IVF0021545 (gene) Melon (IVF77) v1

Overview
NameIVF0021545
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPMD domain-containing protein
Locationchr08: 14963460 .. 14963826 (-)
RNA-Seq ExpressionIVF0021545
SyntenyIVF0021545
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGCTACTCTCGATGAGGAGATAAAGGAGCATAAAGATGAAAGCGATAGCGACAAAAGTGATCGTCATTGGAAGATACCTTTGAAGAAAACGAAGGTATCAGGTGATGATCCCAGTGGAAGGGGTTCAAGTGCTTTGAGAGTCCCTAATGTTCCACCACTGGTTTACACATTTTCATTTCTTAAAATTTTTTGTTCATCTTCTTCACAAATGACTTATTAATTGTTTACTTCTTCAATCACCTTTGAACGATCATCTTGAAGGCCTTATAGAGATAGGCAGCAATGAATCTTTGATGGGACCTCATGTAGTTGATTCTCCATTGAGGAAGTTGGTACCTCGAAGACTCCCATCTCTAAACTAG

mRNA sequence

ATGACTGCTACTCTCGATGAGGAGATAAAGGAGCATAAAGATGAAAGCGATAGCGACAAAAGTGATCGTCATTGGAAGATACCTTTGAAGAAAACGAAGGTATCAGGCCTTATAGAGATAGGCAGCAATGAATCTTTGATGGGACCTCATGTAGTTGATTCTCCATTGAGGAAGTTGGTACCTCGAAGACTCCCATCTCTAAACTAG

Coding sequence (CDS)

ATGACTGCTACTCTCGATGAGGAGATAAAGGAGCATAAAGATGAAAGCGATAGCGACAAAAGTGATCGTCATTGGAAGATACCTTTGAAGAAAACGAAGGTATCAGGCCTTATAGAGATAGGCAGCAATGAATCTTTGATGGGACCTCATGTAGTTGATTCTCCATTGAGGAAGTTGGTACCTCGAAGACTCCCATCTCTAAACTAG

Protein sequence

MTATLDEEIKEHKDESDSDKSDRHWKIPLKKTKVSGLIEIGSNESLMGPHVVDSPLRKLVPRRLPSLN
Homology
BLAST of IVF0021545 vs. ExPASy TrEMBL
Match: A0A5D3BTQ8 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold784G00350 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.2e-22
Identity = 59/67 (88.06%), Postives = 60/67 (89.55%), Query Frame = 0

Query: 1   MTATLDEEIKEHKDESDSDKSDRHWKIPLKKTKVS-------GLIEIGSNESLMGPHVVD 60
           MTATLDEEIKEHKDESDSDKSDRHWKIPLKKTKVS       GLIEIGSNESLMGPHVVD
Sbjct: 255 MTATLDEEIKEHKDESDSDKSDRHWKIPLKKTKVSGDDPSGRGLIEIGSNESLMGPHVVD 314

BLAST of IVF0021545 vs. ExPASy TrEMBL
Match: A0A5A7TUP1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002650 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.2e-14
Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 0

Query: 1   MTATLDEEIKEHKDESDSDKSDRHWKIPLKKTK------VSGLIEIGSNESLMGPHVVDS 60
           MT TL+EE+KEHKDESDS+KSDRHWK PLKK K      + GLIE+GS+ESL GPHVVDS
Sbjct: 137 MTPTLEEEVKEHKDESDSNKSDRHWKRPLKKAKSPLNNHLEGLIELGSDESLTGPHVVDS 196

Query: 61  PLRKLVPRRLP 66
              ++   + P
Sbjct: 197 AFEEVGTSKTP 207

BLAST of IVF0021545 vs. ExPASy TrEMBL
Match: A0A5A7UIU2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G001140 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.5e-14
Identity = 45/74 (60.81%), Postives = 53/74 (71.62%), Query Frame = 0

Query: 1  MTATLDEEIKEHKDESDSDKSDRHWKIPLKKTKVS-------GLIEIGSNESLMGPHVVD 60
          M ATL+EE+KEHKDESD  KSDRHWK PLKK KVS       GLIE+G++ESL GPH VD
Sbjct: 1  MDATLEEEVKEHKDESDISKSDRHWKRPLKKAKVSVDDPDGRGLIELGNDESLKGPHAVD 60

Query: 61 SPLRKLVPRRLPSL 68
          S + K+   + P L
Sbjct: 61 SAIEKVGTLKTPVL 74

BLAST of IVF0021545 vs. ExPASy TrEMBL
Match: A0A5A7SL07 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002430 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.9e-13
Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 0

Query: 1   MTATLDEEIKEHKDESDSDKSDRHWKIPLKKTKVSGLIEIGSNESLMGPHVVDSPLRKLV 60
           M ATL+EEI EHKDESDS KSD HWK PLKK  V GLIE+GS+ESL  PH +DS + ++ 
Sbjct: 82  MVATLEEEINEHKDESDSRKSDCHWKRPLKKANVPGLIELGSDESLTRPHAIDSAMEEVG 141

Query: 61  PRRLP 66
             + P
Sbjct: 142 TSKTP 146

BLAST of IVF0021545 vs. ExPASy TrEMBL
Match: A0A5D3BU95 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold517G00020 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.9e-13
Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 0

