IVF0021548 (gene) Melon (IVF77) v1

Overview


Name	IVF0021548
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Protein FAR1-RELATED SEQUENCE 4
Location	chr10: 13726490 .. 13726962 (-)
RNA-Seq Expression	IVF0021548
Synteny	IVF0021548

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACTGATCGTTCATTTTCTAAAGAGATTGTGCATAAGGCTCGTATAAATCTTGGAGTTAATATAAGTTACCAAAAAGCTTGGAGGGCAAAAGAACATATGGTAAAGATATTACATGGTGACACAGTTGAATCGTATGCCTTGATTCCAAGATTCTTTGATAAATTGGTTGAATCTAACCCAGGTATGATCAATTTTGTATATCAAATTTAAATTGATTTGTAGATAGATGTGGATAGACTAATATCACAATCTATCTAGATAGATAAATATTGGCATCTTTCATATTCTTTCTGTTCTTTTTTGTTTGTGCTGATAAAAATGTGTTTTTAATTATTATAAGTACATGCACTACTTTAGAAATGGATGATAGTGGTCATTTCAATTTTTGTTTTATGACTTTTGGTGCATCAATTGAGGGGTGGAAATATTGTAGACCTATTATTTCTGTTTATGGGATATTTTTGTAG

mRNA sequence

ATGTCTACTGATCGTTCATTTTCTAAAGAGATTGTGCATAAGGCTCGTATAAATCTTGGAGTTAATATAAGTTACCAAAAAGCTTGGAGGGCAAAAGAACATATGGTAAAGATATTACATGGTGACACAGTTGAATCGTATGCCTTGATTCCAAGATTCTTTGATAAATTGGTTGAATCTAACCCAGAAATGGATGATAGTGGTCATTTCAATTTTTGTTTTATGACTTTTGGTGCATCAATTGAGGGGTGGAAATATTGTAGACCTATTATTTCTGTTTATGGGATATTTTTGTAG

Coding sequence (CDS)

ATGTCTACTGATCGTTCATTTTCTAAAGAGATTGTGCATAAGGCTCGTATAAATCTTGGAGTTAATATAAGTTACCAAAAAGCTTGGAGGGCAAAAGAACATATGGTAAAGATATTACATGGTGACACAGTTGAATCGTATGCCTTGATTCCAAGATTCTTTGATAAATTGGTTGAATCTAACCCAGAAATGGATGATAGTGGTCATTTCAATTTTTGTTTTATGACTTTTGGTGCATCAATTGAGGGGTGGAAATATTGTAGACCTATTATTTCTGTTTATGGGATATTTTTGTAG

Protein sequence

MSTDRSFSKEIVHKARINLGVNISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVESNPEMDDSGHFNFCFMTFGASIEGWKYCRPIISVYGIFL

Homology

[Close]

BLAST of IVF0021548 vs. ExPASy TrEMBL
Match: A0A5A7TJB7 (Protein FAR1-RELATED SEQUENCE 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00980 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.2e-41
Identity = 87/104 (83.65%), Postives = 88/104 (84.62%), Query Frame = 0


Query: 1   MSTDRSFSKEIVHKARINLGVNISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 60
           MS DRS  KEIVHK R NLGVNISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES
Sbjct: 39  MSIDRSILKEIVHKTRTNLGVNISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 98

Query: 61  NP------EMDDSGHFNFCFMTFGASIEGWKYCRPIISVYGIFL 99
           NP      E+DD GHF FCFM FGASIEGWKYCRPIISV G FL
Sbjct: 99  NPGTCTALEIDDCGHFKFCFMAFGASIEGWKYCRPIISVDGTFL 142

[Close]

BLAST of IVF0021548 vs. ExPASy TrEMBL
Match: A0A5A7SVW4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G001160 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.5e-41
Identity = 87/104 (83.65%), Postives = 89/104 (85.58%), Query Frame = 0


Query: 1   MSTDRSFSKEIVHKARINLGVNISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 60
           MS D S  KEIVHKAR NLGVNISY+KAWRAKEHMVKILHGDTVESYALIPRFFDKLV+S
Sbjct: 39  MSIDCSIPKEIVHKARTNLGVNISYEKAWRAKEHMVKILHGDTVESYALIPRFFDKLVKS 98

Query: 61  NP------EMDDSGHFNFCFMTFGASIEGWKYCRPIISVYGIFL 99
           NP      EMDDSGHF FCFM FGASIEGWKYCRPIISV G FL
Sbjct: 99  NPCTCTALEMDDSGHFKFCFMAFGASIEGWKYCRPIISVDGTFL 142

