IVF0021408 (gene) Melon (IVF77) v1

Overview


Name	IVF0021408
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Calcium-binding EF-hand family protein
Location	chr03: 478139 .. 478351 (-)
RNA-Seq Expression	IVF0021408
Synteny	IVF0021408

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCAAAATCATAATACCTCAAGTAGAGTGGATGAAGGGTATGAAGACTTGTTGCCGGTGATGGCACAGAAGCTCGACGTCGAGGTGTTTGTGTCTGAGCTTTGCAGCGGTTTTCGGCTGCTTGCTGATGCAACGAAAGGGCTGATTACTGCAGAGAGTTTACGGCGAAATTCAGCGCTGTTAGGAATGGAAGGGATAAATAATAATTGA

mRNA sequence

ATGGATCAAAATCATAATACCTCAAGTAGAGTGGATGAAGGGTATGAAGACTTGTTGCCGGTGATGGCACAGAAGCTCGACGTCGAGGTGTTTGTGTCTGAGCTTTGCAGCGGTTTTCGGCTGCTTGCTGATGCAACGAAAGGGCTGATTACTGCAGAGAGTTTACGGCGAAATTCAGCGCTGTTAGGAATGGAAGGGATAAATAATAATTGA

Coding sequence (CDS)

ATGGATCAAAATCATAATACCTCAAGTAGAGTGGATGAAGGGTATGAAGACTTGTTGCCGGTGATGGCACAGAAGCTCGACGTCGAGGTGTTTGTGTCTGAGCTTTGCAGCGGTTTTCGGCTGCTTGCTGATGCAACGAAAGGGCTGATTACTGCAGAGAGTTTACGGCGAAATTCAGCGCTGTTAGGAATGGAAGGGATAAATAATAATTGA

Protein sequence

MDQNHNTSSRVDEGYEDLLPVMAQKLDVEVFVSELCSGFRLLADATKGLITAESLRRNSALLGMEGINNN

Homology

[Close]

BLAST of IVF0021408 vs. ExPASy Swiss-Prot
Match: Q9ZPX9 (Calcium-binding protein KIC OS=Arabidopsis thaliana OX=3702 GN=KIC PE=1 SV=2)

HSP 1 Score: 84.0 bits (206), Expect = 7.6e-16
Identity = 39/62 (62.90%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 7  TSSRVDEGYEDLLPVMAQKLDVEVFVSELCSGFRLLADATKGLITAESLRRNSALLGMEG 66
          ++++++  YED+LPVMA+K+DVE FVSELC GF LLAD  + LITAESLRRNS +LG+EG
Sbjct: 14 STTKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEG 73

Query: 67 IN 69
          ++
Sbjct: 74 MS 75

[Close]

BLAST of IVF0021408 vs. ExPASy Swiss-Prot
Match: O81831 (Calcium-binding protein KRP1 OS=Arabidopsis thaliana OX=3702 GN=KRP1 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.9e-07
Identity = 29/59 (49.15%), Postives = 36/59 (61.02%), Query Frame = 0


Query: 7  TSSRVDEGYEDLLPVMAQKLDVEVFVSELCSGFRLLADATKGLITAESLRRN-SALLGM 65
          T       + D LP MA  L  E  + ELC+GF LL D  KG+IT ESLRRN +A+LG+
Sbjct: 11 TQQNPQPNFHDFLPTMAGNLGGEGLIGELCNGFELLMDREKGVITFESLRRNAAAVLGL 69

[Close]

BLAST of IVF0021408 vs. ExPASy Swiss-Prot
Match: Q9LSQ6 (Calcium-binding protein PBP1 OS=Arabidopsis thaliana OX=3702 GN=PBP1 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.4e-06
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 0


Query: 15 YEDLLPVMAQKLDVEVFVSELCSGFRLLADATKGLITAESLRRN-SALLGMEGINNN 71
          ++D  P MA KL  E  + E+C GF LL D  KG+IT ESLRRN S +LG+  + ++
Sbjct: 19 FQDFFPTMAGKLGGEGLIEEICKGFELLMDKDKGVITFESLRRNASTVLGLGDLTDD 75

[Close]

BLAST of IVF0021408 vs. ExPASy TrEMBL
Match: A0A5A7TCH3 (Calcium-binding EF-hand family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G00290 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 8.1e-29
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MDQNHNTSSRVDEGYEDLLPVMAQKLDVEVFVSELCSGFRLLADATKGLITAESLRRNSA 60
          MDQNHNTSSRVDEGYEDLLPVMAQKLDVEVFVSELCSGFRLLADATKGLITAESLRRNSA
Sbjct: 1  MDQNHNTSSRVDEGYEDLLPVMAQKLDVEVFVSELCSGFRLLADATKGLITAESLRRNSA 60

Query: 61 LLGMEGINNN 71
          LLGMEG+N N
Sbjct: 61 LLGMEGMNEN 70

[Close]

BLAST of IVF0021408 vs. ExPASy TrEMBL
Match: A0A0A0KAP2 (EF-hand domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G106800 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.3e-26
Identity = 66/71 (92.96%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MDQNHNTSSRV-DEGYEDLLPVMAQKLDVEVFVSELCSGFRLLADATKGLITAESLRRNS 60
          MDQNHNTS RV DEGYEDLLPVMAQKLDVEVFV+ELCSGFRLLADATKGLITAESLRRNS
Sbjct: 1  MDQNHNTSGRVLDEGYEDLLPVMAQKLDVEVFVAELCSGFRLLADATKGLITAESLRRNS 60

Query: 61 ALLGMEGINNN 71
          ALLGMEG+N N
Sbjct: 61 ALLGMEGMNEN 71

[Close]

BLAST of IVF0021408 vs. ExPASy TrEMBL
Match: A0A6J1KWH6 (calcium-binding protein KIC OS=Cucurbita maxima OX=3661 GN=LOC111499333 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.1e-22
Identity = 58/67 (86.57%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MDQNHNTSSRVDEGYEDLLPVMAQKLDVEVFVSELCSGFRLLADATKGLITAESLRRNSA 60
          MDQN +TSSRV E YEDLLP+MAQKLDVEVFV+ELCSGFRLLADA+KG+ITAESLRRNSA
Sbjct: 1  MDQNQHTSSRVVEEYEDLLPLMAQKLDVEVFVAELCSGFRLLADASKGVITAESLRRNSA 60

Query: 61 LLGMEGI 68
          LLGMEG+
Sbjct: 61 LLGMEGM 67

[Close]

BLAST of IVF0021408 vs. ExPASy TrEMBL
Match: A0A6J1H361 (calcium-binding protein KIC OS=Cucurbita moschata OX=3662 GN=LOC111459966 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.5e-22
Identity = 58/67 (86.57%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MDQNHNTSSRVDEGYEDLLPVMAQKLDVEVFVSELCSGFRLLADATKGLITAESLRRNSA 60
          MDQN +TSSRV E YEDLLPVMAQKLDVEVFV+ELCSGFRLLADA+KG+ITAESLR+NSA
Sbjct: 1  MDQNQHTSSRVVEEYEDLLPVMAQKLDVEVFVAELCSGFRLLADASKGVITAESLRQNSA 60

Query: 61 LLGMEGI 68
          LLGMEG+
Sbjct: 61 LLGMEGM 67

[Close]

BLAST of IVF0021408 vs. ExPASy TrEMBL
Match: A0A067JWV1 (EF-hand domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_14222 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.1e-17
Identity = 51/67 (76.12%), Postives = 57/67 (85.07%), Query Frame = 0


Query: 2  DQNHNTSSRVDEGYEDLLPVMAQKLDVEVFVSELCSGFRLLADATKGLITAESLRRNSAL 61
          DQ  NTS RV   YEDLLPVMA+KLDV+ FVSELC+GFRLLAD  KGLIT+ESLRRNSA 
Sbjct: 4  DQIGNTSRRV---YEDLLPVMAEKLDVDEFVSELCAGFRLLADPEKGLITSESLRRNSAF 63

Query: 62 LGMEGIN 69
          LGMEG++
Sbjct: 64 LGMEGMS 67

[Close]

BLAST of IVF0021408 vs. NCBI nr
Match: KAA0039766.1 (Calcium-binding EF-hand family protein [Cucumis melo var. makuwa])

