Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTACAGCCGAGAGGATCATCATCTTCATCTTCTCACATGTGTTACAACCGAGAGGATCATCATCATCATCTTCATCTTCAATGCAGTGTGGTGCAGACGATCATCATCTTCAAGACGGTGCGACGTAGACGATCATCATCTTCAATGCGGTGTAGACAATCATCATCATCATCTTCAATGTGGCATAGTAGAGACGATCATCATCTTCATCTTCAATGCGGCGCAATTGAGACAATCATCATCTTCATCTCAATACGGTACAGCCGAGACGATCTTCATCTTCATCTTTAATGCAGCGCAACCAAGACGATCTCCGTCTTCATCGACAAGCATCATCTCCATCTTCCATGCGGTGCAACCAATACGATCTTCATCTTCATCTTCAATGCAGCACAACCAAGACGATCATCATCTCTATCTTCAATGCAACGCAGCCGAGGCGATCTTCATCTCGATCTTCGAAGCGGTGCAACCAAGGTGA
mRNA sequence
ATGTGTTACAGCCGAGAGGATCATCATCTTCATCTTCTCACATGTGTTACAACCGAGAGGATCATCATCATCATCTTCATCTTCAATGCAGTGTGGTGCAGACGATCATCATCTTCAAGACGGTGCGACGTAGACGATCATCATCTTCAATGCGGTGTAGACAATCATCATCATCATCTTCAATGTGGCATAGTAGAGACGATCATCATCTTCATCTTCAATGCGGCGCAATTGAGACAATCATCATCTTCATCTCAATACGGTACAGCCGAGACGATCTTCATCTTCATCTTTAATGCAGCGCAACCAAGACGATCTCCGTCTTCATCGACAAGCATCATCTCCATCTTCCATGCGGTGCAACCAATACGATCTTCATCTTCATCTTCAATGCAGCACAACCAAGACGATCATCATCTCTATCTTCAATGCAACGCAGCCGAGGCGATCTTCATCTCGATCTTCGAAGCGGTGCAACCAAGGTGA
Coding sequence (CDS)
ATGTGTTACAGCCGAGAGGATCATCATCTTCATCTTCTCACATGTGTTACAACCGAGAGGATCATCATCATCATCTTCATCTTCAATGCAGTGTGGTGCAGACGATCATCATCTTCAAGACGGTGCGACGTAGACGATCATCATCTTCAATGCGGTGTAGACAATCATCATCATCATCTTCAATGTGGCATAGTAGAGACGATCATCATCTTCATCTTCAATGCGGCGCAATTGAGACAATCATCATCTTCATCTCAATACGGTACAGCCGAGACGATCTTCATCTTCATCTTTAATGCAGCGCAACCAAGACGATCTCCGTCTTCATCGACAAGCATCATCTCCATCTTCCATGCGGTGCAACCAATACGATCTTCATCTTCATCTTCAATGCAGCACAACCAAGACGATCATCATCTCTATCTTCAATGCAACGCAGCCGAGGCGATCTTCATCTCGATCTTCGAAGCGGTGCAACCAAGGTGA
Protein sequence
MCYSREDHHLHLLTCVTTERIIIIIFIFNAVWCRRSSSSRRCDVDDHHLQCGVDNHHHHLQCGIVETIIIFIFNAAQLRQSSSSSQYGTAETIFIFIFNAAQPRRSPSSSTSIISIFHAVQPIRSSSSSSMQHNQDDHHLYLQCNAAEAIFISIFEAVQPR
Homology
BLAST of IVF0021355 vs. ExPASy TrEMBL
Match:
A0A5A7SRV7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00800 PE=4 SV=1)
HSP 1 Score: 105.9 bits (263), Expect = 1.6e-19
Identity = 83/187 (44.39%), Postives = 100/187 (53.48%), Query Frame = 0
Query: 3 YSREDHHLHLLTCVTTERIIIIIFIFNAVWCRRS---SSSRRCDVDDHHLQCGVDNHHHH 62
+SRED LH L CV ER I IFIF+ + R SSS C D+HL H H
Sbjct: 87 HSRED--LHHLPCVAVER--IFIFIFSLMLQPRGSSFSSSMCCSQKDNHL-------HFH 146
Query: 63 LQCGIVETIIIFIF-NAAQLRQSSSSSQYGTA-----ETIFIFIFNAAQPRRSPSSS--- 122
LQC + I IFIF + +LR SSSSS ++ E I IFIF+AAQ RRS SSS
Sbjct: 147 LQCVAAKKIFIFIFSHVFRLRGSSSSSSSLSSPICCMERIIIFIFHAAQQRRSSSSSFLR 206
Query: 123 ----------------TSIISIFHAVQPIRSSSSSSMQHNQDDHHLYLQCNAAEAIFISI 162
T I+ IFHA Q RSSSSS M+ ++D H L+L C AAE + + I
Sbjct: 207 CSRDGHRLHLSCGAAETVIVFIFHAAQQRRSSSSSFMRRSRDGHRLHLPCGAAETVIVFI 262
BLAST of IVF0021355 vs. ExPASy TrEMBL
Match:
A0A5A7TBX4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold121G00100 PE=4 SV=1)
HSP 1 Score: 101.3 bits (251), Expect = 3.9e-18
Identity = 80/193 (41.45%), Postives = 95/193 (49.22%), Query Frame = 0
Query: 1 MCYSREDHHLHLLTCVTTERIIIIIFIFNAVWCRRSSSSRRCDVDDHHLQCGVDNHHHHL 60
MC S+EDHHLHLLTCV ERIII IF + RS D H H
Sbjct: 410 MCCSQEDHHLHLLTCVVVERIIIFIFFMS-----RSQE---------------DFHLHLF 469
Query: 61 QCGIVETIIIFIF-NAAQLRQSSSSSQYGTAETIFIFIFNAAQPRRSPSSSTSIISIFHA 120
C + IIIFIF + Q R SSSSS T ETI FIFNA R ++ II IF+A
Sbjct: 470 TCIATKRIIIFIFSHVLQSRGSSSSSSIAT-ETIISFIFNATYSRDVNAAEIIIIFIFNA 529
Query: 121 VQ---------------------------PIRSSSSSSMQHNQDDHHLYLQCN------A 160
VQ RSSSSSSM+H+++DHHL+LQC+ A
Sbjct: 530 VQQRQLSYSSSHMCCSREDHLHLHLQCREQRRSSSSSSMRHSRNDHHLHLQCDAVEAFGA 581
BLAST of IVF0021355 vs. ExPASy TrEMBL
Match:
A0A5D3DRX7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00420 PE=4 SV=1)
HSP 1 Score: 97.1 bits (240), Expect = 7.4e-17
Identity = 74/196 (37.76%), Postives = 87/196 (44.39%), Query Frame = 0
Query: 1 MCYSREDHHLHLLTCVT----------------TERI--------IIIIFIFNAVWCRR- 60
+C SRE+HH HLLTCVT TERI IIIIFIFN + R
Sbjct: 98 ICCSRENHHFHLLTCVTAKTKRTIFIFIFNAIVTERIIFIFLFNTIIIIFIFNTIATERT 157
Query: 61 -------------SSSSRRCDVDDHHLQCGVDNHHHHLQCGIVETIIIFIFNAAQLRQSS 120
SSS+ C +DHH HH HLQC + IIIF+FN
Sbjct: 158 IIFIFKVLLQRGSSSSAICCSQEDHH-------HHLHLQCVAAKKIIIFVFNVV------ 217
Query: 121 SSSQYGTAETIFIFIFNAAQPRRSPSSSTSIISIFHAVQPIRSSSSSSMQHNQDDHHLYL 159
T IFIF+FN QPR SSSSSSM +++D HL+L
Sbjct: 218 -----ATERIIFIFVFNMTQPR-------------------GSSSSSSMWRSRNDRHLHL 256
BLAST of IVF0021355 vs. ExPASy TrEMBL
Match:
A0A5D3DCM3 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199G00330 PE=4 SV=1)
HSP 1 Score: 96.7 bits (239), Expect = 9.6e-17
Identity = 69/179 (38.55%), Postives = 90/179 (50.28%), Query Frame = 0
Query: 1 MCYSREDHHLHLLTCVTTERIIIIIFIFNAVWCRRSSSSRRCDVDDHHLQ---------- 60
+C SREDHH HL TCV T++++ + N + RRSSS C +DH +
Sbjct: 102 ICCSREDHHHHLFTCVATKKVV----LSNMLQLRRSSSQISCSTEDHPFKYVAADKPRGS 161
Query: 61 -------CGVDNHHHHLQCGI------VETIIIFIFNAAQLRQSSSSSQYGTAETIFIFI 120
C +D+H+ HLQ I V+TIII IF+ QLR SSS S +
Sbjct: 162 SSSSSMCCSLDDHYLHLQYIIIFNNAAVQTIIISIFDVVQLRLSSSPSSMRCSRGYHHLH 221
Query: 121 FNAAQPRRSPSSSTSIISIFHAVQPIRSSSSSSMQHNQDDHHLYLQCNAAEAIFISIFE 157
R + IISIF Q SSS SSM ++ HHL+L+C A EAI ISIF+
Sbjct: 222 L------RCGAVEAIIISIFAVAQSRPSSSLSSMWRSRGHHHLHLRCGAVEAIIISIFD 270
BLAST of IVF0021355 vs. ExPASy TrEMBL
Match:
A0A5D3BVC5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00860 PE=4 SV=1)
HSP 1 Score: 86.3 bits (212), Expect = 1.3e-13
Identity = 80/203 (39.41%), Postives = 95/203 (46.80%), Query Frame = 0
Query: 1 MCYSREDHHLHLLTCVTTERIIIIIF------------IFNAVWCRR------------- 60
+C SREDHHLHLLTCV ER II IF F+ + R
Sbjct: 558 ICCSREDHHLHLLTCVAAERFIIFIFSHVLQFRGSSSSSFHICYSRENLHLNLFTYSKGS 617
Query: 61 --SSSSRRCDVDDHHLQCGVDNHH-HHLQCGIVETIIIFIFNAAQLRQSSSSSQ--YGTA 120
SSS C D HL+ ++HH H L C + IIIFIFN Q R S SSS Y +
Sbjct: 618 PSSSSPMCCSQKDLHLRFSQEDHHLHLLTCAAAKRIIIFIFNLLQQRGSLSSSSHIYCSR 677
Query: 121 ETIFIFIFNAAQPRRSPSSSTSIISIF---HAVQPIRSSSSSSMQH----NQDDH-HLY- 162
E + + S+ II IF H +QP SSSSSS H +D H HLY
Sbjct: 678 EDLHLHFHLLT----CVSAEKIIIFIFIFSHVLQPRGSSSSSSSSHMCCSRKDLHLHLYL 737
BLAST of IVF0021355 vs. NCBI nr
Match:
KAA0039121.1 (hypothetical protein E6C27_scaffold121G00100 [Cucumis melo var. makuwa])
HSP 1 Score: 100 bits (248), Expect = 5.05e-21
Identity = 81/193 (41.97%), Postives = 97/193 (50.26%), Query Frame = 0
Query: 1 MCYSREDHHLHLLTCVTTERIIIIIFIFNAVWCRRSSSSRRCDVDDHHLQCGVDNHHHHL 60
MC S+EDHHLHLLTCV ERIII IF + RS +D HL H
Sbjct: 410 MCCSQEDHHLHLLTCVVVERIIIFIFFMS-----RSQ-------EDFHL--------HLF 469
Query: 61 QCGIVETIIIFIFN-AAQLRQSSSSSQYGTAETIFIFIFNAAQPRRSPSSSTSIISIFHA 120
C + IIIFIF+ Q R SSSSS T ETI FIFNA R ++ II IF+A
Sbjct: 470 TCIATKRIIIFIFSHVLQSRGSSSSSSIAT-ETIISFIFNATYSRDVNAAEIIIIFIFNA 529
Query: 121 VQPI---------------------------RSSSSSSMQHNQDDHHLYLQCNAAEA--- 159
VQ RSSSSSSM+H+++DHHL+LQC+A EA