[Close]

BLAST of IVF0021548 vs. ExPASy TrEMBL
Match: A0A5D3B9S0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00450 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.5e-41
Identity = 87/104 (83.65%), Postives = 89/104 (85.58%), Query Frame = 0


Query: 1   MSTDRSFSKEIVHKARINLGVNISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 60
           MS D S  KEIVHKAR NLGVNISY+KAWRAKEHMVKILHGDTVESYALIPRFFDKLV+S
Sbjct: 39  MSIDCSIPKEIVHKARTNLGVNISYEKAWRAKEHMVKILHGDTVESYALIPRFFDKLVKS 98

Query: 61  NP------EMDDSGHFNFCFMTFGASIEGWKYCRPIISVYGIFL 99
           NP      EMDDSGHF FCFM FGASIEGWKYCRPIISV G FL
Sbjct: 99  NPCTCTALEMDDSGHFKFCFMAFGASIEGWKYCRPIISVDGTFL 142

[Close]

BLAST of IVF0021548 vs. ExPASy TrEMBL
Match: A0A5A7T2W2 (Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold918G00260 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.6e-41
Identity = 86/104 (82.69%), Postives = 89/104 (85.58%), Query Frame = 0


Query: 1   MSTDRSFSKEIVHKARINLGVNISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 60
           MST+RS   EIVHKAR NLG+NISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES
Sbjct: 19  MSTNRSIPDEIVHKARTNLGINISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 78

Query: 61  NP------EMDDSGHFNFCFMTFGASIEGWKYCRPIISVYGIFL 99
           NP      EMDDSGHF FCFM FGASIEGWKYC+PII V G FL
Sbjct: 79  NPGTCTALEMDDSGHFKFCFMAFGASIEGWKYCKPIIYVDGKFL 122

[Close]

BLAST of IVF0021548 vs. ExPASy TrEMBL
Match: A0A5D3BVN2 (Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold968G00010 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.6e-41
Identity = 86/104 (82.69%), Postives = 89/104 (85.58%), Query Frame = 0


Query: 1   MSTDRSFSKEIVHKARINLGVNISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 60
           MST+RS   EIVHKAR NLG+NISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES
Sbjct: 19  MSTNRSIPDEIVHKARTNLGINISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 78

Query: 61  NP------EMDDSGHFNFCFMTFGASIEGWKYCRPIISVYGIFL 99
           NP      EMDDSGHF FCFM FGASIEGWKYC+PII V G FL
Sbjct: 79  NPGTCTALEMDDSGHFKFCFMAFGASIEGWKYCKPIIYVDGKFL 122

[Close]

BLAST of IVF0021548 vs. NCBI nr
Match: KAA0041797.1 (protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa] >TYK27086.1 protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 176 bits (446), Expect = 2.56e-54
Identity = 87/104 (83.65%), Postives = 88/104 (84.62%), Query Frame = 0


Query: 1   MSTDRSFSKEIVHKARINLGVNISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 60
           MS DRS  KEIVHK R NLGVNISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES
Sbjct: 39  MSIDRSILKEIVHKTRTNLGVNISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 98

Query: 61  NP------EMDDSGHFNFCFMTFGASIEGWKYCRPIISVYGIFL 98
           NP      E+DD GHF FCFM FGASIEGWKYCRPIISV G FL
Sbjct: 99  NPGTCTALEIDDCGHFKFCFMAFGASIEGWKYCRPIISVDGTFL 142

[Close]

BLAST of IVF0021548 vs. NCBI nr
Match: TYJ99762.1 (protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa])

HSP 1 Score: 174 bits (441), Expect = 6.67e-54
Identity = 85/101 (84.16%), Postives = 86/101 (85.15%), Query Frame = 0


Query: 1   MSTDRSFSKEIVHKARINLGVNISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 60
           MSTDRS +KEIVHK RINLGVNISYQKAWR KEHMVKILHGDTVESYALIPR FDK VES
Sbjct: 19  MSTDRSIAKEIVHKTRINLGVNISYQKAWRTKEHMVKILHGDTVESYALIPRLFDKFVES 78

Query: 61  NP------EMDDSGHFNFCFMTFGASIEGWKYCRPIISVYG 95
           NP      EMDDSGHF FCFM FGA IEGWKYCRPIISV G
Sbjct: 79  NPGTCTILEMDDSGHFKFCFMAFGALIEGWKYCRPIISVDG 119

[Close]

