IVF0021666 (gene) Melon (IVF77) v1

Overview
NameIVF0021666
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr11: 20993242 .. 20993457 (+)
RNA-Seq ExpressionIVF0021666
SyntenyIVF0021666
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTACTTCACAGAACGATGCTTGTCTGGAGTCTGACACCTCGTAGTACTTTTTGATAGAAATCAACCAAGAGAAGATGGACTCGACTGCGCTGCAATGAAGATGATCATCATGTGTGCCGCATTGAAAAGGATGATCGTCTGTACCGTATTAAAGATGATGATCATCTACATCGCATTGAAAATGATGATCGCCTGGACTGCGCCGCATTGA

mRNA sequence

ATGGTTTACTTCACAGAACGATGCTTAAATCAACCAAGAGAAGATGGACTCGACTGCGCTGCAATGAAGATGATCATCATGTGTGCCGCATTGAAAAGGATGATCGTCTGTACCGTATTAAAGATGATGATCATCTACATCGCATTGAAAATGATGATCGCCTGGACTGCGCCGCATTGA

Coding sequence (CDS)

ATGGTTTACTTCACAGAACGATGCTTAAATCAACCAAGAGAAGATGGACTCGACTGCGCTGCAATGAAGATGATCATCATGTGTGCCGCATTGAAAAGGATGATCGTCTGTACCGTATTAAAGATGATGATCATCTACATCGCATTGAAAATGATGATCGCCTGGACTGCGCCGCATTGA

Protein sequence

MVYFTERCLNQPREDGLDCAAMKMIIMCAALKRMIVCTVLKMMIIYIALKMMIAWTAPH
Homology
BLAST of IVF0021666 vs. ExPASy TrEMBL
Match: A0A5D3BRM4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold128G00250 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.6e-07
Identity = 35/56 (62.50%), Postives = 38/56 (67.86%), Query Frame = 0

Query: 1   MVYFTERCL------------NQPREDGLDCAAMKMIIMCAALKRMIVCTVLKMMI 45
           MVYFTERCL            NQPREDGLDCAA+K+ I C ALK +IVC  LKMMI
Sbjct: 60  MVYFTERCLSGVRHLVVLSDRNQPREDGLDCAALKIKIDCVALKMIIVCAALKMMI 115

BLAST of IVF0021666 vs. ExPASy TrEMBL
Match: A0A5D3BR16 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1371G00600 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.0e-05
Identity = 34/58 (58.62%), Postives = 39/58 (67.24%), Query Frame = 0

Query: 1  MVYFTERCL------------NQPREDGLDCAAM-KMIIMCAALKRMIVCTVLKMMII 46
          MVYFT++CL            NQPREDG DCAA+ KM I CAALK +IVCT LK MI+
Sbjct: 22 MVYFTKQCLSGVRHLTVLSDRNQPREDGFDCAALIKMKIDCAALKMIIVCTTLKRMIV 79

BLAST of IVF0021666 vs. NCBI nr
Match: TYK01658.1 (hypothetical protein E5676_scaffold128G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 2.70e-10
Identity = 35/56 (62.50%), Postives = 38/56 (67.86%), Query Frame = 0

Query: 1   MVYFTERCL------------NQPREDGLDCAAMKMIIMCAALKRMIVCTVLKMMI 44
           MVYFTERCL            NQPREDGLDCAA+K+ I C ALK +IVC  LKMMI
Sbjct: 60  MVYFTERCLSGVRHLVVLSDRNQPREDGLDCAALKIKIDCVALKMIIVCAALKMMI 115

BLAST of IVF0021666 vs. NCBI nr
Match: KAA0052092.1 (hypothetical protein E6C27_scaffold578G00740 [Cucumis melo var. makuwa] >TYK00706.1 hypothetical protein E5676_scaffold1371G00600 [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 2.28e-08
Identity = 34/58 (58.62%), Postives = 39/58 (67.24%), Query Frame = 0

Query: 1  MVYFTERCL------------NQPREDGLDCAAM-KMIIMCAALKRMIVCTVLKMMII 45
          MVYFT++CL            NQPREDG DCAA+ KM I CAALK +IVCT LK MI+
Sbjct: 22 MVYFTKQCLSGVRHLTVLSDRNQPREDGFDCAALIKMKIDCAALKMIIVCTTLKRMIV 79

BLAST of IVF0021666 vs. NCBI nr
Match: KAA0050427.1 (uncharacterized protein E6C27_scaffold175G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 49.3 bits (116), Expect = 1.23e-05
Identity = 34/71 (47.89%), Postives = 36/71 (50.70%), Query Frame = 0

Query: 1  MVYFTERCL------------NQPREDGLDCAAMKMIIMCAALKRMIVCTVLKMMIIYIA 59
          MVYFTER L            NQ +EDGLDC  +KM I C ALK  I C  LKM      
Sbjct: 35 MVYFTERFLSGVQHLVVSFDRNQLKEDGLDCTTLKMKINCTALKMKIDCAALKM------ 94

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BRM45.6e-0762.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BR164.0e-0558.62Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
TYK01658.12.70e-1062.50hypothetical protein E5676_scaffold128G00250 [Cucumis melo var. makuwa][more]
KAA0052092.12.28e-0858.62hypothetical protein E6C27_scaffold578G00740 [Cucumis melo var. makuwa] >TYK0070... [more]
KAA0050427.11.23e-0547.89uncharacterized protein E6C27_scaffold175G00150 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0021666.1IVF0021666.1mRNA