IVF0021575 (gene) Melon (IVF77) v1

Overview


Name	IVF0021575
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr01: 12145629 .. 12145874 (-)
RNA-Seq Expression	IVF0021575
Synteny	IVF0021575

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGAAAGAAATTGCAGCGAAAAAAAGAAGAGGAAAAGTAGAAAGACGATGGAAAGAAATCGAAGCGAAAAAATGATGGAAAGATTAAACGACATAAATAAAGAATTGAAAAATAAGAAAGATGATGAAAAGAAATCACATAAAAGAAAAAGAGAAAAAAAGAAAGACGAAATCGCAGGGGAAGACGGGGAAGACGAAATAACAGGAGAAAGACGAATCGCGAGGAAGAAAAGAAAGATGTAA

mRNA sequence

ATGATGGAAAGAAATTGCAGCGAAAAAAAGAAGAGGAAAAGTAGAAAGACGATGGAAAGAAATCGAAGCGAAAAAATGATGGAAAGATTAAACGACATAAATAAAGAATTGAAAAATAAGAAAGATGATGAAAAGAAATCACATAAAAGAAAAAGAGAAAAAAAGAAAGACGAAATCGCAGGGGAAGACGGGGAAGACGAAATAACAGGAGAAAGACGAATCGCGAGGAAGAAAAGAAAGATGTAA

Coding sequence (CDS)

ATGATGGAAAGAAATTGCAGCGAAAAAAAGAAGAGGAAAAGTAGAAAGACGATGGAAAGAAATCGAAGCGAAAAAATGATGGAAAGATTAAACGACATAAATAAAGAATTGAAAAATAAGAAAGATGATGAAAAGAAATCACATAAAAGAAAAAGAGAAAAAAAGAAAGACGAAATCGCAGGGGAAGACGGGGAAGACGAAATAACAGGAGAAAGACGAATCGCGAGGAAGAAAAGAAAGATGTAA

Protein sequence

MMERNCSEKKKRKSRKTMERNRSEKMMERLNDINKELKNKKDDEKKSHKRKREKKKDEIAGEDGEDEITGERRIARKKRKM

Homology

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BLAST of IVF0021575 vs. NCBI nr
Match: KAA0033511.1 (hypothetical protein E6C27_scaffold261G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 47.4 bits (111), Expect = 8.58e-04
Identity = 26/35 (74.29%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 47 SHKRKREKKKDEIAGEDGEDEITGERRIARKKRKM 81
          + K+++E KKDEIAGEDG+DEITG RRIARK RKM
Sbjct: 5  NRKKEKENKKDEIAGEDGKDEITGGRRIARKNRKM 39

The following BLAST results are available for this feature:

BLAST of IVF0021575 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0021575 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0021575 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033511.1	8.58e-04	74.29	hypothetical protein E6C27_scaffold261G00530 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0021575 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 20..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0021575.2	IVF0021575.2	mRNA