IVF0021695 (gene) Melon (IVF77) v1

Overview
NameIVF0021695
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCell division protein ftsH
Locationchr03: 7199768 .. 7200164 (+)
RNA-Seq ExpressionIVF0021695
SyntenyIVF0021695
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCGGAGAAGTGAAAGACTTCTTGGATCAAGGACTAGGCCTATGAAATCAAACAAGGATGATCATATTCTGATAGATGACACAAAGGTATGTGTTATAGTTTATGTTGTAAATTTATGAAATTATACGATATATGGTATAAATGATTCACTAAGATATAATTTGTATATATTTCGTCGGATGAAGAGAGATATGAGGAGGAATCAAGCAACTACTACCACTACAGTCAGTATTCCCAAGAGATGAGAACTATGAATTAACAGGACCAAATGGAACACAAATTTTGGTGTACGAGGTAAAGAAAGATGTCAAACTAGATGTAGTTTTCGAAACACCAGAGACAAAAATGTCTATGCATGACCTAGAAGTATGTTCATTTGTGAGTATATATTAA

mRNA sequence

ATGGAGCGGAGAAGTGAAAGACTTCTTGGATCAAGGACTAGGCCTATGAAATCAAACAAGGATGATCATATTCTGATAGATGACACAAAGCAACTACTACCACTACAGTCAGTATTCCCAAGAGATGAGAACTATGAATTAACAGGACCAAATGGAACACAAATTTTGGTGTACGAGGTAAAGAAAGATGTCAAACTAGATGTAGTTTTCGAAACACCAGAGACAAAAATGTCTATGCATGACCTAGAAGTATGTTCATTTGTGAGTATATATTAA

Coding sequence (CDS)

ATGGAGCGGAGAAGTGAAAGACTTCTTGGATCAAGGACTAGGCCTATGAAATCAAACAAGGATGATCATATTCTGATAGATGACACAAAGCAACTACTACCACTACAGTCAGTATTCCCAAGAGATGAGAACTATGAATTAACAGGACCAAATGGAACACAAATTTTGGTGTACGAGGTAAAGAAAGATGTCAAACTAGATGTAGTTTTCGAAACACCAGAGACAAAAATGTCTATGCATGACCTAGAAGTATGTTCATTTGTGAGTATATATTAA

Protein sequence

MERRSERLLGSRTRPMKSNKDDHILIDDTKQLLPLQSVFPRDENYELTGPNGTQILVYEVKKDVKLDVVFETPETKMSMHDLEVCSFVSIY
Homology
BLAST of IVF0021695 vs. ExPASy TrEMBL
Match: A0A5A7VKG5 (Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold595G00090 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.9e-15
Identity = 48/81 (59.26%), Postives = 60/81 (74.07%), Query Frame = 0

Query: 1  MERRSERLLGSRTRPMKSNKDDHILIDDTKQLLPLQSVFPRDENYELTGPNGTQILVYEV 60
          M R+S R LGSR + MKSNKDD I+I+DT+      +V+  D+ YEL GP  TQI++YE 
Sbjct: 1  MVRKSGRCLGSRMKHMKSNKDDPIMINDTE---VCGTVYKGDDEYELRGPTCTQIMLYEE 60

Query: 61 KKDVKLDVVFETPETKMSMHD 82
          KK VK DVVFETP+TKM+MHD
Sbjct: 61 KKYVKPDVVFETPKTKMAMHD 78

BLAST of IVF0021695 vs. ExPASy TrEMBL
Match: A0A5D3E3X1 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold974G00070 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.4e-12
Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = 0

Query: 1  MERRSERLLGSRTRPMKSNKDDHILIDDTKQ----------LLPLQSVFPRDENYELTGP 60
          M RRSER LGSR + +KS+KD+ ILI+D  +            P+Q ++P+D+  EL GP
Sbjct: 1  MVRRSERCLGSRLKKIKSSKDNSILIEDNVEEDIRNEEPLDYQPIQIIYPKDDEEELQGP 60

Query: 61 NGTQILVYEVKKDVKLDVVFETPETKM 78
           GTQI+VY+ KK ++ D+VF+TPE KM
Sbjct: 61 TGTQIVVYDDKKFMRTDMVFKTPEAKM 87

BLAST of IVF0021695 vs. ExPASy TrEMBL
Match: A0A5A7TIM3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00690 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-10
Identity = 43/93 (46.24%), Postives = 57/93 (61.29%), Query Frame = 0

Query: 1  MERRSERLLGSRTRPMKSNKDDHILIDDTK----------QLLPLQSVFPRDENYELTGP 60
          M RRSER LG + + +KSNKDD I+I D            Q  PLQ+++  D+  EL GP
Sbjct: 1  MVRRSERCLGLQLKIIKSNKDDPIVIKDNTEEEVRYEEPIQYEPLQTIYLDDDEQELRGP 60

Query: 61 NGTQILVYEVKKDVKLDVVFETPETKMSMHDLE 84
            T I+VY+ +K VK +VVFETP+ KM  H+ E
Sbjct: 61 TDTLIVVYQNQKFVKTNVVFETPKAKMPKHNKE 93

BLAST of IVF0021695 vs. ExPASy TrEMBL
Match: A0A5D3E406 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00510 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.4e-10
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 0

Query: 19  NKDDHILIDDTKQLLPLQSVFPRDENYELTGPNGTQILVYEVKKDVKLDVVFETPETKMS 78
           N+ D    ++     PLQ+V+P D  +EL GP GTQI++YE KK VK DVVFETPETKM 
Sbjct: 142 NRADEERYEEAINYEPLQAVYPNDGEHELRGPTGTQIVLYEEKKYVKPDVVFETPETKMP 201

Query: 79  MHD 82
            HD
Sbjct: 202 THD 204

BLAST of IVF0021695 vs. ExPASy TrEMBL
Match: A0A5A7SWP5 (Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G003940 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.9e-09
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 0

Query: 34 PLQSVFPRDENYELTGPNGTQILVYEVKKDVKLDVVFETPETKMSMHD 82
          PLQ+V+P D  +EL GP GTQI++YE KK VK DVVFETPETKM  HD
Sbjct: 19 PLQAVYPNDGEHELRGPTGTQIVLYEEKKYVKPDVVFETPETKMPTHD 66

BLAST of IVF0021695 vs. NCBI nr
Match: KAA0066916.1 (Cell division protein ftsH [Cucumis melo var. makuwa] >TYK30198.1 Cell division protein ftsH [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 1.65e-20
Identity = 48/81 (59.26%), Postives = 60/81 (74.07%), Query Frame = 0

Query: 1  MERRSERLLGSRTRPMKSNKDDHILIDDTKQLLPLQSVFPRDENYELTGPNGTQILVYEV 60
          M R+S R LGSR + MKSNKDD I+I+DT+      +V+  D+ YEL GP  TQI++YE 
Sbjct: 1  MVRKSGRCLGSRMKHMKSNKDDPIMINDTEVC---GTVYKGDDEYELRGPTCTQIMLYEE 60

Query: 61 KKDVKLDVVFETPETKMSMHD 81
          KK VK DVVFETP+TKM+MHD
Sbjct: 61 KKYVKPDVVFETPKTKMAMHD 78

BLAST of IVF0021695 vs. NCBI nr
Match: TYK30586.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 7.50e-16
Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = 0

Query: 1  MERRSERLLGSRTRPMKSNKDDHILIDDTKQ----------LLPLQSVFPRDENYELTGP 60
          M RRSER LGSR + +KS+KD+ ILI+D  +            P+Q ++P+D+  EL GP
Sbjct: 1  MVRRSERCLGSRLKKIKSSKDNSILIEDNVEEDIRNEEPLDYQPIQIIYPKDDEEELQGP 60

Query: 61 NGTQILVYEVKKDVKLDVVFETPETKM 77
           GTQI+VY+ KK ++ D+VF+TPE KM
Sbjct: 61 TGTQIVVYDDKKFMRTDMVFKTPEAKM 87

BLAST of IVF0021695 vs. NCBI nr
Match: KAA0043162.1 (uncharacterized protein E6C27_scaffold110G00260 [Cucumis melo var. makuwa] >TYK12303.1 uncharacterized protein E5676_scaffold302G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 1.12e-14
Identity = 43/93 (46.24%), Postives = 57/93 (61.29%), Query Frame = 0

Query: 1  MERRSERLLGSRTRPMKSNKDDHILIDDTK----------QLLPLQSVFPRDENYELTGP 60
          M RRSER LG + + +KSNKDD I+I D            Q  PLQ+++  D+  EL GP
Sbjct: 1  MVRRSERCLGLQLKIIKSNKDDPIVIKDNTEEEVRYEEPIQYEPLQTIYLDDDEQELRGP 60

Query: 61 NGTQILVYEVKKDVKLDVVFETPETKMSMHDLE 83
            T I+VY+ +K VK +VVFETP+ KM  H+ E
Sbjct: 61 TDTLIVVYQNQKFVKTNVVFETPKAKMPKHNKE 93

BLAST of IVF0021695 vs. NCBI nr
Match: TYK30853.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 4.74e-13
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 0

Query: 19  NKDDHILIDDTKQLLPLQSVFPRDENYELTGPNGTQILVYEVKKDVKLDVVFETPETKMS 78
           N+ D    ++     PLQ+V+P D  +EL GP GTQI++YE KK VK DVVFETPETKM 
Sbjct: 142 NRADEERYEEAINYEPLQAVYPNDGEHELRGPTGTQIVLYEEKKYVKPDVVFETPETKMP 201

Query: 79  MHD 81
            HD
Sbjct: 202 THD 204

BLAST of IVF0021695 vs. NCBI nr
Match: KAA0035692.1 (Cell division protein ftsH [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 4.95e-13
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 0

Query: 34 PLQSVFPRDENYELTGPNGTQILVYEVKKDVKLDVVFETPETKMSMHD 81
          PLQ+V+P D  +EL GP GTQI++YE KK VK DVVFETPETKM  HD
Sbjct: 19 PLQAVYPNDGEHELRGPTGTQIVLYEEKKYVKPDVVFETPETKMPTHD 66

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VKG53.9e-1559.26Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A5D3E3X11.4e-1248.28Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold974G00... [more]
A0A5A7TIM31.7e-1046.24Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3E4068.4e-1055.56Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SWP51.9e-0968.75Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff... [more]
Match NameE-valueIdentityDescription
KAA0066916.11.65e-2059.26Cell division protein ftsH [Cucumis melo var. makuwa] >TYK30198.1 Cell division ... [more]
TYK30586.17.50e-1648.28protein Ycf2-like [Cucumis melo var. makuwa][more]
KAA0043162.11.12e-1446.24uncharacterized protein E6C27_scaffold110G00260 [Cucumis melo var. makuwa] >TYK1... [more]
TYK30853.14.74e-1355.56retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0035692.14.95e-1368.75Cell division protein ftsH [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0021695.1IVF0021695.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051301 cell division