IVF0021366 (gene) Melon (IVF77) v1

Overview


Name	IVF0021366
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr07: 22724105 .. 22724525 (-)
RNA-Seq Expression	IVF0021366
Synteny	IVF0021366

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGCTCAGCAGTTGAATTCCAAATACAGTAGCCATGAACAGAATCAGTCCCTACACAAATACCGGCACAACGTATACTCCTTCCTTCACCGAAACCTGAAACGAAGAAAATACTCCTCAACAAAACCTTCAAACGAATCGAATGCTTCTAGAGTAGTTCGAAGCAATCGAGGATCCCTCTAGCTTCTGCCGCGGATCAAAGTCAAGAAAAACTGTAGCAGGATTGTTGAAGAGAATTGGTCTCAAGTGAAGAGAAGGGAAAGTCGATTGTCGATTCGATGAGAGTAGCGTTTGTATGATCGAAGTTGATGAGGATTTGATGGAGGGAGAGAAATAGTAGTGCATGGAGGATTTGGGTGGGCCAAAAATGGTGTTCTTGGAAGGTGCTTTGATGGGGGATTACGCCTGGACTGTATGA

mRNA sequence

ATGGACGCTCAGCAGTTGAATTCCAAATACAGTAGCCATGAACAGAATCAGTCCCTACACAAATACCGGCACAACGTATACTCCTTCCTTCACCGAAACCTGAAACGAAGAAAATACTCCTCAACAAAACCTTCAAACGAATCGAATGCTTCTAGAGTAGTTCGAAAATTGGTCTCAAGTGAAGAGAAGGGAAAGTCGATTGTCGATTCGATGAGAGATTTGGGTGGGCCAAAAATGGTGTTCTTGGAAGGTGCTTTGATGGGGGATTACGCCTGGACTGTATGA

Coding sequence (CDS)

ATGGACGCTCAGCAGTTGAATTCCAAATACAGTAGCCATGAACAGAATCAGTCCCTACACAAATACCGGCACAACGTATACTCCTTCCTTCACCGAAACCTGAAACGAAGAAAATACTCCTCAACAAAACCTTCAAACGAATCGAATGCTTCTAGAGTAGTTCGAAAATTGGTCTCAAGTGAAGAGAAGGGAAAGTCGATTGTCGATTCGATGAGAGATTTGGGTGGGCCAAAAATGGTGTTCTTGGAAGGTGCTTTGATGGGGGATTACGCCTGGACTGTATGA

Protein sequence

MDAQQLNSKYSSHEQNQSLHKYRHNVYSFLHRNLKRRKYSSTKPSNESNASRVVRKLVSSEEKGKSIVDSMRDLGGPKMVFLEGALMGDYAWTV

Homology

[Close]

BLAST of IVF0021366 vs. ExPASy TrEMBL
Match: A0A0A0KU33 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011650 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.2e-19
Identity = 65/104 (62.50%), Postives = 72/104 (69.23%), Query Frame = 0


Query: 1   MDAQQLNSKYSSHEQNQSLHKYRHNVYSFLHRNLKR-----RKYSSTKPSNESNASRVVR 60
           MDAQQLNSKYS HEQNQSLHKYRHN YS LHRNLKR     R   + +   ES +  +V 
Sbjct: 1   MDAQQLNSKYSIHEQNQSLHKYRHNEYSSLHRNLKRRNTPQRNLKTNRMLLESKSREIVA 60

Query: 61  KLVS-----SEEKGKSIVDSMRDLGGPKMVFLEGALMGDYAWTV 95
            L+      SEEKGKSIVDS+R     KMVF +GALMGDYAWTV
Sbjct: 61  GLLKRNWCPSEEKGKSIVDSLR---AKKMVFFKGALMGDYAWTV 101

[Close]

BLAST of IVF0021366 vs. NCBI nr
Match: KGN53018.1 (hypothetical protein Csa_015274 [Cucumis sativus])

HSP 1 Score: 104 bits (259), Expect = 1.05e-26
Identity = 65/104 (62.50%), Postives = 72/104 (69.23%), Query Frame = 0


Query: 1   MDAQQLNSKYSSHEQNQSLHKYRHNVYSFLHRNLKRRK-----YSSTKPSNESNASRVVR 60
           MDAQQLNSKYS HEQNQSLHKYRHN YS LHRNLKRR        + +   ES +  +V 
Sbjct: 1   MDAQQLNSKYSIHEQNQSLHKYRHNEYSSLHRNLKRRNTPQRNLKTNRMLLESKSREIVA 60

Query: 61  KLVS-----SEEKGKSIVDSMRDLGGPKMVFLEGALMGDYAWTV 94
            L+      SEEKGKSIVDS+R     KMVF +GALMGDYAWTV
Sbjct: 61  GLLKRNWCPSEEKGKSIVDSLR---AKKMVFFKGALMGDYAWTV 101

The following BLAST results are available for this feature:

BLAST of IVF0021366 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0021366 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KU33	1.2e-19	62.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011650 PE=4 SV=1	[more]

BLAST of IVF0021366 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53018.1	1.05e-26	62.50	hypothetical protein Csa_015274 [Cucumis sativus]	[more]

BLAST of IVF0021366 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0021366.1	IVF0021366.1	mRNA