IVF0021398 (gene) Melon (IVF77) v1

Overview


Name	IVF0021398
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr04: 23408357 .. 23408545 (-)
RNA-Seq Expression	IVF0021398
Synteny	IVF0021398

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGATTAAACGACATAAATAAAGAATTGAAAAATAAGAAAGATGATGGAAAGAAATCGCAGAAAAGAAAAAGAGAAAAGAAGAAAGACGAAATCATAGGAGAACACGGGGAAGACGAAATAACAGGAGGAAGACGAACCGCGAGGAAGAAAAGAAAAATGGAAGGGCAAAACTGGAATATTTAA

mRNA sequence

ATGGAAAGATTAAACGACATAAATAAAGAATTGAAAAATAAGAAAGATGATGGAAAGAAATCGCAGAAAAGAAAAAGAGAAAAGAAGAAAGACGAAATCATAGGAGAACACGGGGAAGACGAAATAACAGGAGGAAGACGAACCGCGAGGAAGAAAAGAAAAATGGAAGGGCAAAACTGGAATATTTAA

Coding sequence (CDS)

ATGGAAAGATTAAACGACATAAATAAAGAATTGAAAAATAAGAAAGATGATGGAAAGAAATCGCAGAAAAGAAAAAGAGAAAAGAAGAAAGACGAAATCATAGGAGAACACGGGGAAGACGAAATAACAGGAGGAAGACGAACCGCGAGGAAGAAAAGAAAAATGGAAGGGCAAAACTGGAATATTTAA

Protein sequence

MERLNDINKELKNKKDDGKKSQKRKREKKKDEIIGEHGEDEITGGRRTARKKRKMEGQNWNI

Homology

[Close]

BLAST of IVF0021398 vs. ExPASy TrEMBL
Match: A0A5A7SVQ8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00530 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.3e-06
Identity = 30/44 (68.18%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 19 KKSQKRKREKKKDEIIGEHGEDEITGGRRTARKKRKMEGQNWNI 63
          ++++K+++E KKDEI GE G+DEITGGRR ARK RKMEGQ WNI
Sbjct: 3  ERNRKKEKENKKDEIAGEDGKDEITGGRRIARKNRKMEGQTWNI 46

[Close]

BLAST of IVF0021398 vs. NCBI nr
Match: KAA0033511.1 (hypothetical protein E6C27_scaffold261G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 7.15e-09
Identity = 30/42 (71.43%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 21 SQKRKREKKKDEIIGEHGEDEITGGRRTARKKRKMEGQNWNI 62
          ++K+++E KKDEI GE G+DEITGGRR ARK RKMEGQ WNI
Sbjct: 5  NRKKEKENKKDEIAGEDGKDEITGGRRIARKNRKMEGQTWNI 46

[Close]

BLAST of IVF0021398 vs. NCBI nr
Match: KAA0057036.1 (hypothetical protein E6C27_scaffold96G002220 [Cucumis melo var. makuwa])

HSP 1 Score: 48.1 bits (113), Expect = 7.03e-05
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 1  MERLNDINKELKNKKDDGKKSQKRKREKKKDEIIGEHGEDEITGGRR 47
          MERLNDINKELKNKKD  +  +K K++KKK+EI GE   DEI GGR+
Sbjct: 1  MERLNDINKELKNKKDMERNRRKEKQKKKKEEITGE---DEIRGGRK 44

The following BLAST results are available for this feature:

BLAST of IVF0021398 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0021398 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SVQ8	1.3e-06	68.18	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0021398 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033511.1	7.15e-09	71.43	hypothetical protein E6C27_scaffold261G00530 [Cucumis melo var. makuwa]	[more]
KAA0057036.1	7.03e-05	65.96	hypothetical protein E6C27_scaffold96G002220 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0021398 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0021398.2	IVF0021398.2	mRNA