BLAST of IVF0021548 vs. NCBI nr
Match: TYK02872.1 (protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa])

HSP 1 Score: 175 bits (443), Expect = 7.09e-54
Identity = 86/104 (82.69%), Postives = 89/104 (85.58%), Query Frame = 0


Query: 1   MSTDRSFSKEIVHKARINLGVNISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 60
           MST+RS   EIVHKAR NLG+NISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES
Sbjct: 19  MSTNRSIPDEIVHKARTNLGINISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 78

Query: 61  NP------EMDDSGHFNFCFMTFGASIEGWKYCRPIISVYGIFL 98
           NP      EMDDSGHF FCFM FGASIEGWKYC+PII V G FL
Sbjct: 79  NPGTCTALEMDDSGHFKFCFMAFGASIEGWKYCKPIIYVDGKFL 122

[Close]

BLAST of IVF0021548 vs. NCBI nr
Match: KAA0037812.1 (protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa])

HSP 1 Score: 175 bits (443), Expect = 6.73e-53
Identity = 86/104 (82.69%), Postives = 89/104 (85.58%), Query Frame = 0


Query: 1   MSTDRSFSKEIVHKARINLGVNISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 60
           MST+RS   EIVHKAR NLG+NISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES
Sbjct: 19  MSTNRSIPDEIVHKARTNLGINISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 78

Query: 61  NP------EMDDSGHFNFCFMTFGASIEGWKYCRPIISVYGIFL 98
           NP      EMDDSGHF FCFM FGASIEGWKYC+PII V G FL
Sbjct: 79  NPGTCTALEMDDSGHFKFCFMAFGASIEGWKYCKPIIYVDGKFL 122

[Close]

BLAST of IVF0021548 vs. NCBI nr
Match: KAA0033561.1 (uncharacterized protein E6C27_scaffold261G001160 [Cucumis melo var. makuwa])

HSP 1 Score: 176 bits (445), Expect = 2.46e-52
Identity = 87/104 (83.65%), Postives = 89/104 (85.58%), Query Frame = 0


Query: 1   MSTDRSFSKEIVHKARINLGVNISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 60
           MS D S  KEIVHKAR NLGVNISY+KAWRAKEHMVKILHGDTVESYALIPRFFDKLV+S
Sbjct: 39  MSIDCSIPKEIVHKARTNLGVNISYEKAWRAKEHMVKILHGDTVESYALIPRFFDKLVKS 98

Query: 61  NP------EMDDSGHFNFCFMTFGASIEGWKYCRPIISVYGIFL 98
           NP      EMDDSGHF FCFM FGASIEGWKYCRPIISV G FL
Sbjct: 99  NPCTCTALEMDDSGHFKFCFMAFGASIEGWKYCRPIISVDGTFL 142

[Close]

BLAST of IVF0021548 vs. TAIR 10
Match: AT1G64260.1 (MuDR family transposase )

HSP 1 Score: 41.2 bits (95), Expect = 5.6e-04
Identity = 23/84 (27.38%), Postives = 38/84 (45.24%), Query Frame = 0


Query: 20  GVNISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVESNPEM----------DDSGH 79
           G  +   K    K  ++K + GD  +S+ ++P+       SN  +           D   
Sbjct: 298 GYELQTSKMRDGKLEVIKRVFGDEDQSFRVMPKLISAFHSSNGLLVDWQYDLFPNPDFAS 357

Query: 80  FNFCFMTFGASIEGWKYCRPIISV 94
           F   F +F  SIEG+++CRP+I V
Sbjct: 358 FRGVFWSFSQSIEGFQHCRPLIVV 381

The following BLAST results are available for this feature:

BLAST of IVF0021548 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0021548 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TJB7	1.2e-41	83.65	Protein FAR1-RELATED SEQUENCE 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7SVW4	1.5e-41	83.65	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3B9S0	1.5e-41	83.65	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T2W2	2.6e-41	82.69	Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3BVN2	2.6e-41	82.69	Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of IVF0021548 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041797.1	2.56e-54	83.65	protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa] >TYK27086.1 prot...	[more]
TYJ99762.1	6.67e-54	84.16	protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa]	[more]
TYK02872.1	7.09e-54	82.69	protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa]	[more]
KAA0037812.1	6.73e-53	82.69	protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa]	[more]
KAA0033561.1	2.46e-52	83.65	uncharacterized protein E6C27_scaffold261G001160 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0021548 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G64260.1	5.6e-04	27.38	MuDR family transposase	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0021548.2	IVF0021548.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding