IVF0021653 (gene) Melon (IVF77) v1

Overview
NameIVF0021653
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTranscription factor HBP-1b(C38)-like
Locationchr05: 20147434 .. 20147754 (+)
RNA-Seq ExpressionIVF0021653
SyntenyIVF0021653
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGTACTCCCGATGCACAGAAACGTCGAGGAAAGTGAAAAAAACATCAAGAAAGGATATGCCAACGTTTTTCACGGCATCGGAAATAACGTCGGAAGAAATGAGTGGGAAGAGGCATTCCCGACGCCGTACCAACATAACGTCGAGAATGCCTCTCCCGACGCCATGACATGCGTCGGGAATGCCTCTCTCGACGCTGTGACATGCGTCGGCCAAAGTGGCGTCGAGAGTTCCTCTCCCGACGGACCTTATACCGACGCATCACGCAGCGTCGGGAATTCCTTTTTATATATATTTTTTAAAATATGTAATTTCTAA

mRNA sequence

ATGGGGGTACTCCCGATGCACAGAAACGTCGAGGAAAGTGAAAAAAACATCAAGAAAGGATATGCCAACGTTTTTCACGGCATCGGAAATAACGTCGGAAGAAATGAGTGGGAAGAGGCATTCCCGACGCCGTACCAACATAACGTCGAGAATGCCTCTCCCGACGCCATGACATGCGTCGGGAATGCCTCTCTCGACGCTGTGACATGCGTCGGCCAAAGTGGCGTCGAGAGTTCCTCTCCCGACGGACCTTATACCGACGCATCACGCAGCGTCGGGAATTCCTTTTTATATATATTTTTTAAAATATGTAATTTCTAA

Coding sequence (CDS)

ATGGGGGTACTCCCGATGCACAGAAACGTCGAGGAAAGTGAAAAAAACATCAAGAAAGGATATGCCAACGTTTTTCACGGCATCGGAAATAACGTCGGAAGAAATGAGTGGGAAGAGGCATTCCCGACGCCGTACCAACATAACGTCGAGAATGCCTCTCCCGACGCCATGACATGCGTCGGGAATGCCTCTCTCGACGCTGTGACATGCGTCGGCCAAAGTGGCGTCGAGAGTTCCTCTCCCGACGGACCTTATACCGACGCATCACGCAGCGTCGGGAATTCCTTTTTATATATATTTTTTAAAATATGTAATTTCTAA

Protein sequence

MGVLPMHRNVEESEKNIKKGYANVFHGIGNNVGRNEWEEAFPTPYQHNVENASPDAMTCVGNASLDAVTCVGQSGVESSSPDGPYTDASRSVGNSFLYIFFKICNF
Homology
BLAST of IVF0021653 vs. ExPASy TrEMBL
Match: A0A5D3BDL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold23G00130 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 2.6e-55
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0

Query: 1   MGVLPMHRNVEESEKNIKKGYANVFHGIGNNVGRNEWEEAFPTPYQHNVENASPDAMTCV 60
           MGVLPMHRNVEESEKNIKKGYANVFHGIGNNVGRNEWEEAFPTPYQHNVENASPDAMTCV
Sbjct: 1   MGVLPMHRNVEESEKNIKKGYANVFHGIGNNVGRNEWEEAFPTPYQHNVENASPDAMTCV 60

Query: 61  GNASLDAVTCVGQSGVESSSPDGPYTDASRSVGNSFLYIFFKICNF 107
           GNASLDAVTCVGQSGVESSSPDGPYTDASRSVGNSFLYIFFKICNF
Sbjct: 61  GNASLDAVTCVGQSGVESSSPDGPYTDASRSVGNSFLYIFFKICNF 106

BLAST of IVF0021653 vs. ExPASy TrEMBL
Match: A0A5A7TUB6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold466G00040 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.2e-21
Identity = 55/87 (63.22%), Postives = 62/87 (71.26%), Query Frame = 0

Query: 2   GVLPMHRNVEESEKNIKKGYANVFHGIGNNVGRNEWEEAFPTPYQHNVENASPDAMTCVG 61
           G+LP H+NV +SEKN++KGY +VFH +GNNV RNE  EAFP  YQH V NASP       
Sbjct: 82  GILPTHKNVGKSEKNVEKGYVDVFHDVGNNVERNESGEAFPMAYQHGVGNASP------- 141

Query: 62  NASLDAVTCVGQSGVESSSPDGPYTDA 89
               D VTCVGQSGV SSSPDGPY DA
Sbjct: 142 ----DVVTCVGQSGVGSSSPDGPYVDA 157

BLAST of IVF0021653 vs. ExPASy TrEMBL
Match: A0A5A7V4R7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003530 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 9.4e-21
Identity = 55/83 (66.27%), Postives = 61/83 (73.49%), Query Frame = 0

Query: 6  MHRNVEESEKNIKKGYANVFHGIGNNVGRNEWEEAFPTPYQHNVENASPDAMTCVGNASL 65
          MH+NV ESEKN++KGY +VFHG+ NNVGRNE  EAF TPYQH+VENASP           
Sbjct: 1  MHKNVGESEKNVRKGYVDVFHGVRNNVGRNESGEAFSTPYQHSVENASP----------- 60

Query: 66 DAVTCVGQSGVESSSPDGPYTDA 89
          DAVTCV QSGV  SSPD PY DA
Sbjct: 61 DAVTCVNQSGVGRSSPDRPYADA 72

BLAST of IVF0021653 vs. ExPASy TrEMBL
Match: A0A5D3CS24 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold692G00590 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.0e-19
Identity = 54/87 (62.07%), Postives = 61/87 (70.11%), Query Frame = 0

Query: 2   GVLPMHRNVEESEKNIKKGYANVFHGIGNNVGRNEWEEAFPTPYQHNVENASPDAMTCVG 61
           G+LP H+NV +SEKN+ KGYA+VFHG+ NNV RNE EEAF TPYQ  VE+ASP       
Sbjct: 38  GILPTHKNVGKSEKNVGKGYADVFHGVRNNVVRNELEEAFSTPYQQGVEHASP------- 97

Query: 62  NASLDAVTCVGQSGVESSSPDGPYTDA 89
                 VTCVGQ GV SSSPD PY DA
Sbjct: 98  ----KVVTCVGQRGVGSSSPDRPYADA 113

BLAST of IVF0021653 vs. ExPASy TrEMBL
Match: A0A5A7TPM2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001190 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.0e-19
Identity = 55/96 (57.29%), Postives = 63/96 (65.62%), Query Frame = 0

Query: 2   GVLPMHRNVEESEKNIKKGYANVFHGIGNNVGRNEWEEAFPTPYQHNVENASPDAMTCVG 61
           GV+P H+NV ESEK + KGYA+VFH +GNNVGRNE  E FPT YQH V  ASP       
Sbjct: 154 GVIPTHKNVGESEKYVGKGYADVFHDVGNNVGRNESGEVFPTSYQHGVRTASP------- 213

Query: 62  NASLDAVTCVGQSGVESSSPDGPYTDASRSVGNSFL 98
               DAVTCV  SGV SSS +GPY DA   V  +F+
Sbjct: 214 ----DAVTCVDHSGVGSSSSNGPYADARYGVAFAFV 238

BLAST of IVF0021653 vs. NCBI nr
Match: TYJ97086.1 (hypothetical protein E5676_scaffold23G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 223 bits (569), Expect = 1.10e-73
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0

Query: 1   MGVLPMHRNVEESEKNIKKGYANVFHGIGNNVGRNEWEEAFPTPYQHNVENASPDAMTCV 60
           MGVLPMHRNVEESEKNIKKGYANVFHGIGNNVGRNEWEEAFPTPYQHNVENASPDAMTCV
Sbjct: 1   MGVLPMHRNVEESEKNIKKGYANVFHGIGNNVGRNEWEEAFPTPYQHNVENASPDAMTCV 60

Query: 61  GNASLDAVTCVGQSGVESSSPDGPYTDASRSVGNSFLYIFFKICNF 106
           GNASLDAVTCVGQSGVESSSPDGPYTDASRSVGNSFLYIFFKICNF
Sbjct: 61  GNASLDAVTCVGQSGVESSSPDGPYTDASRSVGNSFLYIFFKICNF 106

BLAST of IVF0021653 vs. NCBI nr
Match: KAA0062294.1 (hypothetical protein E6C27_scaffold154G00350 [Cucumis melo var. makuwa] >TYK26692.1 hypothetical protein E5676_scaffold313G003530 [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (270), Expect = 1.56e-28
Identity = 55/83 (66.27%), Postives = 61/83 (73.49%), Query Frame = 0

Query: 6  MHRNVEESEKNIKKGYANVFHGIGNNVGRNEWEEAFPTPYQHNVENASPDAMTCVGNASL 65
          MH+NV ESEKN++KGY +VFHG+ NNVGRNE  EAF TPYQH+VENASPDA         
Sbjct: 1  MHKNVGESEKNVRKGYVDVFHGVRNNVGRNESGEAFSTPYQHSVENASPDA--------- 60

Query: 66 DAVTCVGQSGVESSSPDGPYTDA 88
            VTCV QSGV  SSPD PY DA
Sbjct: 61 --VTCVNQSGVGRSSPDRPYADA 72

BLAST of IVF0021653 vs. NCBI nr
Match: KAA0047052.1 (hypothetical protein E6C27_scaffold466G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (273), Expect = 6.13e-28
Identity = 55/87 (63.22%), Postives = 62/87 (71.26%), Query Frame = 0

Query: 2   GVLPMHRNVEESEKNIKKGYANVFHGIGNNVGRNEWEEAFPTPYQHNVENASPDAMTCVG 61
           G+LP H+NV +SEKN++KGY +VFH +GNNV RNE  EAFP  YQH V NASPD      
Sbjct: 82  GILPTHKNVGKSEKNVEKGYVDVFHDVGNNVERNESGEAFPMAYQHGVGNASPDV----- 141

Query: 62  NASLDAVTCVGQSGVESSSPDGPYTDA 88
                 VTCVGQSGV SSSPDGPY DA
Sbjct: 142 ------VTCVGQSGVGSSSPDGPYVDA 157

BLAST of IVF0021653 vs. NCBI nr
Match: KAA0061372.1 (hypothetical protein E6C27_scaffold749G00580 [Cucumis melo var. makuwa] >TYK14727.1 hypothetical protein E5676_scaffold692G00590 [Cucumis melo var. makuwa])

HSP 1 Score: 104 bits (260), Expect = 1.66e-26
Identity = 54/87 (62.07%), Postives = 61/87 (70.11%), Query Frame = 0

Query: 2   GVLPMHRNVEESEKNIKKGYANVFHGIGNNVGRNEWEEAFPTPYQHNVENASPDAMTCVG 61
           G+LP H+NV +SEKN+ KGYA+VFHG+ NNV RNE EEAF TPYQ  VE+ASP       
Sbjct: 38  GILPTHKNVGKSEKNVGKGYADVFHGVRNNVVRNELEEAFSTPYQQGVEHASPKV----- 97

Query: 62  NASLDAVTCVGQSGVESSSPDGPYTDA 88
                 VTCVGQ GV SSSPD PY DA
Sbjct: 98  ------VTCVGQRGVGSSSPDRPYADA 113

BLAST of IVF0021653 vs. NCBI nr
Match: KAA0045130.1 (hypothetical protein E6C27_scaffold30G001290 [Cucumis melo var. makuwa] >TYK23607.1 hypothetical protein E5676_scaffold500G001190 [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (262), Expect = 3.29e-25
Identity = 55/96 (57.29%), Postives = 63/96 (65.62%), Query Frame = 0

Query: 2   GVLPMHRNVEESEKNIKKGYANVFHGIGNNVGRNEWEEAFPTPYQHNVENASPDAMTCVG 61
           GV+P H+NV ESEK + KGYA+VFH +GNNVGRNE  E FPT YQH V  ASPDA     
Sbjct: 154 GVIPTHKNVGESEKYVGKGYADVFHDVGNNVGRNESGEVFPTSYQHGVRTASPDA----- 213

Query: 62  NASLDAVTCVGQSGVESSSPDGPYTDASRSVGNSFL 97
                 VTCV  SGV SSS +GPY DA   V  +F+
Sbjct: 214 ------VTCVDHSGVGSSSSNGPYADARYGVAFAFV 238

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BDL72.6e-55100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TUB63.2e-2163.22Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7V4R79.4e-2166.27Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CS241.0e-1962.07Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TPM21.0e-1957.29Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
TYJ97086.11.10e-73100.00hypothetical protein E5676_scaffold23G00130 [Cucumis melo var. makuwa][more]
KAA0062294.11.56e-2866.27hypothetical protein E6C27_scaffold154G00350 [Cucumis melo var. makuwa] >TYK2669... [more]
KAA0047052.16.13e-2863.22hypothetical protein E6C27_scaffold466G00040 [Cucumis melo var. makuwa][more]
KAA0061372.11.66e-2662.07hypothetical protein E6C27_scaffold749G00580 [Cucumis melo var. makuwa] >TYK1472... [more]
KAA0045130.13.29e-2557.29hypothetical protein E6C27_scaffold30G001290 [Cucumis melo var. makuwa] >TYK2360... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0021653.1IVF0021653.1mRNA