IVF0021484 (gene) Melon (IVF77) v1

Overview


Name	IVF0021484
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr05: 7213861 .. 7215160 (-)
RNA-Seq Expression	IVF0021484
Synteny	IVF0021484

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTCCATCAAGGTTGACAACCTTGATCCTTTTTTAGATGCAACCTCTCTATTCACCGAATTTATTAACGACGAAATCTGTCTCAAGTTTTCACCGTCGACGTTTTCGATGATTGCTCGATATCAATGCCCAACCTTCTTTGCAATGATGTTCATGCCACATCCATTGTTCGACGAGTACTCCGTTGATCGGAATCATATTTCAAGGATTTCTCTCCGATGCTTCCGGAATGCTCTGTTGGAAGGTCAAACCTATTCCTCAATGAGTATCCATCTTCAAGAACCCCAAAATACCATAATCTTTAAATTTGAGCCTTCAAGTTAAGTATATATACAATAATATCATTTTTTTTCTCTTTTTTCTCCTAAAAAGTGGATCAACAGAAGTTATTTTGTTTTCATTTTTTCTACTTATCAACTTTTTGTGATTTCTTAACTAATTCAAAATTTGTTTGCGAACATGTTTGATATTCTAGAATTCCTCAGTTTCCACATATGATTGATCTACTATCTTGCTCAACTTTGAAGGCTTTCCTTTAGCTTGATCTTCTCTTTTGTACTTTTCTTTTTTTTTTTTTACTACTTGGAGATTCTCTCCAACTCTTTGTGTAATTCTTCCATTGTGTGAATGTATTTACTCGTGAGCCAAAGCATAATTAATGTATGCGGGTACTATAAGATGTGTCAACCTAGTCAAGATATTCTAATATAAGCTCCGATCCCATTTCTTCATTATATTTTGTTCAAAAAACAAAATGTTTGATTCTGTGTTCTTTTTCCTTCACATCAAATGTACTTTTAGAGTTTAAATTTTATAGATTCATCCTTATATTTTAAATTAATACATTTTAATTATTTCTTGTGTTTTCAATAAAATCTCAAATTTAGTTCATGTTTAGTTTGTATGCATGTCAATTCAGGATTCAAATTATAACTTTTGTTTTAAGGGCCTTCTGCACTACCATTGCATCATGAATTGACATTCTTGCCCATGGAAGATTGGTCTCCTAACCAAGTTAGCTTAAATGGAAAACTTTTCTCCATTGAGTCTGAAATGTTTAGCAATATTTTAACAACATTTTCTGTCTACAATGAAGTTGATACAAGTAATGTACCTCTTCTTTTTCTTTATCCATTTCTACTTGAACGAAAGTTGTATATCTTGGTACGTAGCTAAAACCCTTTCTTCATTTGCCACAGTTTTGATTACCTCAAAGGGTTCACAAATCACATTCTCTGCGGTTCCATGTGAGGAGATAATTATTAGGGAAGAGGTATGTTTTGTGAAATTTGTGTAA

mRNA sequence

ATGTTCTCCATCAAGGTTGACAACCTTGATCCTTTTTTAGATGCAACCTCTCTATTCACCGAATTTATTAACGACGAAATCTGTCTCAAGTTTTCACCGTCGACGTTTTCGATGATTGCTCGATATCAATGCCCAACCTTCTTTGCAATGATGTTCATGCCACATCCATTGTTCGACGAGTACTCCGTTGATCGGAATCATATTTCAAGGATTTCTCTCCGATGCTTCCGGAATGCTCTGTTGGAAGGTCAAACCTATTCCTCAATGAGTATCCATCTTCAAGAACCCCAAAATACCATAATCTTTAAATTTGAGCCTTCAAGGCCTTCTGCACTACCATTGCATCATGAATTGACATTCTTGCCCATGGAAGATTGGTCTCCTAACCAAGTTAGCTTAAATGGAAAACTTTTCTCCATTGAGTCTGAAATGTTTAGCAATATTTTAACAACATTTTCTGTCTACAATGAAGTTGATACAATTTTGATTACCTCAAAGGGTTCACAAATCACATTCTCTGCGGTTCCATGTGAGGAGATAATTATTAGGGAAGAGGTATGTTTTGTGAAATTTGTGTAA

Coding sequence (CDS)

ATGTTCTCCATCAAGGTTGACAACCTTGATCCTTTTTTAGATGCAACCTCTCTATTCACCGAATTTATTAACGACGAAATCTGTCTCAAGTTTTCACCGTCGACGTTTTCGATGATTGCTCGATATCAATGCCCAACCTTCTTTGCAATGATGTTCATGCCACATCCATTGTTCGACGAGTACTCCGTTGATCGGAATCATATTTCAAGGATTTCTCTCCGATGCTTCCGGAATGCTCTGTTGGAAGGTCAAACCTATTCCTCAATGAGTATCCATCTTCAAGAACCCCAAAATACCATAATCTTTAAATTTGAGCCTTCAAGGCCTTCTGCACTACCATTGCATCATGAATTGACATTCTTGCCCATGGAAGATTGGTCTCCTAACCAAGTTAGCTTAAATGGAAAACTTTTCTCCATTGAGTCTGAAATGTTTAGCAATATTTTAACAACATTTTCTGTCTACAATGAAGTTGATACAATTTTGATTACCTCAAAGGGTTCACAAATCACATTCTCTGCGGTTCCATGTGAGGAGATAATTATTAGGGAAGAGGTATGTTTTGTGAAATTTGTGTAA

Protein sequence

MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMMFMPHPLFDEYSVDRNHISRISLRCFRNALLEGQTYSSMSIHLQEPQNTIIFKFEPSRPSALPLHHELTFLPMEDWSPNQVSLNGKLFSIESEMFSNILTTFSVYNEVDTILITSKGSQITFSAVPCEEIIIREEVCFVKFV

Homology

[Close]

BLAST of IVF0021484 vs. ExPASy TrEMBL
Match: A0A0A0LIE0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G155090 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 2.2e-60
Identity = 132/192 (68.75%), Postives = 137/192 (71.35%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMMFMPHPLFDE 60
           MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAM+FMPHPLF E
Sbjct: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQTYSSMSIHLQEPQNTIIFKFEPSRPSALPLHHELTF 120
           YSVDRNHISRISLRCFRNALLEGQ+YSSMSIHL+EPQNTI+FKFEPS             
Sbjct: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPS------------- 120

Query: 121 LPMEDWSPNQVSLNGKLFSIESEMFSNILTTFSVYNEVDTILITSKGSQITFSAVPCEEI 180
                                                   ILITS+GSQITFSAVP EEI
Sbjct: 121 ----------------------------------------ILITSRGSQITFSAVPREEI 139

Query: 181 IIREEVCFVKFV 193
           IIREEVCFVKFV
Sbjct: 181 IIREEVCFVKFV 139

[Close]

BLAST of IVF0021484 vs. ExPASy TrEMBL
Match: A0A0A0KB76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002310 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.6e-47
Identity = 99/161 (61.49%), Postives = 121/161 (75.16%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMMFMPHPLFDE 60
           MFSIK+D LDP LDA SLFT+ +ND+ICLKFS STFS+IARYQ P FFAM+F+P PLF E
Sbjct: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQTYSSMSIHLQEPQNTIIFKFEPSRPSALPLHHELTF 120
           Y V R+HI R+SL     AL  GQTYSS+ IHLQE QN I   FEPSR S +P+  ++ F
Sbjct: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRF 120

Query: 121 -LPMEDWSPNQVSLNGKLFSIESEMFSNILTTFSVYNEVDT 161
            +PMEDWS  ++  + K FSIES++F +I+TTF  YNEVDT
Sbjct: 121 EVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDT 161

[Close]

BLAST of IVF0021484 vs. ExPASy TrEMBL
Match: A0A5A7TVD7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001420 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.6e-34
Identity = 77/138 (55.80%), Postives = 102/138 (73.91%), Query Frame = 0


Query: 50  MMFMPHPLFDEYSVDRNHISRISLRCFRNALLEGQTYSSMSIHLQEPQNTIIFKFEPSRP 109
           MM MP PLF EYSVDRNHIS +SL    NAL++G+T+++++I ++E QN I   FE S P
Sbjct: 1   MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSP 60

Query: 110 SALPLHHELTF-LPMEDWSPNQVSLNGKLFSIESEMFSNILTTFSVYNEVDTILITSKGS 169
           S LPL+ ELTF +PMEDWSP  V  +GK+FSIESE+F++I+  FS +NE D ILIT+ GS
Sbjct: 61  STLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAILITAFGS 120

Query: 170 QITFSAVPCEEIIIREEV 187
           ++TFS  P  E  + EE+
Sbjct: 121 KVTFSVPPFAETPLTEEI 138

[Close]

BLAST of IVF0021484 vs. ExPASy TrEMBL
Match: A0A5D3DSC2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00490 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 2.7e-34
Identity = 77/137 (56.20%), Postives = 101/137 (73.72%), Query Frame = 0


Query: 50  MMFMPHPLFDEYSVDRNHISRISLRCFRNALLEGQTYSSMSIHLQEPQNTIIFKFEPSRP 109
           MM MP PLF EYSVDRNHIS +SL    NAL++G+T+++++I ++E QN I   FE S P
Sbjct: 1   MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSP 60

Query: 110 SALPLHHELTF-LPMEDWSPNQVSLNGKLFSIESEMFSNILTTFSVYNEVDTILITSKGS 169
           S LPL+ ELTF +PMEDWSP  V  +GK+FSIESE+F++I+  FS +NE D ILIT+ GS
Sbjct: 61  STLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAILITAFGS 120

Query: 170 QITFSAVPCEEIIIREE 186
           ++TFS  P  E  + EE
Sbjct: 121 KVTFSVPPFAETPLTEE 137

[Close]

BLAST of IVF0021484 vs. ExPASy TrEMBL
Match: A0A5D3DZ07 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1810G00070 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.1e-22
Identity = 67/187 (35.83%), Postives = 104/187 (55.61%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMMFMPHPLFDE 60
           MF +K+ N DP LDATS   +   D   LKF+PS F +IA ++ P F A + +    F  
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQTYSSMSIHLQEPQNTIIFKFEPSRPSALPLHHELTF 120
           +SVD +H S++SL  F +A+L+G +++SM+IHL +  N +I +F+       PLHHELT 
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120

Query: 121 LP--MEDWSPNQVSLN-GKLFSIESEMFSNILTTFSVYNEVDTILITSKGSQITFSAVPC 180
            P   ED    Q  L+  K F ++S+    I+    ++     I +    S++ FS +  
Sbjct: 121 SPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDSIISVDVTNSRVKFS-IAS 180

Query: 181 EEIIIRE 185
           +EII+ E
Sbjct: 181 KEIILTE 186

[Close]

BLAST of IVF0021484 vs. NCBI nr
Match: KGN61523.1 (hypothetical protein Csa_006491 [Cucumis sativus])

HSP 1 Score: 241 bits (616), Expect = 6.99e-79
Identity = 132/192 (68.75%), Postives = 137/192 (71.35%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMMFMPHPLFDE 60
           MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAM+FMPHPLF E
Sbjct: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQTYSSMSIHLQEPQNTIIFKFEPSRPSALPLHHELTF 120
           YSVDRNHISRISLRCFRNALLEGQ+YSSMSIHL+EPQNTI+FKFEPS             
Sbjct: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPS------------- 120

Query: 121 LPMEDWSPNQVSLNGKLFSIESEMFSNILTTFSVYNEVDTILITSKGSQITFSAVPCEEI 180
                                                   ILITS+GSQITFSAVP EEI
Sbjct: 121 ----------------------------------------ILITSRGSQITFSAVPREEI 139

Query: 181 IIREEVCFVKFV 192
           IIREEVCFVKFV
Sbjct: 181 IIREEVCFVKFV 139

[Close]

BLAST of IVF0021484 vs. NCBI nr
Match: XP_031736681.1 (uncharacterized protein LOC116402062 [Cucumis sativus] >XP_031741497.1 uncharacterized protein LOC116403863 [Cucumis sativus])

HSP 1 Score: 228 bits (580), Expect = 9.48e-72
Identity = 114/186 (61.29%), Postives = 144/186 (77.42%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMMFMPHPLFDE 60
           MFSIK+D++DPFLDAT LF E  +DEICLKF PST S+I RY+CP FF  M +P PLF E
Sbjct: 1   MFSIKIDDIDPFLDATILFAELTHDEICLKFLPSTMSIIVRYECPIFFVTMSLPQPLFVE 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQTYSSMSIHLQEPQNTIIFKFEPSRPSALPLHHELTF 120
           YSVDRNHISRISL  F +ALLE QT+++++IHLQE QN I+  FEPS PS LPL+ ELTF
Sbjct: 61  YSVDRNHISRISLLSFYSALLECQTFAALNIHLQEDQNKILLTFEPSSPSTLPLNRELTF 120

Query: 121 L-PMEDWSPNQVSLNGKLFSIESEMFSNILTTFSVYNEVDTILITSKGSQITFSAVPCEE 180
           + PMEDWS  QV+ +GK+FSIES++F +I+  FS + E +TILI S GS+++FS +P  E
Sbjct: 121 VVPMEDWSTAQVNFDGKVFSIESQLFIDIIQLFSSFTEANTILIASFGSKVSFSILPFAE 180

Query: 181 IIIREE 185
             + EE
Sbjct: 181 TPLTEE 186

[Close]

BLAST of IVF0021484 vs. NCBI nr
Match: KGN45637.1 (hypothetical protein Csa_005027 [Cucumis sativus])

HSP 1 Score: 199 bits (507), Expect = 5.90e-62
Identity = 99/161 (61.49%), Postives = 121/161 (75.16%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMMFMPHPLFDE 60
           MFSIK+D LDP LDA SLFT+ +ND+ICLKFS STFS+IARYQ P FFAM+F+P PLF E
Sbjct: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQTYSSMSIHLQEPQNTIIFKFEPSRPSALPLHHELTF 120
           Y V R+HI R+SL     AL  GQTYSS+ IHLQE QN I   FEPSR S +P+  ++ F
Sbjct: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRF 120

Query: 121 -LPMEDWSPNQVSLNGKLFSIESEMFSNILTTFSVYNEVDT 160
            +PMEDWS  ++  + K FSIES++F +I+TTF  YNEVDT
Sbjct: 121 EVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDT 161

[Close]

BLAST of IVF0021484 vs. NCBI nr
Match: KAA0047513.1 (hypothetical protein E6C27_scaffold498G001420 [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (393), Expect = 5.50e-45
Identity = 77/138 (55.80%), Postives = 102/138 (73.91%), Query Frame = 0


Query: 50  MMFMPHPLFDEYSVDRNHISRISLRCFRNALLEGQTYSSMSIHLQEPQNTIIFKFEPSRP 109
           MM MP PLF EYSVDRNHIS +SL    NAL++G+T+++++I ++E QN I   FE S P
Sbjct: 1   MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSP 60

Query: 110 SALPLHHELTFL-PMEDWSPNQVSLNGKLFSIESEMFSNILTTFSVYNEVDTILITSKGS 169
           S LPL+ ELTF+ PMEDWSP  V  +GK+FSIESE+F++I+  FS +NE D ILIT+ GS
Sbjct: 61  STLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAILITAFGS 120

Query: 170 QITFSAVPCEEIIIREEV 186
           ++TFS  P  E  + EE+
Sbjct: 121 KVTFSVPPFAETPLTEEI 138

[Close]

BLAST of IVF0021484 vs. NCBI nr
Match: TYK26483.1 (hypothetical protein E5676_scaffold313G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (391), Expect = 5.16e-41
Identity = 77/137 (56.20%), Postives = 101/137 (73.72%), Query Frame = 0


Query: 50  MMFMPHPLFDEYSVDRNHISRISLRCFRNALLEGQTYSSMSIHLQEPQNTIIFKFEPSRP 109
           MM MP PLF EYSVDRNHIS +SL    NAL++G+T+++++I ++E QN I   FE S P
Sbjct: 1   MMSMPQPLFAEYSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSP 60

Query: 110 SALPLHHELTFL-PMEDWSPNQVSLNGKLFSIESEMFSNILTTFSVYNEVDTILITSKGS 169
           S LPL+ ELTF+ PMEDWSP  V  +GK+FSIESE+F++I+  FS +NE D ILIT+ GS
Sbjct: 61  STLPLNRELTFVVPMEDWSPGPVKFDGKIFSIESELFTDIIQLFSAFNEADAILITAFGS 120

Query: 170 QITFSAVPCEEIIIREE 185
           ++TFS  P  E  + EE
Sbjct: 121 KVTFSVPPFAETPLTEE 137

The following BLAST results are available for this feature:

BLAST of IVF0021484 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0021484 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIE0	2.2e-60	68.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G155090 PE=4 SV=1	[more]
A0A0A0KB76	1.6e-47	61.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002310 PE=4 SV=1	[more]
A0A5A7TVD7	1.6e-34	55.80	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DSC2	2.7e-34	56.20	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DZ07	4.1e-22	35.83	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of IVF0021484 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61523.1	6.99e-79	68.75	hypothetical protein Csa_006491 [Cucumis sativus]	[more]
XP_031736681.1	9.48e-72	61.29	uncharacterized protein LOC116402062 [Cucumis sativus] >XP_031741497.1 uncharact...	[more]
KGN45637.1	5.90e-62	61.49	hypothetical protein Csa_005027 [Cucumis sativus]	[more]
KAA0047513.1	5.50e-45	55.80	hypothetical protein E6C27_scaffold498G001420 [Cucumis melo var. makuwa]	[more]
TYK26483.1	5.16e-41	56.20	hypothetical protein E5676_scaffold313G00490 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0021484 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.70.10.10		coord: 1..187 e-value: 5.3E-14 score: 54.2
None	No IPR available	SUPERFAMILY	55979	DNA clamp	coord: 1..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0021484.2	IVF0021484.2	mRNA