATAGSS 60
           MKKCC+NMK     EIDKEVPELITVKGVFEVKKLLAHIR+GVEKI TVIKEEPA+AG  
Sbjct: 45  MKKCCKNMK-----EIDKEVPELITVKGVFEVKKLLAHIRRGVEKIATVIKEEPASAG-- 104

Query: 61  TAVGGEEQREAAGEGSS 77
              G ++QREAAGEG+S
Sbjct: 105 ---GEDQQREAAGEGTS 111

[Close]

BLAST of IVF0021714 vs. NCBI nr
Match: XP_022989967.1 (uncharacterized protein LOC111486994 [Cucurbita maxima])

HSP 1 Score: 93.6 bits (231), Expect = 8.72e-22
Identity = 51/75 (68.00%), Postives = 60/75 (80.00%), Query Frame = 0


Query: 1  MKKCCQNMKGVISAEIDKEVPELITVKGVFEVKKLLAHIRKGVEKIVTVIKEEPATAGSS 60
          MKKC Q MKG+ SAE+D+E PELITVKGVFEV+KL+AH+R+GV+KIVT+IKEE A  G S
Sbjct: 1  MKKCVQRMKGIESAEVDEENPELITVKGVFEVQKLVAHLRRGVDKIVTIIKEENAAGGGS 60

Query: 61 TAVGGEEQREAAGEG 75
             GGEE  EAA  G
Sbjct: 61 G--GGEEGIEAAAAG 73

[Close]

BLAST of IVF0021714 vs. NCBI nr
Match: KAG6600923.1 (hypothetical protein SDJN03_06156, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.5 bits (197), Expect = 9.87e-17
Identity = 46/67 (68.66%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 9  KGVISAEIDKEVPELITVKGVFEVKKLLAHIRKGVEKIVTVIKEEPATAGSSTAVGGEEQ 68
          +GV SAE+D+E PELITVKGVFEV+KL+AH+R+GV+KIVTVIKEE A  G S   GGEE 
Sbjct: 4  EGVESAEVDEENPELITVKGVFEVQKLVAHVRRGVDKIVTVIKEENAAGGGSG--GGEEG 63

Query: 69 REAAGEG 75
           EAA  G
Sbjct: 64 IEAAAAG 68

[Close]

BLAST of IVF0021714 vs. NCBI nr
Match: KAG6576124.1 (hypothetical protein SDJN03_26763, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.2 bits (165), Expect = 3.03e-12
Identity = 40/69 (57.97%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 9  KGVISAEIDKEVPELITVKGVFEVKKLLAHIRKGVEKIVTVIKEEPATAGSSTAVGGEEQ 68
          KGV S +++++ PELI V GVFEV+KL+AHIR+GV+KIVTVIK+E A  G S    GE+Q
Sbjct: 29 KGVQSVQVEEDSPELIRVTGVFEVQKLVAHIRRGVDKIVTVIKQENAAGGGSG--DGEQQ 88

Query: 69 REAAGEGSS 77
           E A  G S
Sbjct: 89 IEDAPTGGS 95

[Close]

BLAST of IVF0021714 vs. TAIR 10
Match: AT5G63530.1 (farnesylated protein 3 )

HSP 1 Score: 48.1 bits (113), Expect = 5.0e-06
Identity = 40/106 (37.74%), Postives = 61/106 (57.55%), Query Frame = 0


Query: 1   MKKCCQNMKGVISAEIDKEVPELITVKGVFEVKKLLAHIRKGVEKIVTVIKEE----PAT 60
           +KK    MKGV SAE D +  + +TVKGVFE +KL+ ++ K   K   ++K +    P  
Sbjct: 188 IKKRIMRMKGVESAESDLKSSQ-VTVKGVFEPQKLVEYVYKRTGKHAAIMKIDPPPPPPP 247

Query: 61  AGSSTAVGGEEQREAAGEGSSR---GANHEIEAEEEKEEEDDGDGE 100
             ++ A  GE++ E  GEG S+   G + + + +EEK+E D G GE
Sbjct: 248 EEAAAAAEGEKKEEEKGEGESKGEEGKDDKAKTDEEKKEGDGGKGE 292

[Close]

BLAST of IVF0021714 vs. TAIR 10
Match: AT5G63530.2 (farnesylated protein 3 )

HSP 1 Score: 48.1 bits (113), Expect = 5.0e-06
Identity = 40/106 (37.74%), Postives = 61/106 (57.55%), Query Frame = 0


Query: 1   MKKCCQNMKGVISAEIDKEVPELITVKGVFEVKKLLAHIRKGVEKIVTVIKEE----PAT 60
           +KK    MKGV SAE D +  + +TVKGVFE +KL+ ++ K   K   ++K +    P  
Sbjct: 173 IKKRIMRMKGVESAESDLKSSQ-VTVKGVFEPQKLVEYVYKRTGKHAAIMKIDPPPPPPP 232

Query: 61  AGSSTAVGGEEQREAAGEGSSR---GANHEIEAEEEKEEEDDGDGE 100
             ++ A  GE++ E  GEG S+   G + + + +EEK+E D G GE
Sbjct: 233 EEAAAAAEGEKKEEEKGEGESKGEEGKDDKAKTDEEKKEGDGGKGE 277

The following BLAST results are available for this feature:

BLAST of IVF0021714 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C5D3	7.0e-05	37.74	Heavy metal-associated isoprenylated plant protein 7 OS=Arabidopsis thaliana OX=...	[more]

BLAST of IVF0021714 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TE72	4.8e-41	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KDJ7	6.5e-30	78.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G094160 PE=4 SV=1	[more]
A0A6J1JHA3	1.7e-14	59.14	uncharacterized protein LOC111486994 OS=Cucurbita maxima OX=3661 GN=LOC111486994...	[more]

BLAST of IVF0021714 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039827.1	1.83e-55	100.00	hypothetical protein E6C27_scaffold122G001020 [Cucumis melo var. makuwa] >TYK246...	[more]
KAE8646758.1	6.02e-24	76.62	hypothetical protein Csa_005466 [Cucumis sativus]	[more]
XP_022989967.1	8.72e-22	68.00	uncharacterized protein LOC111486994 [Cucurbita maxima]	[more]
KAG6600923.1	9.87e-17	68.66	hypothetical protein SDJN03_06156, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6576124.1	3.03e-12	57.97	hypothetical protein SDJN03_26763, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of IVF0021714 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63530.1	5.0e-06	37.74	farnesylated protein 3	[more]
AT5G63530.2	5.0e-06	37.74	farnesylated protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0021714.2	IVF0021714.2	mRNA