IVF0021533 (gene) Melon (IVF77) v1

Overview


Name	IVF0021533
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr05: 6777757 .. 6778161 (-)
RNA-Seq Expression	IVF0021533
Synteny	IVF0021533

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCGGAAAAAGGAAGTGCTAGAGGAAGAACAAACTTTACCTCTTCAAAGGGCAATCGCCAATATTCTTCTTCTAATTCTGCACCCTCACCTATGAGTGCAAATCAATATACAATGGATTTAGGGTTTACCACAGTAACCCGATCCAGATCAAGATCGTATGGCATACGGATTGGGTCTCCCACGGAGTCATCAACTCCACCTAGGCCTTCAGTCAATCTTATCCGTCCTTCTGGTGGAGTCGTTCAAATGAGGCCTTCGCCTCTCCTTCATCCAATAGGGATTCTTCTATTCCTCCTACAACTTATTCTCAGGCTGTCACCCCCGATAAACGGTTTGTGCCAAGACCCGAGATCAAATCTTATTTTCAAAAGCCTATCGTTGTTTATGATCCTATCATAG

mRNA sequence

ATGAGTTCGGAAAAAGGAAGTGCTAGAGGAAGAACAAACTTTACCTCTTCAAAGGGCAATCGCCAATATTCTTCTTCTAATTCTGCACCCTCACCTATGAGTGCAAATCAATATACAATGGATTTAGGGTTTACCACAGTAACCCGATCCAGATCAAGATCGTATGGCATACGGATTGGGTCTCCCACGGAGTCATCAACTCCACCTAGGCCTTCAGTCAATCTTATCCGTCCTTCTGGTGGAGTCGTTCAAATGAGGCCTTCGCCTCTCCTTCATCCAATAGGGATTCTTCTATTCCTCCTACAACTTATTCTCAGGCTGTCACCCCCGATAAACGGTTTGTGCCAAGACCCGAGATCAAATCTTATTTTCAAAAGCCTATCGTTGTTTATGATCCTATCATAG

Coding sequence (CDS)

ATGAGTTCGGAAAAAGGAAGTGCTAGAGGAAGAACAAACTTTACCTCTTCAAAGGGCAATCGCCAATATTCTTCTTCTAATTCTGCACCCTCACCTATGAGTGCAAATCAATATACAATGGATTTAGGGTTTACCACAGTAACCCGATCCAGATCAAGATCGTATGGCATACGGATTGGGTCTCCCACGGAGTCATCAACTCCACCTAGGCCTTCAGTCAATCTTATCCGTCCTTCTGGTGGAGTCGTTCAAATGAGGCCTTCGCCTCTCCTTCATCCAATAGGGATTCTTCTATTCCTCCTACAACTTATTCTCAGGCTGTCACCCCCGATAAACGGTTTGTGCCAAGACCCGAGATCAAATCTTATTTTCAAAAGCCTATCGTTGTTTATGATCCTATCATAG

Protein sequence

MSSEKGSARGRTNFTSSKGNRQYSSSNSAPSPMSANQYTMDLGFTTVTRSRSRSYGIRIGSPTESSTPPRPSVNLIRPSGGVVQMRPSPLLHPIGILLFLLQLILRLSPPINGLCQDPRSNLIFKSLSLFMILS

Homology

[Close]

BLAST of IVF0021533 vs. ExPASy TrEMBL
Match: A0A5D3D0R2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00980 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 8.7e-64
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MSSEKGSARGRTNFTSSKGNRQYSSSNSAPSPMSANQYTMDLGFTTVTRSRSRSYGIRIG 60
           MSSEKGSARGRTNFTSSKGNRQYSSSNSAPSPMSANQYTMDLGFTTVTRSRSRSYGIRIG
Sbjct: 1   MSSEKGSARGRTNFTSSKGNRQYSSSNSAPSPMSANQYTMDLGFTTVTRSRSRSYGIRIG 60

Query: 61  SPTESSTPPRPSVNLIRPSGGVVQMRPSPLLHPIGILLFLLQLILRLSPPINGLCQDPRS 120
           SPTESSTPPRPSVNLIRPSGGVVQMRPSPLLHPIGILLFLLQLILRLSPPINGLCQDPRS
Sbjct: 61  SPTESSTPPRPSVNLIRPSGGVVQMRPSPLLHPIGILLFLLQLILRLSPPINGLCQDPRS 120

Query: 121 NLIFKSLSLFMILS 135
           NLIFKSLSLFMILS
Sbjct: 121 NLIFKSLSLFMILS 134

[Close]

BLAST of IVF0021533 vs. ExPASy TrEMBL
Match: A0A5A7TP36 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G00680 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.8e-30
Identity = 89/134 (66.42%), Postives = 95/134 (70.90%), Query Frame = 0


Query: 1   MSSEKGSARGRTNFTSSKGNRQYSSSNSAPSPMSANQYTMDLGFTTVTRSRSRSYGIRIG 60
           MSSEKGSARGRTN TSSKGN   SSSN A SP++A+QY MDLGFTTVTRSRSRS GIRIG
Sbjct: 1   MSSEKGSARGRTNSTSSKGNHPSSSSNYALSPLNADQYAMDLGFTTVTRSRSRSSGIRIG 60

Query: 61  SPTESSTPPRPSVNLIRPSGGVVQMRPSPLLHPIGILLFLLQLILRLSPPINGLCQDPRS 120
           S TESSTPPRPS NLI PSGGVVQMRPS                 ++  P       P S
Sbjct: 61  SLTESSTPPRPSTNLICPSGGVVQMRPSASPSSNKEYSTPPTTYSQVVTPDKWFVPRPES 120

Query: 121 NLIFKSLSLFMILS 135
           NLIFKSLS F+ILS
Sbjct: 121 NLIFKSLSSFVILS 134

[Close]

BLAST of IVF0021533 vs. ExPASy TrEMBL
Match: A0A5A7TB73 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1121G00570 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 6.3e-30
Identity = 78/88 (88.64%), Postives = 78/88 (88.64%), Query Frame = 0


Query: 1  MSSEKGSARGRTNFTSSKGNRQYSSSNSAPSPMSANQYTMDLGFTTVTRSRSRSYGIRIG 60
          MSSEKGSARGRTN TSSKGNR  SSSN APSPMSA QY MDLGFTTVTRSRSRS  IRIG
Sbjct: 1  MSSEKGSARGRTNSTSSKGNRPSSSSNFAPSPMSAYQYAMDLGFTTVTRSRSRSSSIRIG 60

Query: 61 SPTESSTPPRPSVNLIRPSGGVVQMRPS 89
          SPTESSTPPRPS NLIRPS GVVQMRPS
Sbjct: 61 SPTESSTPPRPSANLIRPSRGVVQMRPS 88

[Close]

BLAST of IVF0021533 vs. ExPASy TrEMBL
Match: A0A5A7VIK7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001030 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.1e-29
Identity = 76/87 (87.36%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 1  MSSEKGSARGRTNFTSSKGNRQYSSSNSAPSPMSANQYTMDLGFTTVTRSRSRSYGIRIG 60
          MSSEK SARGRTN TSSKGN  YSSSNSAPSPMSANQY MDLGFTTVTRSRSRS+ I+IG
Sbjct: 1  MSSEKVSARGRTNSTSSKGNCPYSSSNSAPSPMSANQYAMDLGFTTVTRSRSRSFDIKIG 60

Query: 61 SPTESSTPPRPSVNLIRPSGGVVQMRP 88
          SPTESSTPPRPS NLI  SGGVVQMRP
Sbjct: 61 SPTESSTPPRPSANLIHSSGGVVQMRP 87

[Close]

BLAST of IVF0021533 vs. ExPASy TrEMBL
Match: A0A5A7TM80 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold592G00220 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.2e-28
Identity = 74/87 (85.06%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 1  MSSEKGSARGRTNFTSSKGNRQYSSSNSAPSPMSANQYTMDLGFTTVTRSRSRSYGIRIG 60
          MSS+KGSARGRTN TSSKGNR  SSSNSAPSP+SA+QY MDLGFTTVTR  SRS+GI IG
Sbjct: 1  MSSDKGSARGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIG 60

Query: 61 SPTESSTPPRPSVNLIRPSGGVVQMRP 88
          SPTESSTPPRPS NLIRPS GVVQMRP
Sbjct: 61 SPTESSTPPRPSTNLIRPSSGVVQMRP 87

[Close]

BLAST of IVF0021533 vs. NCBI nr
Match: KAA0032003.1 (hypothetical protein E6C27_scaffold134G001000 [Cucumis melo var. makuwa] >TYK16824.1 hypothetical protein E5676_scaffold96G00980 [Cucumis melo var. makuwa])

HSP 1 Score: 249 bits (635), Expect = 7.50e-83
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MSSEKGSARGRTNFTSSKGNRQYSSSNSAPSPMSANQYTMDLGFTTVTRSRSRSYGIRIG 60
           MSSEKGSARGRTNFTSSKGNRQYSSSNSAPSPMSANQYTMDLGFTTVTRSRSRSYGIRIG
Sbjct: 1   MSSEKGSARGRTNFTSSKGNRQYSSSNSAPSPMSANQYTMDLGFTTVTRSRSRSYGIRIG 60

Query: 61  SPTESSTPPRPSVNLIRPSGGVVQMRPSPLLHPIGILLFLLQLILRLSPPINGLCQDPRS 120
           SPTESSTPPRPSVNLIRPSGGVVQMRPSPLLHPIGILLFLLQLILRLSPPINGLCQDPRS
Sbjct: 61  SPTESSTPPRPSVNLIRPSGGVVQMRPSPLLHPIGILLFLLQLILRLSPPINGLCQDPRS 120

Query: 121 NLIFKSLSLFMILS 134
           NLIFKSLSLFMILS
Sbjct: 121 NLIFKSLSLFMILS 134

[Close]

BLAST of IVF0021533 vs. NCBI nr
Match: KAA0038837.1 (hypothetical protein E6C27_scaffold2487G00030 [Cucumis melo var. makuwa] >TYK14263.1 hypothetical protein E5676_scaffold1121G00570 [Cucumis melo var. makuwa])

HSP 1 Score: 138 bits (348), Expect = 2.09e-39
Identity = 78/88 (88.64%), Postives = 78/88 (88.64%), Query Frame = 0


Query: 1  MSSEKGSARGRTNFTSSKGNRQYSSSNSAPSPMSANQYTMDLGFTTVTRSRSRSYGIRIG 60
          MSSEKGSARGRTN TSSKGNR  SSSN APSPMSA QY MDLGFTTVTRSRSRS  IRIG
Sbjct: 1  MSSEKGSARGRTNSTSSKGNRPSSSSNFAPSPMSAYQYAMDLGFTTVTRSRSRSSSIRIG 60

Query: 61 SPTESSTPPRPSVNLIRPSGGVVQMRPS 88
          SPTESSTPPRPS NLIRPS GVVQMRPS
Sbjct: 61 SPTESSTPPRPSANLIRPSRGVVQMRPS 88

[Close]

BLAST of IVF0021533 vs. NCBI nr
Match: KAA0067933.1 (hypothetical protein E6C27_scaffold138G001030 [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (345), Expect = 8.34e-39
Identity = 76/87 (87.36%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 1  MSSEKGSARGRTNFTSSKGNRQYSSSNSAPSPMSANQYTMDLGFTTVTRSRSRSYGIRIG 60
          MSSEK SARGRTN TSSKGN  YSSSNSAPSPMSANQY MDLGFTTVTRSRSRS+ I+IG
Sbjct: 1  MSSEKVSARGRTNSTSSKGNCPYSSSNSAPSPMSANQYAMDLGFTTVTRSRSRSFDIKIG 60

Query: 61 SPTESSTPPRPSVNLIRPSGGVVQMRP 87
          SPTESSTPPRPS NLI  SGGVVQMRP
Sbjct: 61 SPTESSTPPRPSANLIHSSGGVVQMRP 87

[Close]

BLAST of IVF0021533 vs. NCBI nr
Match: KAA0045303.1 (hypothetical protein E6C27_scaffold316G00680 [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (344), Expect = 1.55e-38
Identity = 90/146 (61.64%), Postives = 97/146 (66.44%), Query Frame = 0


Query: 1   MSSEKGSARGRTNFTSSKGNRQYSSSNSAPSPMSANQYTMDLGFTTVTRSRSRSYGIRIG 60
           MSSEKGSARGRTN TSSKGN   SSSN A SP++A+QY MDLGFTTVTRSRSRS GIRIG
Sbjct: 1   MSSEKGSARGRTNSTSSKGNHPSSSSNYALSPLNADQYAMDLGFTTVTRSRSRSSGIRIG 60

Query: 61  SPTESSTPPRPSVNLIRPSGGVVQMRPS------------PLLHPIGILLFLLQLILRLS 120
           S TESSTPPRPS NLI PSGGVVQMRPS            P  +             ++ 
Sbjct: 61  SLTESSTPPRPSTNLICPSGGVVQMRPSASPSSNKEYSTPPTTYS------------QVV 120

Query: 121 PPINGLCQDPRSNLIFKSLSLFMILS 134
            P       P SNLIFKSLS F+ILS
Sbjct: 121 TPDKWFVPRPESNLIFKSLSSFVILS 134

[Close]

BLAST of IVF0021533 vs. NCBI nr
Match: TYK14869.1 (hypothetical protein E5676_scaffold1432G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 133 bits (334), Expect = 3.17e-37
Identity = 73/87 (83.91%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 1  MSSEKGSARGRTNFTSSKGNRQYSSSNSAPSPMSANQYTMDLGFTTVTRSRSRSYGIRIG 60
          MSSEKGSA+GRTN TS+KGNR  SSSNS PSP SA+Q  MDLGFTTVTRSRSRS+GIRIG
Sbjct: 1  MSSEKGSAKGRTNSTSTKGNRPSSSSNSTPSPTSADQNAMDLGFTTVTRSRSRSFGIRIG 60

Query: 61 SPTESSTPPRPSVNLIRPSGGVVQMRP 87
          SP E STPPRPS NLIRPSGGVVQMRP
Sbjct: 61 SPMELSTPPRPSTNLIRPSGGVVQMRP 87

The following BLAST results are available for this feature:

BLAST of IVF0021533 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0021533 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D0R2	8.7e-64	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TP36	4.8e-30	66.42	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TB73	6.3e-30	88.64	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VIK7	1.1e-29	87.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TM80	1.2e-28	85.06	Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of IVF0021533 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032003.1	7.50e-83	100.00	hypothetical protein E6C27_scaffold134G001000 [Cucumis melo var. makuwa] >TYK168...	[more]
KAA0038837.1	2.09e-39	88.64	hypothetical protein E6C27_scaffold2487G00030 [Cucumis melo var. makuwa] >TYK142...	[more]
KAA0067933.1	8.34e-39	87.36	hypothetical protein E6C27_scaffold138G001030 [Cucumis melo var. makuwa]	[more]
KAA0045303.1	1.55e-38	61.64	hypothetical protein E6C27_scaffold316G00680 [Cucumis melo var. makuwa]	[more]
TYK14869.1	3.17e-37	83.91	hypothetical protein E5676_scaffold1432G00040 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0021533 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0021533.1	IVF0021533.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding