IVF0021367 (gene) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGTTGGTTGATGAGCAAGGGGCAGCAACGAAGTCCTTTCAGGACATTGAAAGGCTTACTTTGGGTTTCTTTGATGTTCTTTACAAAAGGATTCCAGGGGACAGATTCATTCCATTTATCACTCACTGGCCTTGCCTCACCCCCAATCAAAATACGCTACTTGTTACCCGATTCTCAGATGAAGAAATCTTCAAGGAAGTAAAGGCTCTCGGAAGAAACAAAGCTCTAGGTCCGGATGGATTTACCACGGATTTCCTTGTTAAGCATTGGCCTAAGCTCATGTGCAGTTTTAAAAATCTGCTTGATAACTTTCACAGTAATAGAAGGTTAAATGCTTGTATCCAAGAAAACTTCATCTGTTTGATACAAAAGAAGGAAGAAGCAGTCCACGTTAAAGATTTCAGACCTATCAGTCTCGCTACCCTAACCTACAAGGTGGTGGCCAAAGTTTTAGCGGAACATTTGAAACTGGTTATGGACTCGATCATAGGTCCACTCCAAAGTGCATTCATTGAAGGAAGGCAAATTCCAGATTTTAATAGCTAA ATGAAGTTGGTTGATGAGCAAGGGGCAGCAACGAAGTCCTTTCAGGACATTGAAAGGCTTACTTTGGGTTTCTTTGATGTTCTTTACAAAAGGATTCCAGGGGACAGATTCATTCCATTTATCACTCACTGGCCTTGCCTCACCCCCAATCAAAATACGCTACTTGTTACCCGATTCTCAGATGAAGAAATCTTCAAGGAAGTAAAGGCTCTCGGAAGAAACAAAGCTCTAGGTCCGGATGGATTTACCACGGATTTCCTTGTTAAGCATTGGCCTAAGCTCATGTGCAGTTTTAAAAATCTGCTTGATAACTTTCACAGTAATAGAAGGTTAAATGCTTGTATCCAAGAAAACTTCATCTGTTTGATACAAAAGAAGGAAGAAGCAGTCCACGTTAAAGATTTCAGACCTATCAGTCTCGCTACCCTAACCTACAAGGTGGTGGCCAAAGTTTTAGCGGAACATTTGAAACTGGTTATGGACTCGATCATAGGTCCACTCCAAAGTGCATTCATTGAAGGAAGGCAAATTCCAGATTTTAATAGCTAA ATGAAGTTGGTTGATGAGCAAGGGGCAGCAACGAAGTCCTTTCAGGACATTGAAAGGCTTACTTTGGGTTTCTTTGATGTTCTTTACAAAAGGATTCCAGGGGACAGATTCATTCCATTTATCACTCACTGGCCTTGCCTCACCCCCAATCAAAATACGCTACTTGTTACCCGATTCTCAGATGAAGAAATCTTCAAGGAAGTAAAGGCTCTCGGAAGAAACAAAGCTCTAGGTCCGGATGGATTTACCACGGATTTCCTTGTTAAGCATTGGCCTAAGCTCATGTGCAGTTTTAAAAATCTGCTTGATAACTTTCACAGTAATAGAAGGTTAAATGCTTGTATCCAAGAAAACTTCATCTGTTTGATACAAAAGAAGGAAGAAGCAGTCCACGTTAAAGATTTCAGACCTATCAGTCTCGCTACCCTAACCTACAAGGTGGTGGCCAAAGTTTTAGCGGAACATTTGAAACTGGTTATGGACTCGATCATAGGTCCACTCCAAAGTGCATTCATTGAAGGAAGGCAAATTCCAGATTTTAATAGCTAA MKLVDEQGAATKSFQDIERLTLGFFDVLYKRIPGDRFIPFITHWPCLTPNQNTLLVTRFSDEEIFKEVKALGRNKALGPDGFTTDFLVKHWPKLMCSFKNLLDNFHSNRRLNACIQENFICLIQKKEEAVHVKDFRPISLATLTYKVVAKVLAEHLKLVMDSIIGPLQSAFIEGRQIPDFNS Homology
BLAST of IVF0021367 vs. ExPASy Swiss-Prot
Match: P14381 (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 2.3e-11 Identity = 40/135 (29.63%), Postives = 68/135 (50.37%), Query Frame = 0
BLAST of IVF0021367 vs. ExPASy Swiss-Prot
Match: P08548 (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 4.7e-09 Identity = 41/135 (30.37%), Postives = 64/135 (47.41%), Query Frame = 0
BLAST of IVF0021367 vs. ExPASy TrEMBL
Match: A0A5D3E0C0 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00520 PE=4 SV=1) HSP 1 Score: 255.0 bits (650), Expect = 2.4e-64 Identity = 124/168 (73.81%), Postives = 138/168 (82.14%), Query Frame = 0
BLAST of IVF0021367 vs. ExPASy TrEMBL
Match: A0A5A7UWP4 (Transposon TX1 uncharacterized OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold518G00230 PE=4 SV=1) HSP 1 Score: 168.3 bits (425), Expect = 2.9e-38 Identity = 83/125 (66.40%), Postives = 98/125 (78.40%), Query Frame = 0
BLAST of IVF0021367 vs. ExPASy TrEMBL
Match: A0A5A7T695 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00690 PE=4 SV=1) HSP 1 Score: 147.1 bits (370), Expect = 7.0e-32 Identity = 76/170 (44.71%), Postives = 105/170 (61.76%), Query Frame = 0
BLAST of IVF0021367 vs. ExPASy TrEMBL
Match: A0A5D3CSY0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00110 PE=4 SV=1) HSP 1 Score: 142.9 bits (359), Expect = 1.3e-30 Identity = 85/153 (55.56%), Postives = 94/153 (61.44%), Query Frame = 0
BLAST of IVF0021367 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1) HSP 1 Score: 122.9 bits (307), Expect = 1.4e-24 Identity = 65/178 (36.52%), Postives = 96/178 (53.93%), Query Frame = 0
BLAST of IVF0021367 vs. NCBI nr
Match: KAA0043278.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK29342.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 249 bits (635), Expect = 3.60e-81 Identity = 124/168 (73.81%), Postives = 138/168 (82.14%), Query Frame = 0
BLAST of IVF0021367 vs. NCBI nr
Match: KAA0059514.1 (Transposon TX1 uncharacterized [Cucumis melo var. makuwa]) HSP 1 Score: 163 bits (413), Expect = 7.83e-43 Identity = 83/125 (66.40%), Postives = 98/125 (78.40%), Query Frame = 0
BLAST of IVF0021367 vs. NCBI nr
Match: XP_038905468.1 (probable leucine-rich repeat receptor-like protein kinase At5g49770 isoform X1 [Benincasa hispida]) HSP 1 Score: 153 bits (386), Expect = 3.43e-39 Identity = 77/125 (61.60%), Postives = 97/125 (77.60%), Query Frame = 0
BLAST of IVF0021367 vs. NCBI nr
Match: KAA0038378.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ97016.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 140 bits (354), Expect = 1.70e-38 Identity = 76/170 (44.71%), Postives = 105/170 (61.76%), Query Frame = 0
BLAST of IVF0021367 vs. NCBI nr
Match: TYK14532.1 (reverse transcriptase [Cucumis melo var. makuwa]) HSP 1 Score: 138 bits (348), Expect = 1.27e-35 Identity = 85/153 (55.56%), Postives = 94/153 (61.44%), Query Frame = 0
BLAST of IVF0021367 vs. TAIR 10
Match: AT1G43760.1 (DNAse I-like superfamily protein ) HSP 1 Score: 54.3 bits (129), Expect = 1.2e-07 Identity = 33/93 (35.48%), Postives = 45/93 (48.39%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|