Query: 1  MTATLDEEIKEHKDESDSDKSDRHWKIPLKKTKVSGLIEIGSNESLMGPHVVDSPLRKLV 60
          M ATL+EEI EHKDESDS KSD HWK PLKK  V GLIE+GS+ESL  PH +DS + ++ 
Sbjct: 1  MAATLEEEINEHKDESDSRKSDCHWKRPLKKANVPGLIELGSDESLTRPHAIDSAIEEVG 60

Query: 61 PRRLP 66
            + P
Sbjct: 61 TSKTP 65

BLAST of IVF0021545 vs. NCBI nr
Match: TYK02510.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (280), Expect = 2.71e-27
Identity = 59/67 (88.06%), Postives = 60/67 (89.55%), Query Frame = 0

Query: 1   MTATLDEEIKEHKDESDSDKSDRHWKIPLKKTKVSG-------LIEIGSNESLMGPHVVD 60
           MTATLDEEIKEHKDESDSDKSDRHWKIPLKKTKVSG       LIEIGSNESLMGPHVVD
Sbjct: 255 MTATLDEEIKEHKDESDSDKSDRHWKIPLKKTKVSGDDPSGRGLIEIGSNESLMGPHVVD 314

BLAST of IVF0021545 vs. NCBI nr
Match: KAA0054196.1 (hypothetical protein E6C27_scaffold131G001330 [Cucumis melo var. makuwa] >TYK15064.1 hypothetical protein E5676_scaffold45G001140 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 1.46e-19
Identity = 45/74 (60.81%), Postives = 53/74 (71.62%), Query Frame = 0

Query: 1  MTATLDEEIKEHKDESDSDKSDRHWKIPLKKTKVS-------GLIEIGSNESLMGPHVVD 60
          M ATL+EE+KEHKDESD  KSDRHWK PLKK KVS       GLIE+G++ESL GPH VD
Sbjct: 1  MDATLEEEVKEHKDESDISKSDRHWKRPLKKAKVSVDDPDGRGLIELGNDESLKGPHAVD 60

Query: 61 SPLRKLVPRRLPSL 67
          S + K+   + P L
Sbjct: 61 SAIEKVGTLKTPVL 74

BLAST of IVF0021545 vs. NCBI nr
Match: KAA0044959.1 (hypothetical protein E6C27_scaffold74G002650 [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 1.52e-18
Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 0

Query: 1   MTATLDEEIKEHKDESDSDKSDRHWKIPLKKTK------VSGLIEIGSNESLMGPHVVDS 60
           MT TL+EE+KEHKDESDS+KSDRHWK PLKK K      + GLIE+GS+ESL GPHVVDS
Sbjct: 137 MTPTLEEEVKEHKDESDSNKSDRHWKRPLKKAKSPLNNHLEGLIELGSDESLTGPHVVDS 196

Query: 61  PLRKLVPRRLP 65
              ++   + P
Sbjct: 197 AFEEVGTSKTP 207

BLAST of IVF0021545 vs. NCBI nr
Match: TYK01669.1 (hypothetical protein E5676_scaffold517G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 2.43e-17
Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 0

Query: 1  MTATLDEEIKEHKDESDSDKSDRHWKIPLKKTKVSGLIEIGSNESLMGPHVVDSPLRKLV 60
          M ATL+EEI EHKDESDS KSD HWK PLKK  V GLIE+GS+ESL  PH +DS + ++ 
Sbjct: 1  MAATLEEEINEHKDESDSRKSDCHWKRPLKKANVPGLIELGSDESLTRPHAIDSAIEEVG 60

Query: 61 PRRLP 65
            + P
Sbjct: 61 TSKTP 65

BLAST of IVF0021545 vs. NCBI nr
Match: KAA0054546.1 (hypothetical protein E6C27_scaffold24G003300 [Cucumis melo var. makuwa] >TYK20405.1 hypothetical protein E5676_scaffold519G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 4.66e-17
Identity = 41/74 (55.41%), Postives = 50/74 (67.57%), Query Frame = 0

Query: 1  MTATLDEEIKEHKDESDSDKSDRHWKIPLKKTKVSG---------LIEIGSNESLMGPHV 60
          M  TL+EE+KEHKDESDS KSD HWK PLKK KVSG         LIE+ S+ESL GPH 
Sbjct: 1  MNPTLEEEVKEHKDESDSSKSDCHWKRPLKKAKVSGEDLEGMSSRLIELASDESLTGPHA 60

Query: 61 VDSPLRKLVPRRLP 65
          +DS  +++   + P
Sbjct: 61 IDSAFKEVGTSKTP 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BTQ83.2e-2288.06Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7TUP13.2e-1461.97Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UIU25.5e-1460.81Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SL077.9e-1361.54Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BU957.9e-1361.54Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
TYK02510.12.71e-2788.06putative mitochondrial protein [Cucumis melo var. makuwa][more]
KAA0054196.11.46e-1960.81hypothetical protein E6C27_scaffold131G001330 [Cucumis melo var. makuwa] >TYK150... [more]
KAA0044959.11.52e-1861.97hypothetical protein E6C27_scaffold74G002650 [Cucumis melo var. makuwa][more]
TYK01669.12.43e-1761.54hypothetical protein E5676_scaffold517G00020 [Cucumis melo var. makuwa][more]
KAA0054546.14.66e-1755.41hypothetical protein E6C27_scaffold24G003300 [Cucumis melo var. makuwa] >TYK2040... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0021545.1IVF0021545.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane