IVF0021355 (gene) Melon (IVF77) v1

Overview
NameIVF0021355
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Locationchr06: 22950862 .. 22951347 (-)
RNA-Seq ExpressionIVF0021355
SyntenyIVF0021355
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTACAGCCGAGAGGATCATCATCTTCATCTTCTCACATGTGTTACAACCGAGAGGATCATCATCATCATCTTCATCTTCAATGCAGTGTGGTGCAGACGATCATCATCTTCAAGACGGTGCGACGTAGACGATCATCATCTTCAATGCGGTGTAGACAATCATCATCATCATCTTCAATGTGGCATAGTAGAGACGATCATCATCTTCATCTTCAATGCGGCGCAATTGAGACAATCATCATCTTCATCTCAATACGGTACAGCCGAGACGATCTTCATCTTCATCTTTAATGCAGCGCAACCAAGACGATCTCCGTCTTCATCGACAAGCATCATCTCCATCTTCCATGCGGTGCAACCAATACGATCTTCATCTTCATCTTCAATGCAGCACAACCAAGACGATCATCATCTCTATCTTCAATGCAACGCAGCCGAGGCGATCTTCATCTCGATCTTCGAAGCGGTGCAACCAAGGTGA

mRNA sequence

ATGTGTTACAGCCGAGAGGATCATCATCTTCATCTTCTCACATGTGTTACAACCGAGAGGATCATCATCATCATCTTCATCTTCAATGCAGTGTGGTGCAGACGATCATCATCTTCAAGACGGTGCGACGTAGACGATCATCATCTTCAATGCGGTGTAGACAATCATCATCATCATCTTCAATGTGGCATAGTAGAGACGATCATCATCTTCATCTTCAATGCGGCGCAATTGAGACAATCATCATCTTCATCTCAATACGGTACAGCCGAGACGATCTTCATCTTCATCTTTAATGCAGCGCAACCAAGACGATCTCCGTCTTCATCGACAAGCATCATCTCCATCTTCCATGCGGTGCAACCAATACGATCTTCATCTTCATCTTCAATGCAGCACAACCAAGACGATCATCATCTCTATCTTCAATGCAACGCAGCCGAGGCGATCTTCATCTCGATCTTCGAAGCGGTGCAACCAAGGTGA

Coding sequence (CDS)

ATGTGTTACAGCCGAGAGGATCATCATCTTCATCTTCTCACATGTGTTACAACCGAGAGGATCATCATCATCATCTTCATCTTCAATGCAGTGTGGTGCAGACGATCATCATCTTCAAGACGGTGCGACGTAGACGATCATCATCTTCAATGCGGTGTAGACAATCATCATCATCATCTTCAATGTGGCATAGTAGAGACGATCATCATCTTCATCTTCAATGCGGCGCAATTGAGACAATCATCATCTTCATCTCAATACGGTACAGCCGAGACGATCTTCATCTTCATCTTTAATGCAGCGCAACCAAGACGATCTCCGTCTTCATCGACAAGCATCATCTCCATCTTCCATGCGGTGCAACCAATACGATCTTCATCTTCATCTTCAATGCAGCACAACCAAGACGATCATCATCTCTATCTTCAATGCAACGCAGCCGAGGCGATCTTCATCTCGATCTTCGAAGCGGTGCAACCAAGGTGA

Protein sequence

MCYSREDHHLHLLTCVTTERIIIIIFIFNAVWCRRSSSSRRCDVDDHHLQCGVDNHHHHLQCGIVETIIIFIFNAAQLRQSSSSSQYGTAETIFIFIFNAAQPRRSPSSSTSIISIFHAVQPIRSSSSSSMQHNQDDHHLYLQCNAAEAIFISIFEAVQPR
Homology
BLAST of IVF0021355 vs. ExPASy TrEMBL
Match: A0A5A7SRV7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00800 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.6e-19
Identity = 83/187 (44.39%), Postives = 100/187 (53.48%), Query Frame = 0

Query: 3   YSREDHHLHLLTCVTTERIIIIIFIFNAVWCRRS---SSSRRCDVDDHHLQCGVDNHHHH 62
           +SRED  LH L CV  ER  I IFIF+ +   R    SSS  C   D+HL       H H
Sbjct: 87  HSRED--LHHLPCVAVER--IFIFIFSLMLQPRGSSFSSSMCCSQKDNHL-------HFH 146

Query: 63  LQCGIVETIIIFIF-NAAQLRQSSSSSQYGTA-----ETIFIFIFNAAQPRRSPSSS--- 122
           LQC   + I IFIF +  +LR SSSSS   ++     E I IFIF+AAQ RRS SSS   
Sbjct: 147 LQCVAAKKIFIFIFSHVFRLRGSSSSSSSLSSPICCMERIIIFIFHAAQQRRSSSSSFLR 206

Query: 123 ----------------TSIISIFHAVQPIRSSSSSSMQHNQDDHHLYLQCNAAEAIFISI 162
                           T I+ IFHA Q  RSSSSS M+ ++D H L+L C AAE + + I
Sbjct: 207 CSRDGHRLHLSCGAAETVIVFIFHAAQQRRSSSSSFMRRSRDGHRLHLPCGAAETVIVFI 262

BLAST of IVF0021355 vs. ExPASy TrEMBL
Match: A0A5A7TBX4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold121G00100 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 3.9e-18
Identity = 80/193 (41.45%), Postives = 95/193 (49.22%), Query Frame = 0

Query: 1   MCYSREDHHLHLLTCVTTERIIIIIFIFNAVWCRRSSSSRRCDVDDHHLQCGVDNHHHHL 60
           MC S+EDHHLHLLTCV  ERIII IF  +     RS                 D H H  
Sbjct: 410 MCCSQEDHHLHLLTCVVVERIIIFIFFMS-----RSQE---------------DFHLHLF 469

Query: 61  QCGIVETIIIFIF-NAAQLRQSSSSSQYGTAETIFIFIFNAAQPRRSPSSSTSIISIFHA 120
            C   + IIIFIF +  Q R SSSSS   T ETI  FIFNA   R   ++   II IF+A
Sbjct: 470 TCIATKRIIIFIFSHVLQSRGSSSSSSIAT-ETIISFIFNATYSRDVNAAEIIIIFIFNA 529

Query: 121 VQ---------------------------PIRSSSSSSMQHNQDDHHLYLQCN------A 160
           VQ                             RSSSSSSM+H+++DHHL+LQC+      A
Sbjct: 530 VQQRQLSYSSSHMCCSREDHLHLHLQCREQRRSSSSSSMRHSRNDHHLHLQCDAVEAFGA 581

BLAST of IVF0021355 vs. ExPASy TrEMBL
Match: A0A5D3DRX7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00420 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 7.4e-17
Identity = 74/196 (37.76%), Postives = 87/196 (44.39%), Query Frame = 0

Query: 1   MCYSREDHHLHLLTCVT----------------TERI--------IIIIFIFNAVWCRR- 60
           +C SRE+HH HLLTCVT                TERI        IIIIFIFN +   R 
Sbjct: 98  ICCSRENHHFHLLTCVTAKTKRTIFIFIFNAIVTERIIFIFLFNTIIIIFIFNTIATERT 157

Query: 61  -------------SSSSRRCDVDDHHLQCGVDNHHHHLQCGIVETIIIFIFNAAQLRQSS 120
                        SSS+  C  +DHH       HH HLQC   + IIIF+FN        
Sbjct: 158 IIFIFKVLLQRGSSSSAICCSQEDHH-------HHLHLQCVAAKKIIIFVFNVV------ 217

Query: 121 SSSQYGTAETIFIFIFNAAQPRRSPSSSTSIISIFHAVQPIRSSSSSSMQHNQDDHHLYL 159
                 T   IFIF+FN  QPR                    SSSSSSM  +++D HL+L
Sbjct: 218 -----ATERIIFIFVFNMTQPR-------------------GSSSSSSMWRSRNDRHLHL 256

BLAST of IVF0021355 vs. ExPASy TrEMBL
Match: A0A5D3DCM3 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199G00330 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 9.6e-17
Identity = 69/179 (38.55%), Postives = 90/179 (50.28%), Query Frame = 0

Query: 1   MCYSREDHHLHLLTCVTTERIIIIIFIFNAVWCRRSSSSRRCDVDDHHLQ---------- 60
           +C SREDHH HL TCV T++++    + N +  RRSSS   C  +DH  +          
Sbjct: 102 ICCSREDHHHHLFTCVATKKVV----LSNMLQLRRSSSQISCSTEDHPFKYVAADKPRGS 161

Query: 61  -------CGVDNHHHHLQCGI------VETIIIFIFNAAQLRQSSSSSQYGTAETIFIFI 120
                  C +D+H+ HLQ  I      V+TIII IF+  QLR SSS S    +       
Sbjct: 162 SSSSSMCCSLDDHYLHLQYIIIFNNAAVQTIIISIFDVVQLRLSSSPSSMRCSRGYHHLH 221

Query: 121 FNAAQPRRSPSSSTSIISIFHAVQPIRSSSSSSMQHNQDDHHLYLQCNAAEAIFISIFE 157
                  R  +    IISIF   Q   SSS SSM  ++  HHL+L+C A EAI ISIF+
Sbjct: 222 L------RCGAVEAIIISIFAVAQSRPSSSLSSMWRSRGHHHLHLRCGAVEAIIISIFD 270

BLAST of IVF0021355 vs. ExPASy TrEMBL
Match: A0A5D3BVC5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00860 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.3e-13
Identity = 80/203 (39.41%), Postives = 95/203 (46.80%), Query Frame = 0

Query: 1   MCYSREDHHLHLLTCVTTERIIIIIF------------IFNAVWCRR------------- 60
           +C SREDHHLHLLTCV  ER II IF             F+  + R              
Sbjct: 558 ICCSREDHHLHLLTCVAAERFIIFIFSHVLQFRGSSSSSFHICYSRENLHLNLFTYSKGS 617

Query: 61  --SSSSRRCDVDDHHLQCGVDNHH-HHLQCGIVETIIIFIFNAAQLRQSSSSSQ--YGTA 120
             SSS   C   D HL+   ++HH H L C   + IIIFIFN  Q R S SSS   Y + 
Sbjct: 618 PSSSSPMCCSQKDLHLRFSQEDHHLHLLTCAAAKRIIIFIFNLLQQRGSLSSSSHIYCSR 677

Query: 121 ETIFIFIFNAAQPRRSPSSSTSIISIF---HAVQPIRSSSSSSMQH----NQDDH-HLY- 162
           E + +            S+   II IF   H +QP  SSSSSS  H     +D H HLY 
Sbjct: 678 EDLHLHFHLLT----CVSAEKIIIFIFIFSHVLQPRGSSSSSSSSHMCCSRKDLHLHLYL 737

BLAST of IVF0021355 vs. NCBI nr
Match: KAA0039121.1 (hypothetical protein E6C27_scaffold121G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (248), Expect = 5.05e-21
Identity = 81/193 (41.97%), Postives = 97/193 (50.26%), Query Frame = 0

Query: 1   MCYSREDHHLHLLTCVTTERIIIIIFIFNAVWCRRSSSSRRCDVDDHHLQCGVDNHHHHL 60
           MC S+EDHHLHLLTCV  ERIII IF  +     RS        +D HL        H  
Sbjct: 410 MCCSQEDHHLHLLTCVVVERIIIFIFFMS-----RSQ-------EDFHL--------HLF 469

Query: 61  QCGIVETIIIFIFN-AAQLRQSSSSSQYGTAETIFIFIFNAAQPRRSPSSSTSIISIFHA 120
            C   + IIIFIF+   Q R SSSSS   T ETI  FIFNA   R   ++   II IF+A
Sbjct: 470 TCIATKRIIIFIFSHVLQSRGSSSSSSIAT-ETIISFIFNATYSRDVNAAEIIIIFIFNA 529

Query: 121 VQPI---------------------------RSSSSSSMQHNQDDHHLYLQCNAAEA--- 159
           VQ                             RSSSSSSM+H+++DHHL+LQC+A EA   
Sbjct: 530 VQQRQLSYSSSHMCCSREDHLHLHLQCREQRRSSSSSSMRHSRNDHHLHLQCDAVEAFGA 581

BLAST of IVF0021355 vs. NCBI nr
Match: TYK26477.1 (hypothetical protein E5676_scaffold313G00420 [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 5.01e-20
Identity = 74/196 (37.76%), Postives = 87/196 (44.39%), Query Frame = 0

Query: 1   MCYSREDHHLHLLTCVT----------------TERII--------IIIFIFNAVWCRR- 60
           +C SRE+HH HLLTCVT                TERII        IIIFIFN +   R 
Sbjct: 98  ICCSRENHHFHLLTCVTAKTKRTIFIFIFNAIVTERIIFIFLFNTIIIIFIFNTIATERT 157

Query: 61  -------------SSSSRRCDVDDHHLQCGVDNHHHHLQCGIVETIIIFIFNAAQLRQSS 120
                        SSS+  C  +DHH       HH HLQC   + IIIF+FN        
Sbjct: 158 IIFIFKVLLQRGSSSSAICCSQEDHH-------HHLHLQCVAAKKIIIFVFNVV------ 217

Query: 121 SSSQYGTAETIFIFIFNAAQPRRSPSSSTSIISIFHAVQPIRSSSSSSMQHNQDDHHLYL 158
                 T   IFIF+FN  QPR S                   SSSSSM  +++D HL+L
Sbjct: 218 -----ATERIIFIFVFNMTQPRGS-------------------SSSSSMWRSRNDRHLHL 256

BLAST of IVF0021355 vs. NCBI nr
Match: TYK21322.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 3.97e-19
Identity = 69/179 (38.55%), Postives = 90/179 (50.28%), Query Frame = 0

Query: 1   MCYSREDHHLHLLTCVTTERIIIIIFIFNAVWCRRSSSSRRCDVDDHHLQ---------- 60
           +C SREDHH HL TCV T+++++     N +  RRSSS   C  +DH  +          
Sbjct: 102 ICCSREDHHHHLFTCVATKKVVLS----NMLQLRRSSSQISCSTEDHPFKYVAADKPRGS 161

Query: 61  -------CGVDNHHHHLQCGI------VETIIIFIFNAAQLRQSSSSSQYGTAETIFIFI 120
                  C +D+H+ HLQ  I      V+TIII IF+  QLR SSS S    +       
Sbjct: 162 SSSSSMCCSLDDHYLHLQYIIIFNNAAVQTIIISIFDVVQLRLSSSPSSMRCSRGYHHLH 221

Query: 121 FNAAQPRRSPSSSTSIISIFHAVQPIRSSSSSSMQHNQDDHHLYLQCNAAEAIFISIFE 156
                  R  +    IISIF   Q   SSS SSM  ++  HHL+L+C A EAI ISIF+
Sbjct: 222 L------RCGAVEAIIISIFAVAQSRPSSSLSSMWRSRGHHHLHLRCGAVEAIIISIFD 270

BLAST of IVF0021355 vs. NCBI nr
Match: KAA0047505.1 (hypothetical protein E6C27_scaffold498G001320 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.02e-17
Identity = 76/216 (35.19%), Postives = 89/216 (41.20%), Query Frame = 0

Query: 1   MCYSREDHHLHLLTCVTTERIIIIIFIFNA------------------------------ 60
           MCYS+E HHL+LLTCV  E+I I  FIF+                               
Sbjct: 126 MCYSQECHHLYLLTCVAVEKIFIFNFIFSHGLQPRGPYSSLSSMRSREDHHLHLQSVAAE 185

Query: 61  ---VWCRR-------SSSSRRCDVDDHHL--QC---GVDNHHHHLQCGIVETIIIFIFNA 120
              ++C         SSSS  C  +DHHL  QC   G D+ H  LQ    E II+FIFN 
Sbjct: 186 RIFIFCHMLQPRGSSSSSSMCCSQEDHHLRLQCCRNGEDHLHLRLQHDTTERIILFIFNV 245

Query: 121 AQLRQSSSSS-------------QYGTAETIFIFIFNAAQPRRSPSSSTSIISIFHAVQP 158
           AQ ++SSSSS             Q G AETI IFI N                       
Sbjct: 246 AQQKRSSSSSSMWRSRNDRHLHLQCGAAETIIIFILNVI--------------------- 305

BLAST of IVF0021355 vs. NCBI nr
Match: KAA0033278.1 (hypothetical protein E6C27_scaffold845G00800 [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 1.04e-17
Identity = 68/175 (38.86%), Postives = 89/175 (50.86%), Query Frame = 0

Query: 1   MCYSREDHHLHL-LTCVTTERIIIIIFIFNAVWCRRSSSSRRCDVDDHHLQCGVDNHHHH 60
           MC S++D+HLH  L CV  ++I I  FIF+ V+  R SSS    +    + C        
Sbjct: 123 MCCSQKDNHLHFHLQCVAAKKIFI--FIFSHVFRLRGSSSSSSSLSSP-ICC-------- 182

Query: 61  LQCGIVETIIIFIFNAAQLRQSSSSS-------------QYGTAETIFIFIFNAAQPRRS 120
                +E IIIFIF+AAQ R+SSSSS               G AET+ +FIF+AAQ RRS
Sbjct: 183 -----MERIIIFIFHAAQQRRSSSSSFLRCSRDGHRLHLSCGAAETVIVFIFHAAQQRRS 242

Query: 121 PSSSTSIISIFHAVQPIRSSSSSSMQHNQDDHHLYLQCNAAEAIFISIFEAVQPR 161
                              SSSS M+ ++D H L+L C AAE + + IF A Q R
Sbjct: 243 -------------------SSSSFMRRSRDGHRLHLPCGAAETVIVFIFHAAQQR 262

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SRV71.6e-1944.39Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TBX43.9e-1841.45Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DRX77.4e-1737.76Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DCM39.6e-1738.55Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3BVC51.3e-1339.41Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
Match NameE-valueIdentityDescription
KAA0039121.15.05e-2141.97hypothetical protein E6C27_scaffold121G00100 [Cucumis melo var. makuwa][more]
TYK26477.15.01e-2037.76hypothetical protein E5676_scaffold313G00420 [Cucumis melo var. makuwa][more]
TYK21322.13.97e-1938.55glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
KAA0047505.11.02e-1735.19hypothetical protein E6C27_scaffold498G001320 [Cucumis melo var. makuwa][more]
KAA0033278.11.04e-1738.86hypothetical protein E6C27_scaffold845G00800 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0021355.2IVF0021355.2mRNA