Sbjct: 530 VQQRQLSYSSSHMCCSREDHLHLHLQCREQRRSSSSSSMRHSRNDHHLHLQCDAVEAFGA 581
BLAST of IVF0021355 vs. NCBI nr
Match:
TYK26477.1 (hypothetical protein E5676_scaffold313G00420 [Cucumis melo var. makuwa])
HSP 1 Score: 95.1 bits (235), Expect = 5.01e-20
Identity = 74/196 (37.76%), Postives = 87/196 (44.39%), Query Frame = 0
Query: 1 MCYSREDHHLHLLTCVT----------------TERII--------IIIFIFNAVWCRR- 60
+C SRE+HH HLLTCVT TERII IIIFIFN + R
Sbjct: 98 ICCSRENHHFHLLTCVTAKTKRTIFIFIFNAIVTERIIFIFLFNTIIIIFIFNTIATERT 157
Query: 61 -------------SSSSRRCDVDDHHLQCGVDNHHHHLQCGIVETIIIFIFNAAQLRQSS 120
SSS+ C +DHH HH HLQC + IIIF+FN
Sbjct: 158 IIFIFKVLLQRGSSSSAICCSQEDHH-------HHLHLQCVAAKKIIIFVFNVV------ 217
Query: 121 SSSQYGTAETIFIFIFNAAQPRRSPSSSTSIISIFHAVQPIRSSSSSSMQHNQDDHHLYL 158
T IFIF+FN QPR S SSSSSM +++D HL+L
Sbjct: 218 -----ATERIIFIFVFNMTQPRGS-------------------SSSSSMWRSRNDRHLHL 256
BLAST of IVF0021355 vs. NCBI nr
Match:
TYK21322.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])
HSP 1 Score: 94.0 bits (232), Expect = 3.97e-19
Identity = 69/179 (38.55%), Postives = 90/179 (50.28%), Query Frame = 0
Query: 1 MCYSREDHHLHLLTCVTTERIIIIIFIFNAVWCRRSSSSRRCDVDDHHLQ---------- 60
+C SREDHH HL TCV T+++++ N + RRSSS C +DH +
Sbjct: 102 ICCSREDHHHHLFTCVATKKVVLS----NMLQLRRSSSQISCSTEDHPFKYVAADKPRGS 161
Query: 61 -------CGVDNHHHHLQCGI------VETIIIFIFNAAQLRQSSSSSQYGTAETIFIFI 120
C +D+H+ HLQ I V+TIII IF+ QLR SSS S +
Sbjct: 162 SSSSSMCCSLDDHYLHLQYIIIFNNAAVQTIIISIFDVVQLRLSSSPSSMRCSRGYHHLH 221
Query: 121 FNAAQPRRSPSSSTSIISIFHAVQPIRSSSSSSMQHNQDDHHLYLQCNAAEAIFISIFE 156
R + IISIF Q SSS SSM ++ HHL+L+C A EAI ISIF+
Sbjct: 222 L------RCGAVEAIIISIFAVAQSRPSSSLSSMWRSRGHHHLHLRCGAVEAIIISIFD 270
BLAST of IVF0021355 vs. NCBI nr
Match:
KAA0047505.1 (hypothetical protein E6C27_scaffold498G001320 [Cucumis melo var. makuwa])
HSP 1 Score: 89.4 bits (220), Expect = 1.02e-17
Identity = 76/216 (35.19%), Postives = 89/216 (41.20%), Query Frame = 0
Query: 1 MCYSREDHHLHLLTCVTTERIIIIIFIFNA------------------------------ 60
MCYS+E HHL+LLTCV E+I I FIF+
Sbjct: 126 MCYSQECHHLYLLTCVAVEKIFIFNFIFSHGLQPRGPYSSLSSMRSREDHHLHLQSVAAE 185
Query: 61 ---VWCRR-------SSSSRRCDVDDHHL--QC---GVDNHHHHLQCGIVETIIIFIFNA 120
++C SSSS C +DHHL QC G D+ H LQ E II+FIFN
Sbjct: 186 RIFIFCHMLQPRGSSSSSSMCCSQEDHHLRLQCCRNGEDHLHLRLQHDTTERIILFIFNV 245
Query: 121 AQLRQSSSSS-------------QYGTAETIFIFIFNAAQPRRSPSSSTSIISIFHAVQP 158
AQ ++SSSSS Q G AETI IFI N
Sbjct: 246 AQQKRSSSSSSMWRSRNDRHLHLQCGAAETIIIFILNVI--------------------- 305
BLAST of IVF0021355 vs. NCBI nr
Match:
KAA0033278.1 (hypothetical protein E6C27_scaffold845G00800 [Cucumis melo var. makuwa])
HSP 1 Score: 88.6 bits (218), Expect = 1.04e-17
Identity = 68/175 (38.86%), Postives = 89/175 (50.86%), Query Frame = 0
Query: 1 MCYSREDHHLHL-LTCVTTERIIIIIFIFNAVWCRRSSSSRRCDVDDHHLQCGVDNHHHH 60
MC S++D+HLH L CV ++I I FIF+ V+ R SSS + + C
Sbjct: 123 MCCSQKDNHLHFHLQCVAAKKIFI--FIFSHVFRLRGSSSSSSSLSSP-ICC-------- 182
Query: 61 LQCGIVETIIIFIFNAAQLRQSSSSS-------------QYGTAETIFIFIFNAAQPRRS 120
+E IIIFIF+AAQ R+SSSSS G AET+ +FIF+AAQ RRS
Sbjct: 183 -----MERIIIFIFHAAQQRRSSSSSFLRCSRDGHRLHLSCGAAETVIVFIFHAAQQRRS 242
Query: 121 PSSSTSIISIFHAVQPIRSSSSSSMQHNQDDHHLYLQCNAAEAIFISIFEAVQPR 161
SSSS M+ ++D H L+L C AAE + + IF A Q R
Sbjct: 243 -------------------SSSSFMRRSRDGHRLHLPCGAAETVIVFIFHAAQQR 262
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7SRV7 | 1.6e-19 | 44.39 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7TBX4 | 3.9e-18 | 41.45 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3DRX7 | 7.4e-17 | 37.76 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3DCM3 | 9.6e-17 | 38.55 | Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
A0A5D3BVC5 | 1.3e-13 | 39.41 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
Match Name | E-value | Identity | Description | |
KAA0039121.1 | 5.05e-21 | 41.97 | hypothetical protein E6C27_scaffold121G00100 [Cucumis melo var. makuwa] | [more] |
TYK26477.1 | 5.01e-20 | 37.76 | hypothetical protein E5676_scaffold313G00420 [Cucumis melo var. makuwa] | [more] |
TYK21322.1 | 3.97e-19 | 38.55 | glial fibrillary acidic protein-like [Cucumis melo var. makuwa] | [more] |
KAA0047505.1 | 1.02e-17 | 35.19 | hypothetical protein E6C27_scaffold498G001320 [Cucumis melo var. makuwa] | [more] |
KAA0033278.1 | 1.04e-17 | 38.86 | hypothetical protein E6C27_scaffold845G00800 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |