IVF0021561 (gene) Melon (IVF77) v1

Overview


Name	IVF0021561
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr03: 19390695 .. 19391423 (-)
RNA-Seq Expression	IVF0021561
Synteny	IVF0021561

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGCAGTCCAAGTTGTTAGAGTTGAAAGACAAACAAGACATTGATTCTCTCAGAGCTTCACAAAAAAACATGAAACCTTTGATCTCCAAATCATTGTTAGTTCCAATTCTCCACACTTTTCTACTTCTGATCTTTTCTTTCCATCTTCACACTCCTACTCAAGCTGCAAGAATGCTCTTCCCTTTCCCAGGTTCTCATGTTGCTTTTACGTCGTTACCGTTATCGTTATCATCATCGCCGTCGTATCAAGTTGATTTTCTTCTTCATCATCTTCCATCTGCTGCTCGGAAGCTCGGCGAAACCTCATCGTCTACTTCCACAAGCCTTCGCCGAATACCTCGTAGTGGCCCCAATCCCACACAGAACAGGTAATGATTTTGAATCCTAGTTGGTTTTTTGTTTTGTTAATGTTAAAGTTTTAACTCATGGAGTTCTCTCTGTCCGTCTCTTATTTTGGTTTTGAAAACAGAATGAAGCCCAAGTTGAGAAGCTAAATCTTAAAGGGATCAAAGAAACAGATGTTCAAAGGAATCTCAAAGCCAATCAGTATTCTAGTTTTTTCTTTTCTTTTCTTCTTTTTTTTTTTATACTAAGGAAAAAAATTCATAGCAATAGAAATACATTAGAAAACTCACTGTTACATACATGGTTTGATTAGAATGTTGTTTCTTTAAACAATTTCTTGTGTATGTGTAGATTTTTCAATGTTAATAAACTTCTACCATATTG

mRNA sequence

AGGCAGTCCAAGTTGTTAGAGTTGAAAGACAAACAAGACATTGATTCTCTCAGAGCTTCACAAAAAAACATGAAACCTTTGATCTCCAAATCATTGTTAGTTCCAATTCTCCACACTTTTCTACTTCTGATCTTTTCTTTCCATCTTCACACTCCTACTCAAGCTGCAAGAATGCTCTTCCCTTTCCCAGGTTCTCATGTTGCTTTTACGTCGTTACCGTTATCGTTATCATCATCGCCGTCGTATCAAGTTGATTTTCTTCTTCATCATCTTCCATCTGCTGCTCGGAAGCTCGGCGAAACCTCATCGTCTACTTCCACAAGCCTTCGCCGAATACCTCGTAGTGGCCCCAATCCCACACAGAACAGAATGAAGCCCAAGTTGAGAAGCTAAATCTTAAAGGGATCAAAGAAACAGATGTTCAAAGGAATCTCAAAGCCAATCAGTATTCTAGTTTTTTCTTTTCTTTTCTTCTTTTTTTTTTTATACTAAGGAAAAAAATTCATAGCAATAGAAATACATTAGAAAACTCACTGTTACATACATGGTTTGATTAGAATGTTGTTTCTTTAAACAATTTCTTGTGTATGTGTAGATTTTTCAATGTTAATAAACTTCTACCATATTG

Coding sequence (CDS)

ATGAAACCTTTGATCTCCAAATCATTGTTAGTTCCAATTCTCCACACTTTTCTACTTCTGATCTTTTCTTTCCATCTTCACACTCCTACTCAAGCTGCAAGAATGCTCTTCCCTTTCCCAGGTTCTCATGTTGCTTTTACGTCGTTACCGTTATCGTTATCATCATCGCCGTCGTATCAAGTTGATTTTCTTCTTCATCATCTTCCATCTGCTGCTCGGAAGCTCGGCGAAACCTCATCGTCTACTTCCACAAGCCTTCGCCGAATACCTCGTAGTGGCCCCAATCCCACACAGAACAGAATGAAGCCCAAGTTGAGAAGCTAA

Protein sequence

MKPLISKSLLVPILHTFLLLIFSFHLHTPTQAARMLFPFPGSHVAFTSLPLSLSSSPSYQVDFLLHHLPSAARKLGETSSSTSTSLRRIPRSGPNPTQNRMKPKLRS

Homology

[Close]

BLAST of IVF0021561 vs. ExPASy TrEMBL
Match: A0A5D3C1X0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00120 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 2.8e-49
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MKPLISKSLLVPILHTFLLLIFSFHLHTPTQAARMLFPFPGSHVAFTSLPLSLSSSPSYQ 60
           MKPLISKSLLVPILHTFLLLIFSFHLHTPTQAARMLFPFPGSHVAFTSLPLSLSSSPSYQ
Sbjct: 1   MKPLISKSLLVPILHTFLLLIFSFHLHTPTQAARMLFPFPGSHVAFTSLPLSLSSSPSYQ 60

Query: 61  VDFLLHHLPSAARKLGETSSSTSTSLRRIPRSGPNPTQNRMKPKLRS 108
           VDFLLHHLPSAARKLGETSSSTSTSLRRIPRSGPNPTQNRMKPKLRS
Sbjct: 61  VDFLLHHLPSAARKLGETSSSTSTSLRRIPRSGPNPTQNRMKPKLRS 107

[Close]

BLAST of IVF0021561 vs. ExPASy TrEMBL
Match: A0A5A7SNV6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G004800 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.9e-45
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MKPLISKSLLVPILHTFLLLIFSFHLHTPTQAARMLFPFPGSHVAFTSLPLSLSSSPSYQ 60
           MKPLISKSLLVPILHTFLLLIFSFHLHTPTQAARMLFPFPGSHVAFTSLPLSLSSSPSYQ
Sbjct: 1   MKPLISKSLLVPILHTFLLLIFSFHLHTPTQAARMLFPFPGSHVAFTSLPLSLSSSPSYQ 60

Query: 61  VDFLLHHLPSAARKLGETSSSTSTSLRRIPRSGPNPTQNR 101
           VDFLLHHLPSAARKLGETSSSTSTSLRRIPRSGPNPTQNR
Sbjct: 61  VDFLLHHLPSAARKLGETSSSTSTSLRRIPRSGPNPTQNR 100

[Close]

BLAST of IVF0021561 vs. NCBI nr
Match: TYK04416.1 (uncharacterized protein E5676_scaffold409G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 204 bits (519), Expect = 5.03e-66
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MKPLISKSLLVPILHTFLLLIFSFHLHTPTQAARMLFPFPGSHVAFTSLPLSLSSSPSYQ 60
           MKPLISKSLLVPILHTFLLLIFSFHLHTPTQAARMLFPFPGSHVAFTSLPLSLSSSPSYQ
Sbjct: 1   MKPLISKSLLVPILHTFLLLIFSFHLHTPTQAARMLFPFPGSHVAFTSLPLSLSSSPSYQ 60

Query: 61  VDFLLHHLPSAARKLGETSSSTSTSLRRIPRSGPNPTQNRMKPKLRS 107
           VDFLLHHLPSAARKLGETSSSTSTSLRRIPRSGPNPTQNRMKPKLRS
Sbjct: 61  VDFLLHHLPSAARKLGETSSSTSTSLRRIPRSGPNPTQNRMKPKLRS 107

[Close]

BLAST of IVF0021561 vs. NCBI nr
Match: KAA0031696.1 (uncharacterized protein E6C27_scaffold139G004800 [Cucumis melo var. makuwa])

HSP 1 Score: 192 bits (487), Expect = 3.07e-61
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MKPLISKSLLVPILHTFLLLIFSFHLHTPTQAARMLFPFPGSHVAFTSLPLSLSSSPSYQ 60
           MKPLISKSLLVPILHTFLLLIFSFHLHTPTQAARMLFPFPGSHVAFTSLPLSLSSSPSYQ
Sbjct: 1   MKPLISKSLLVPILHTFLLLIFSFHLHTPTQAARMLFPFPGSHVAFTSLPLSLSSSPSYQ 60

Query: 61  VDFLLHHLPSAARKLGETSSSTSTSLRRIPRSGPNPTQNR 100
           VDFLLHHLPSAARKLGETSSSTSTSLRRIPRSGPNPTQNR
Sbjct: 61  VDFLLHHLPSAARKLGETSSSTSTSLRRIPRSGPNPTQNR 100

[Close]

BLAST of IVF0021561 vs. NCBI nr
Match: XP_011656590.1 (uncharacterized protein LOC105435754 [Cucumis sativus] >KAE8646645.1 hypothetical protein Csa_005020 [Cucumis sativus])

HSP 1 Score: 179 bits (455), Expect = 1.08e-55
Identity = 101/109 (92.66%), Postives = 102/109 (93.58%), Query Frame = 0


Query: 1   MKPLISKSLLVPILHTFLLLIFSFHLHTPTQAARMLFPFPGSHVAFTSLPL--SLSSSPS 60
           MKPLISKSLLVPIL+TFLLLIFSFHLHTPTQAARML PFPGSHVA TSLPL  SLSSS S
Sbjct: 41  MKPLISKSLLVPILYTFLLLIFSFHLHTPTQAARMLLPFPGSHVASTSLPLPLSLSSSSS 100

Query: 61  YQVDFLLHHLPSAARKLGETSSSTSTSLRRIPRSGPNPTQNRMKPKLRS 107
           YQVD LLHHLP AARKLGETSSSTSTSLRRIPRSGPNPTQNRMKPKLRS
Sbjct: 101 YQVD-LLHHLPPAARKLGETSSSTSTSLRRIPRSGPNPTQNRMKPKLRS 148

[Close]

BLAST of IVF0021561 vs. NCBI nr
Match: KAG7016372.1 (hypothetical protein SDJN02_21480, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 104 bits (260), Expect = 1.00e-26
Identity = 73/107 (68.22%), Postives = 80/107 (74.77%), Query Frame = 0


Query: 1   MKPLISKSLLVPILHTFLLLIFSFHLHTPTQAARMLFPFPGSHVAFTSLPLSLSSSPSYQ 60
           MKPLI KSL VPIL +FLL+ F   L TPTQAAR+L P P   VA TS      SS  YQ
Sbjct: 1   MKPLICKSL-VPILCSFLLMSF---LPTPTQAARLLLPVP--RVASTS------SSSLYQ 60

Query: 61  VDFLLHHLPSAARKLGETSSSTSTSLRRIPRSGPNPTQNRMKPKLRS 107
           VD +LH LP  ARKL ET+SSTS+SLRRIPRSGPNPTQNRMKP+LRS
Sbjct: 61  VD-VLHLLPLTARKLHETASSTSSSLRRIPRSGPNPTQNRMKPELRS 94

[Close]

BLAST of IVF0021561 vs. NCBI nr
Match: KAG6578843.1 (hypothetical protein SDJN03_23291, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.4 bits (220), Expect = 7.32e-21
Identity = 57/82 (69.51%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 26  LHTPTQAARMLFPFPGSHVAFTSLPLSLSSSPSYQVDFLLHHLPSAARKLGETSSSTSTS 85
           L TPTQAAR+L P P   VA TS      SS  YQVD +LH LP  ARKL ET+SSTS+S
Sbjct: 4   LPTPTQAARLLLPVP--RVASTS------SSSLYQVD-VLHLLPLTARKLHETASSTSSS 63

Query: 86  LRRIPRSGPNPTQNRMKPKLRS 107
           LRRIPRSGPNPTQNRMKP+LRS
Sbjct: 64  LRRIPRSGPNPTQNRMKPELRS 76

The following BLAST results are available for this feature:

BLAST of IVF0021561 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0021561 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C1X0	2.8e-49	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SNV6	1.9e-45	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0021561 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04416.1	5.03e-66	100.00	uncharacterized protein E5676_scaffold409G00120 [Cucumis melo var. makuwa]	[more]
KAA0031696.1	3.07e-61	100.00	uncharacterized protein E6C27_scaffold139G004800 [Cucumis melo var. makuwa]	[more]
XP_011656590.1	1.08e-55	92.66	uncharacterized protein LOC105435754 [Cucumis sativus] >KAE8646645.1 hypothetica...	[more]
KAG7016372.1	1.00e-26	68.22	hypothetical protein SDJN02_21480, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6578843.1	7.32e-21	69.51	hypothetical protein SDJN03_23291, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of IVF0021561 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0021561.1	IVF0021561.1	mRNA