IVF0021380 (gene) Melon (IVF77) v1

Overview
NameIVF0021380
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Locationchr08: 15904870 .. 15906937 (+)
RNA-Seq ExpressionIVF0021380
SyntenyIVF0021380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAAAATTCTAAAAAAATTTCTAGTAGAACACTTGATTCTAATTCTTCTTCATCTTATGATAATTCTGTTAAAGAACAAGTGAATTTACTAACTAAACTTTTTGCTTCTTTTGTGAAGGGGGAGGTTCCTAAAGTTGTCTCTTGTGGAGTCTGTGGCTTGCTAGGCCACCACAATGATCAATGCCCAAAGATTAAAGAGGTAAGTGCCATGGGAGGTTATAGAAGAAAGGATAAACAGAATAACACATACAACTTTGGATGGAGGGACGATCCAAATCTTAGTTGCGTCCCTTAAGAACCAAAACCTACCAACATTTCTTCTTCCTCATCATCAACACAAGGTACGTACTTAGAGGAGATCATCTCCAAGTTAACTCTTAGCTTAAATAGTTTTAAAACTAATTTTGAGAAAAACATAGTTAAGTTCATTAAGCAAATTATTAATTCAACTGGAGCCATGAAAAATGATATAGAAACCATGAAAGCATCCATTTTCGAGTTATGAGATAAGCTTAATCAATTAGCAATACACGTTCTTAAAACAAAAGGGAAAGACAAACTTTCCGCCCAACCCAACCATGCGAATGCGAGTGCTATTACTTTAAGAAGTGACAAAATTTTGAATAAGAATGATGATGTCCCTTTGTCTCAAAATGATCATAACTTACAGAATGTTGATTCAAATGCCAAAGAAGAAAAGAAGGTACAAACTAACACCTTTTTTCTAATGCTTCTTCTTCTAATAATGATTCAAAGTACATTGTTGATAATATTCTATCTCCATTTCCTTCTATGTTATCTCAACCAAGGAAGGAATTCAAGAATGACGAAGAACTCCTTGAAGTCTTCAAGAAGGTAGAAGTAAACTTACCCCTCTTGACGACAATCAAGAGCATACCAAGGTATGCAAAGTTTTTTAAGGAGTTATGTACTCACAAGAGGAGGAGTAGGAGCCAAGAAAAAGTAATGGTTAGTAAAAATGTGTCTTCCCTTTTAAAGAAGAATCTTCTAGTAAAATGTGTCGACCTAGGTATCTTTTCGCTCCCTTGAACAATAGGAAATTTAGACATATCTAGTGTAATACTTGATCTAGGTTCATCCATTAATGTCATGCATTTTAGCGTTGTTAAAGACTTCAGATTGAATGGACTTGAAAAGACTAGTATTTATATACACTTAGCCAATCGATCTTTCATTTCACCATTACGGGTTGTAGAAGATGTCCTAGTTAAGGTAGAAAATCTAATGTTCCAATGCGGATTTTTACATAATGGAAACGAATAATGAATATGCACGTACATCTCCTACCATACTTTTAGGAAGATCATTCTTGAAAATTGCTATGGCCATAATTAATGTGGAGAAAGGTCTTCTTGGTGTCGAGTTTGATGGTGATATAATGTCTTTCAACATTTTTTATGATGTAAAGTCCTCTAATGATCATGTTTCATTATGTACACTTGATACTTTAGAATCATTAAAGACACTAGAAGAGCATGATAAATTAATGAGATTATTGATCAAACAACTTTAGAATATGTTGAAAATGATCTTAATTTTGAGATTTTAGATGGATTTAATAATTATTTTGTTCATGAGAACCTTGATGAAAGATTTGACATGATTGACAATTCTCTAGATAATCGTGTATAATGACTTGAACTTTTAAATTAAGTTAAGGTCATTACTCAAAAAGACAAATAACAAATTACACTTCCTTGAAGAGACAAACGACTAAAATTCTTATAAAATCAGATCTTCACAAAATGTAAGATTATCAAAACCAACAAAAATAATTTGAAAAAATGACCCGCGGGTTCTAACAATTTTAAAAAAAATAAAAATAAATAGGTCAAAATTTTAAGTAAAATGTTAAAAATTTAAAATACTAAAAAAACACTTAAATAGACGTGAAAGCTAGCTATTTCCCCTTATGGCATGCCACGGATTCCTTTCTATCGCTCACCGGCTTCTCAAGTTCTCTACCTTAGCCTAAAATATTAAACATAGAAAAGAGTGAGTATATAAATATACCCAGTAAGACCCACTACTGGTCCCGCTAA

mRNA sequence

ATGGCCAAAAATTCTAAAAAAATTTCTAGTAGAACACTTGATTCTAATTCTTCTTCATCTTATGATAATTCTGTTAAAGAACAAGTGAATTTACTAACTAAACTTTTTGCTTCTTTTGTGAAGGGGGAGGTTCCTAAAGTTGTCTCTTGTGGAGTCTGTGGCTTGCTAGGCCACCACAATGATCAATGCCCAAAGATTAAAGAGGTAAGTGCCATGGGAGGTTATAGAAGAAAGGATAAACAGAATAACACATACAACTTTGGATGGAGGGACGATCCAAATCTTAGTACGTACTTAGAGGAGATCATCTCCAAGTTAACTCTTAGCTTAAATAGTTTTAAAACTAATTTTGAGAAAAACATAGTTAAGTTCATTAAGCAAATTATTAATTCAACTGGACTTAATCAATTAGCAATACACGTTCTTAAAACAAAAGGGAAAGACAAACTTTCCGCCCAACCCAACCATGCGAATGCGAGTGCTATTACTTTAAGAAGTGACAAAATTTTGAATAAGAATGATGATGTCCCTTTTAAGACCCACTACTGGTCCCGCTAA

Coding sequence (CDS)

ATGGCCAAAAATTCTAAAAAAATTTCTAGTAGAACACTTGATTCTAATTCTTCTTCATCTTATGATAATTCTGTTAAAGAACAAGTGAATTTACTAACTAAACTTTTTGCTTCTTTTGTGAAGGGGGAGGTTCCTAAAGTTGTCTCTTGTGGAGTCTGTGGCTTGCTAGGCCACCACAATGATCAATGCCCAAAGATTAAAGAGGTAAGTGCCATGGGAGGTTATAGAAGAAAGGATAAACAGAATAACACATACAACTTTGGATGGAGGGACGATCCAAATCTTAGTACGTACTTAGAGGAGATCATCTCCAAGTTAACTCTTAGCTTAAATAGTTTTAAAACTAATTTTGAGAAAAACATAGTTAAGTTCATTAAGCAAATTATTAATTCAACTGGACTTAATCAATTAGCAATACACGTTCTTAAAACAAAAGGGAAAGACAAACTTTCCGCCCAACCCAACCATGCGAATGCGAGTGCTATTACTTTAAGAAGTGACAAAATTTTGAATAAGAATGATGATGTCCCTTTTAAGACCCACTACTGGTCCCGCTAA

Protein sequence

MAKNSKKISSRTLDSNSSSSYDNSVKEQVNLLTKLFASFVKGEVPKVVSCGVCGLLGHHNDQCPKIKEVSAMGGYRRKDKQNNTYNFGWRDDPNLSTYLEEIISKLTLSLNSFKTNFEKNIVKFIKQIINSTGLNQLAIHVLKTKGKDKLSAQPNHANASAITLRSDKILNKNDDVPFKTHYWSR
Homology
BLAST of IVF0021380 vs. ExPASy TrEMBL
Match: A0A0A0KEQ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G295940 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 2.1e-52
Identity = 116/191 (60.73%), Postives = 132/191 (69.11%), Query Frame = 0

Query: 16  NSSSSYDNSVKEQVNLLTKLFASFVKGEVPKVVSCGVCGLLGHHNDQCPKIKEVSAMGGY 75
           NSS S DNSVKEQVNLLTK+F SFVKGEVPKVVSCGVCGLLGHHNDQCP+IKEVSA+GGY
Sbjct: 2   NSSLSCDNSVKEQVNLLTKMFTSFVKGEVPKVVSCGVCGLLGHHNDQCPEIKEVSALGGY 61

Query: 76  RRKDKQNNTYNFGWRDDPNL-------------------STYLEEIISKLTLSLNSFKTN 135
           RR D Q+N YN GWRDDP+L                    TYLEEI+SKL  S N+FK++
Sbjct: 62  RRNDSQSNAYNSGWRDDPSLRWGPQEPKHNNTPSTSSSKGTYLEEIVSKLAFSSNNFKSD 121

Query: 136 FEKNIVKFIKQIINSTG-------------------LNQLAIHVLKTKGKDKLSAQPNHA 169
           FEKN+ K  +  ++STG                   L+QLAI  LKT+GK KL AQPNHA
Sbjct: 122 FEKNLAKLSEYTVSSTGAIKNDVENMKASISELGNKLDQLAIQFLKTEGKGKLPAQPNHA 181

BLAST of IVF0021380 vs. ExPASy TrEMBL
Match: A0A5D3CW21 (Retrovirus-related Pol polyprotein from transposon 297 family OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00170 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.0e-34
Identity = 77/95 (81.05%), Postives = 86/95 (90.53%), Query Frame = 0

Query: 1  MAKNSKKISSRTLDSNSSSSYDNSVKEQVNLLTKLFASFVKGEVPKVVSCGVCGLLGHHN 60
          MA+NSKKISSRTLDSN+SSSYDNSV+EQVNLLTKLFASFVKG+VPKVVSCGV GLLGHHN
Sbjct: 1  MAENSKKISSRTLDSNNSSSYDNSVEEQVNLLTKLFASFVKGKVPKVVSCGVYGLLGHHN 60

Query: 61 DQCPKIKEVSAMGGYRRKDKQNNTYNFGWRDDPNL 96
          DQ P++KE+SAM G+RR D  +NTYN  WRD PNL
Sbjct: 61 DQYPELKEISAMEGFRRNDSHSNTYNSYWRDHPNL 95

BLAST of IVF0021380 vs. ExPASy TrEMBL
Match: A0A5D3CB46 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold544G00170 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.5e-21
Identity = 74/191 (38.74%), Postives = 101/191 (52.88%), Query Frame = 0

Query: 1   MAKNSKKISSRTLD-SNSSSSYDNSVKEQVNLLTKLFASFVKGEVPKVVSCGVCGLLGHH 60
           MA+NS+   +R  +  NS +   + +K Q+  +T L  SFV+G  PKV  CGVCGL+GH 
Sbjct: 74  MAENSESFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGTPPKVTKCGVCGLVGHP 133

Query: 61  NDQCPKIKEVSAMGGYRRKDKQNNTYNFGWRDDPNL-------------------STYLE 120
           ND+CPK+  +  +   RR D  +NTYN GWRD+ NL                    T LE
Sbjct: 134 NDKCPKV--IEDVNIVRRYDPHSNTYNSGWRDNLNLRWGNDNQKYTQAPSTSSNQGTNLE 193

Query: 121 EIISKLTLSLNSFKTNFEKNIVKFIKQIINSTGLNQLAIHVLKTKGKDKLSAQPNHANAS 172
           +II  L  +  SF+   ++              + QL   + K  GK KL AQP+HAN S
Sbjct: 194 DIIKALATNTLSFQQKMKQQ-------------MTQLTTAISKMDGKGKLPAQPDHANVS 249

BLAST of IVF0021380 vs. ExPASy TrEMBL
Match: A0A5A7U6X0 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold678G00210 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 7.4e-21
Identity = 66/159 (41.51%), Postives = 85/159 (53.46%), Query Frame = 0

Query: 32  LTKLFASFVKGEVPKVVSCGVCGLLGHHNDQCPKIKEVSAMGGYRRKDKQNNTYNFGWRD 91
           +T L  SFV+G   KV  CGVCGL+GH ND+CPK+  +  +  +RR D   NTYN GWRD
Sbjct: 1   MTSLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPKM--IEDVNIFRRYDPHGNTYNSGWRD 60

Query: 92  DPNL-------------------STYLEEIISKLTLSLNSFKTNFEKNIVKFIKQIINST 151
           +PNL                    T LE+II  L  +  SF+   ++             
Sbjct: 61  NPNLRWGNDNQKHTQAPPTSSNQCTNLEDIIKALATNTLSFEQEMKQQ------------ 120

Query: 152 GLNQLAIHVLKTKGKDKLSAQPNHANASAITLRSDKILN 172
            + QL   + K  GK KLSAQP+HAN SAI+LRS KIL+
Sbjct: 121 -MTQLTTAISKMDGKGKLSAQPDHANVSAISLRSGKILD 144

BLAST of IVF0021380 vs. ExPASy TrEMBL
Match: A0A5A7V0Q7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00020 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 3.7e-20
Identity = 72/191 (37.70%), Postives = 100/191 (52.36%), Query Frame = 0

Query: 1   MAKNSKKISSRTLD-SNSSSSYDNSVKEQVNLLTKLFASFVKGEVPKVVSCGVCGLLGHH 60
           M +NS+   +R  +  NS +   + +K Q+  +T L  SFV+G  PKV  CGVCGL+GH 
Sbjct: 137 MVENSQSFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGTPPKVTKCGVCGLVGHP 196

Query: 61  NDQCPKIKEVSAMGGYRRKDKQNNTYNFGWRDDPNL-------------------STYLE 120
           ND+C  +K +  +   RR D  +NTYN GWRD+PNL                    T LE
Sbjct: 197 NDKC--LKVIEDVNIVRRYDPHSNTYNSGWRDNPNLRWGNDNQKHTQAPSTSSNQGTNLE 256

Query: 121 EIISKLTLSLNSFKTNFEKNIVKFIKQIINSTGLNQLAIHVLKTKGKDKLSAQPNHANAS 172
           +II  L  +  SF+   ++              + QL   + K  GK KL AQP++AN S
Sbjct: 257 DIIKALGTNTLSFQQEMKQQ-------------MTQLTTAISKMDGKGKLPAQPDYANVS 312

BLAST of IVF0021380 vs. NCBI nr
Match: KAE8647060.1 (hypothetical protein Csa_022980 [Cucumis sativus])

HSP 1 Score: 243 bits (621), Expect = 5.26e-72
Identity = 133/216 (61.57%), Postives = 152/216 (70.37%), Query Frame = 0

Query: 1   MAKNSKKIS-SRTLDSNSSSSYDNSVKEQVNLLTKLFASFVKGEVPKVVSCGVCGLLGHH 60
           MAKNS+  + SRTLD NSS S DNSVKEQVNLLTK+F SFVKGEVPKVVSCGVCGLLGHH
Sbjct: 148 MAKNSQNFTTSRTLDMNSSLSCDNSVKEQVNLLTKMFTSFVKGEVPKVVSCGVCGLLGHH 207

Query: 61  NDQCPKIKEVSAMGGYRRKDKQNNTYNFGWRDDPNL-------------------STYLE 120
           NDQCP+IKEVSA+GGYRR D Q+N YN GWRDDP+L                    TYLE
Sbjct: 208 NDQCPEIKEVSALGGYRRNDSQSNAYNSGWRDDPSLRWGPQEPKHNNTPSTSSSKGTYLE 267

Query: 121 EIISKLTLSLNSFKTNFEKNIVKFIKQIINSTG-------------------LNQLAIHV 177
           EI+SKL  S N+FK++FEKN+ K  +  ++STG                   L+QLAI  
Sbjct: 268 EIVSKLAFSSNNFKSDFEKNLAKLSEYTVSSTGAIKNDVENMKASISELGNKLDQLAIQF 327

BLAST of IVF0021380 vs. NCBI nr
Match: KAA0042324.1 (Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var. makuwa] >TYK15448.1 Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (393), Expect = 5.38e-42
Identity = 77/95 (81.05%), Postives = 86/95 (90.53%), Query Frame = 0

Query: 1  MAKNSKKISSRTLDSNSSSSYDNSVKEQVNLLTKLFASFVKGEVPKVVSCGVCGLLGHHN 60
          MA+NSKKISSRTLDSN+SSSYDNSV+EQVNLLTKLFASFVKG+VPKVVSCGV GLLGHHN
Sbjct: 1  MAENSKKISSRTLDSNNSSSYDNSVEEQVNLLTKLFASFVKGKVPKVVSCGVYGLLGHHN 60

Query: 61 DQCPKIKEVSAMGGYRRKDKQNNTYNFGWRDDPNL 95
          DQ P++KE+SAM G+RR D  +NTYN  WRD PNL
Sbjct: 61 DQYPELKEISAMEGFRRNDSHSNTYNSYWRDHPNL 95

BLAST of IVF0021380 vs. NCBI nr
Match: TYK07549.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (285), Expect = 4.16e-27
Identity = 74/190 (38.95%), Postives = 100/190 (52.63%), Query Frame = 0

Query: 1   MAKNSKKISSRTLD-SNSSSSYDNSVKEQVNLLTKLFASFVKGEVPKVVSCGVCGLLGHH 60
           MA+NS+   +R  +  NS +   + +K Q+  +T L  SFV+G  PKV  CGVCGL+GH 
Sbjct: 74  MAENSESFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGTPPKVTKCGVCGLVGHP 133

Query: 61  NDQCPKIKEVSAMGGYRRKDKQNNTYNFGWRDDPNL-------------------STYLE 120
           ND+CPK+  +  +   RR D  +NTYN GWRD+ NL                    T LE
Sbjct: 134 NDKCPKV--IEDVNIVRRYDPHSNTYNSGWRDNLNLRWGNDNQKYTQAPSTSSNQGTNLE 193

Query: 121 EIISKLTLSLNSFKTNFEKNIVKFIKQIINSTGLNQLAIHVLKTKGKDKLSAQPNHANAS 170
           +II  L  +  SF+   ++              + QL   + K  GK KL AQP+HAN S
Sbjct: 194 DIIKALATNTLSFQQKMKQQ-------------MTQLTTAISKMDGKGKLPAQPDHANVS 248

BLAST of IVF0021380 vs. NCBI nr
Match: KAA0051064.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (280), Expect = 1.09e-26
Identity = 66/158 (41.77%), Postives = 84/158 (53.16%), Query Frame = 0

Query: 32  LTKLFASFVKGEVPKVVSCGVCGLLGHHNDQCPKIKEVSAMGGYRRKDKQNNTYNFGWRD 91
           +T L  SFV+G   KV  CGVCGL+GH ND+CPK+  +  +  +RR D   NTYN GWRD
Sbjct: 1   MTSLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPKM--IEDVNIFRRYDPHGNTYNSGWRD 60

Query: 92  DPNLS-------------------TYLEEIISKLTLSLNSFKTNFEKNIVKFIKQIINST 151
           +PNL                    T LE+II  L  +  SF+   ++             
Sbjct: 61  NPNLRWGNDNQKHTQAPPTSSNQCTNLEDIIKALATNTLSFEQEMKQQ------------ 120

Query: 152 GLNQLAIHVLKTKGKDKLSAQPNHANASAITLRSDKIL 170
            + QL   + K  GK KLSAQP+HAN SAI+LRS KIL
Sbjct: 121 -MTQLTTAISKMDGKGKLSAQPDHANVSAISLRSGKIL 143

BLAST of IVF0021380 vs. NCBI nr
Match: TYK29265.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (271), Expect = 6.35e-26
Identity = 72/190 (37.89%), Postives = 98/190 (51.58%), Query Frame = 0

Query: 1   MAKNSKKISSRTLD-SNSSSSYDNSVKEQVNLLTKLFASFVKGEVPKVVSCGVCGLLGHH 60
           MA+NS+   +R  +  NS +   + +K Q+  +T L  SFV+G   KV  CGVCGL+GH 
Sbjct: 1   MAENSQSFENRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGTPLKVTKCGVCGLVGHP 60

Query: 61  NDQCPKIKEVSAMGGYRRKDKQNNTYNFGWRDDPNL-------------------STYLE 120
           ND+ P++  +  +   RR D   NTYN GWRD+P L                    T LE
Sbjct: 61  NDKYPEV--IEDVNIVRRYDPHGNTYNSGWRDNPKLRWGNDNQKHIQAPSTSSNQGTNLE 120

Query: 121 EIISKLTLSLNSFKTNFEKNIVKFIKQIINSTGLNQLAIHVLKTKGKDKLSAQPNHANAS 170
           +II  L ++  SF+   ++              + QL   + K  GK KL AQPNHAN S
Sbjct: 121 DIIKALAINTLSFQQEMKQQ-------------MTQLTTAISKMDGKGKLPAQPNHANVS 175

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KEQ82.1e-5260.73Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G295940 PE=4 SV=1[more]
A0A5D3CW212.0e-3481.05Retrovirus-related Pol polyprotein from transposon 297 family OS=Cucumis melo va... [more]
A0A5D3CB461.5e-2138.74Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7U6X07.4e-2141.51Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5A7V0Q73.7e-2037.70Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
Match NameE-valueIdentityDescription
KAE8647060.15.26e-7261.57hypothetical protein Csa_022980 [Cucumis sativus][more]
KAA0042324.15.38e-4281.05Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var.... [more]
TYK07549.14.16e-2738.95retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0051064.11.09e-2641.77retrotransposon gag protein [Cucumis melo var. makuwa][more]
TYK29265.16.35e-2637.89retrotransposon gag protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0021380.1IVF0021380.1mRNA