HSP 1 Score: 134 bits (337), Expect = 1.03e-38
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MDQNHNTSSRVDEGYEDLLPVMAQKLDVEVFVSELCSGFRLLADATKGLITAESLRRNSA 60
          MDQNHNTSSRVDEGYEDLLPVMAQKLDVEVFVSELCSGFRLLADATKGLITAESLRRNSA
Sbjct: 1  MDQNHNTSSRVDEGYEDLLPVMAQKLDVEVFVSELCSGFRLLADATKGLITAESLRRNSA 60

Query: 61 LLGMEGINNN 70
          LLGMEG+N N
Sbjct: 61 LLGMEGMNEN 70

[Close]

BLAST of IVF0021408 vs. NCBI nr
Match: XP_004140505.1 (calcium-binding protein KIC [Cucumis sativus] >KGN46528.1 hypothetical protein Csa_005589 [Cucumis sativus])

HSP 1 Score: 127 bits (318), Expect = 8.35e-36
Identity = 66/71 (92.96%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MDQNHNTSSRV-DEGYEDLLPVMAQKLDVEVFVSELCSGFRLLADATKGLITAESLRRNS 60
          MDQNHNTS RV DEGYEDLLPVMAQKLDVEVFV+ELCSGFRLLADATKGLITAESLRRNS
Sbjct: 1  MDQNHNTSGRVLDEGYEDLLPVMAQKLDVEVFVAELCSGFRLLADATKGLITAESLRRNS 60

Query: 61 ALLGMEGINNN 70
          ALLGMEG+N N
Sbjct: 61 ALLGMEGMNEN 71

[Close]

BLAST of IVF0021408 vs. NCBI nr
Match: KAG6575248.1 (Calcium-binding protein KIC, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115 bits (288), Expect = 2.99e-31
Identity = 59/67 (88.06%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MDQNHNTSSRVDEGYEDLLPVMAQKLDVEVFVSELCSGFRLLADATKGLITAESLRRNSA 60
          MDQN +TSSRV E YEDLLPVMAQKLDVEVFV+ELCSGFRLLADA+KG+ITAESLRRNSA
Sbjct: 1  MDQNQHTSSRVVEEYEDLLPVMAQKLDVEVFVAELCSGFRLLADASKGVITAESLRRNSA 60

Query: 61 LLGMEGI 67
          LLGMEG+
Sbjct: 61 LLGMEGM 67

[Close]

BLAST of IVF0021408 vs. NCBI nr
Match: XP_023547367.1 (calcium-binding protein KIC [Cucurbita pepo subsp. pepo])

HSP 1 Score: 115 bits (288), Expect = 2.99e-31
Identity = 59/67 (88.06%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MDQNHNTSSRVDEGYEDLLPVMAQKLDVEVFVSELCSGFRLLADATKGLITAESLRRNSA 60
          MDQN +TSSRV E YEDLLPVMAQKLDVEVFV+ELCSGFRLLADA+KG+ITAESLRRNSA
Sbjct: 1  MDQNQHTSSRVVEEYEDLLPVMAQKLDVEVFVAELCSGFRLLADASKGVITAESLRRNSA 60

Query: 61 LLGMEGI 67
          LLGMEG+
Sbjct: 61 LLGMEGM 67

[Close]

BLAST of IVF0021408 vs. NCBI nr
Match: XP_038875235.1 (calcium-binding protein KIC [Benincasa hispida])

HSP 1 Score: 114 bits (286), Expect = 5.68e-31
Identity = 57/68 (83.82%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 1  MDQNHNTSSRVDEGYEDLLPVMAQKLDVEVFVSELCSGFRLLADATKGLITAESLRRNSA 60
          MDQN++TSS VDE YEDL PVMAQKLDVE+FV+ELCSGFRLL+D  KGLITAESLRRNSA
Sbjct: 1  MDQNNDTSSGVDEAYEDLFPVMAQKLDVEMFVAELCSGFRLLSDTAKGLITAESLRRNSA 60

Query: 61 LLGMEGIN 68
          LLGMEG+N
Sbjct: 61 LLGMEGMN 68

[Close]

BLAST of IVF0021408 vs. TAIR 10
Match: AT2G46600.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 84.0 bits (206), Expect = 5.4e-17
Identity = 39/62 (62.90%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 7  TSSRVDEGYEDLLPVMAQKLDVEVFVSELCSGFRLLADATKGLITAESLRRNSALLGMEG 66
          ++++++  YED+LPVMA+K+DVE FVSELC GF LLAD  + LITAESLRRNS +LG+EG
Sbjct: 14 STTKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEG 73

Query: 67 IN 69
          ++
Sbjct: 74 MS 75

[Close]

BLAST of IVF0021408 vs. TAIR 10
Match: AT4G27280.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 54.7 bits (130), Expect = 3.5e-08
Identity = 29/59 (49.15%), Postives = 36/59 (61.02%), Query Frame = 0


Query: 7  TSSRVDEGYEDLLPVMAQKLDVEVFVSELCSGFRLLADATKGLITAESLRRN-SALLGM 65
          T       + D LP MA  L  E  + ELC+GF LL D  KG+IT ESLRRN +A+LG+
Sbjct: 11 TQQNPQPNFHDFLPTMAGNLGGEGLIGELCNGFELLMDREKGVITFESLRRNAAAVLGL 69

[Close]

BLAST of IVF0021408 vs. TAIR 10
Match: AT5G54490.1 (pinoid-binding protein 1 )

HSP 1 Score: 53.1 bits (126), Expect = 1.0e-07
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 0


Query: 15 YEDLLPVMAQKLDVEVFVSELCSGFRLLADATKGLITAESLRRN-SALLGMEGINNN 71
          ++D  P MA KL  E  + E+C GF LL D  KG+IT ESLRRN S +LG+  + ++
Sbjct: 19 FQDFFPTMAGKLGGEGLIEEICKGFELLMDKDKGVITFESLRRNASTVLGLGDLTDD 75

The following BLAST results are available for this feature:

BLAST of IVF0021408 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZPX9	7.6e-16	62.90	Calcium-binding protein KIC OS=Arabidopsis thaliana OX=3702 GN=KIC PE=1 SV=2	[more]
O81831	4.9e-07	49.15	Calcium-binding protein KRP1 OS=Arabidopsis thaliana OX=3702 GN=KRP1 PE=2 SV=1	[more]
Q9LSQ6	1.4e-06	47.37	Calcium-binding protein PBP1 OS=Arabidopsis thaliana OX=3702 GN=PBP1 PE=1 SV=1	[more]

BLAST of IVF0021408 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TCH3	8.1e-29	97.14	Calcium-binding EF-hand family protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A0A0KAP2	1.3e-26	92.96	EF-hand domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G106800 PE=...	[more]
A0A6J1KWH6	1.1e-22	86.57	calcium-binding protein KIC OS=Cucurbita maxima OX=3661 GN=LOC111499333 PE=4 SV=...	[more]
A0A6J1H361	1.5e-22	86.57	calcium-binding protein KIC OS=Cucurbita moschata OX=3662 GN=LOC111459966 PE=4 S...	[more]
A0A067JWV1	7.1e-17	76.12	EF-hand domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_14222 PE=...	[more]

BLAST of IVF0021408 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039766.1	1.03e-38	97.14	Calcium-binding EF-hand family protein [Cucumis melo var. makuwa]	[more]
XP_004140505.1	8.35e-36	92.96	calcium-binding protein KIC [Cucumis sativus] >KGN46528.1 hypothetical protein C...	[more]
KAG6575248.1	2.99e-31	88.06	Calcium-binding protein KIC, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023547367.1	2.99e-31	88.06	calcium-binding protein KIC [Cucurbita pepo subsp. pepo]	[more]
XP_038875235.1	5.68e-31	83.82	calcium-binding protein KIC [Benincasa hispida]	[more]

BLAST of IVF0021408 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46600.1	5.4e-17	62.90	Calcium-binding EF-hand family protein	[more]
AT4G27280.1	3.5e-08	49.15	Calcium-binding EF-hand family protein	[more]
AT5G54490.1	1.0e-07	47.37	pinoid-binding protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.238.10		coord: 13..70 e-value: 2.6E-5 score: 26.0
None	No IPR available	PANTHER	PTHR47319:SF4	CALCIUM-BINDING PROTEIN KIC	coord: 3..69
IPR044205	Calcium-binding protein KIC/PBP1/KRP1	PANTHER	PTHR47319	CALCIUM-BINDING PROTEIN KIC	coord: 3..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0021408.2	IVF0021408.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding