IVF0021350 (gene) Melon (IVF77) v1

Overview
NameIVF0021350
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description2-oxoglutarate-dependent dioxygenase family protein isoform 1
Locationchr08: 25294768 .. 25295141 (+)
RNA-Seq ExpressionIVF0021350
SyntenyIVF0021350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCTCCAAGCTGCCCATCGCCTCCAATCTTTTCTTCTTATTCGTCCAACCATTAGCCACCAGTGTCGCCCATCCCTTCGCTGCGTCCTCGCTTCATCAAGGTGAGCCATTATTCATCCATCATCCGCGAAGGGCCTGCCGCCGTCGGTTCTCGCAAAGTCGTCGCTCGCGGTTGCGGTTCCCCTGCTACACCACTGCTCCTTCTCAGTGTGTCGTCAGACGAAGCCCAACCACCGCCATGTTCCCTAGCTGTGCACCAGATCCGAGTTGACTGTCTGCCTTCTTCAGCCGCACACGCGTCAAGCTACCTCCCAAGCCAAGCTGCTCGCAAGCCTCCCTTTCTTGCAGCCACTTGCGCTTGTGTTTGGTAA

mRNA sequence

ATGAACCTCCAAGCTGCCCATCGCCTCCAATCTTTTCTTCTTATTCGGCCTGCCGCCGTCGGTTCTCGCAAAGTCGTCGCTCGCGGTTGCGGTTCCCCTGCTACACCACTGCTCCTTCTCAGTGTGTCGTCAGACGAAGCCCAACCACCGCCATGTTCCCTAGCTGTGCACCAGATCCGAGTTGACTGTCTGCCTTCTTCAGCCGCACACGCGTCAAGCTACCTCCCAAGCCAAGCTGCTCGCAAGCCTCCCTTTCTTGCAGCCACTTGCGCTTGTGTTTGGTAA

Coding sequence (CDS)

ATGAACCTCCAAGCTGCCCATCGCCTCCAATCTTTTCTTCTTATTCGGCCTGCCGCCGTCGGTTCTCGCAAAGTCGTCGCTCGCGGTTGCGGTTCCCCTGCTACACCACTGCTCCTTCTCAGTGTGTCGTCAGACGAAGCCCAACCACCGCCATGTTCCCTAGCTGTGCACCAGATCCGAGTTGACTGTCTGCCTTCTTCAGCCGCACACGCGTCAAGCTACCTCCCAAGCCAAGCTGCTCGCAAGCCTCCCTTTCTTGCAGCCACTTGCGCTTGTGTTTGGTAA

Protein sequence

MNLQAAHRLQSFLLIRPAAVGSRKVVARGCGSPATPLLLLSVSSDEAQPPPCSLAVHQIRVDCLPSSAAHASSYLPSQAARKPPFLAATCACVW
Homology
[Close]
BLAST of IVF0021350 vs. ExPASy TrEMBL
Match: A0A5D3BFV0 (2-oxoglutarate-dependent dioxygenase family protein isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00200 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.7e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 17  PAAVGSRKVVARGCGSPATPLLLLSVSSDEAQPPPCSLAVHQIRVDCLPSSAAHASSYLP 76
           PAAVGSRKVVARGCGSPATPLLLLSVSSDEAQPPPCSLAVHQIRVDCLPSSAAHASSYLP
Sbjct: 105 PAAVGSRKVVARGCGSPATPLLLLSVSSDEAQPPPCSLAVHQIRVDCLPSSAAHASSYLP 164

Query: 77  SQAARKPPFLAATCACVW 95
           SQAARKPPFLAATCACVW
Sbjct: 165 SQAARKPPFLAATCACVW 182

[Close]
BLAST of IVF0021350 vs. ExPASy TrEMBL
Match: A0A5A7U7Q2 (2-oxoglutarate-dependent dioxygenase family protein isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1166G00230 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 7.8e-35
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 0 

Query: 17  PAAVGSRKVVARGCGSPATPLLLLSVSSDEAQPPPCSLAVHQIRVDCLPSSAAHASSYLP 76
           PA VGSRKVVARGCGSPATPLLLLSVSSDEAQPPPCSLAVHQIRVDCLPSSAAHASSYLP
Sbjct: 105 PATVGSRKVVARGCGSPATPLLLLSVSSDEAQPPPCSLAVHQIRVDCLPSSAAHASSYLP 164

Query: 77  SQAARKPPFLAATCACVW 95
           SQAARKPPFLAATCACVW
Sbjct: 165 SQAARKPPFLAATCACVW 182

[Close]
BLAST of IVF0021350 vs. NCBI nr
Match: TYJ97997.1 (2-oxoglutarate-dependent dioxygenase family protein isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 156 bits (394), Expect = 2.83e-42
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 17  PAAVGSRKVVARGCGSPATPLLLLSVSSDEAQPPPCSLAVHQIRVDCLPSSAAHASSYLP 76
           PAAVGSRKVVARGCGSPATPLLLLSVSSDEAQPPPCSLAVHQIRVDCLPSSAAHASSYLP
Sbjct: 105 PAAVGSRKVVARGCGSPATPLLLLSVSSDEAQPPPCSLAVHQIRVDCLPSSAAHASSYLP 164

Query: 77  SQAARKPPFLAATCACVW 94
           SQAARKPPFLAATCACVW
Sbjct: 165 SQAARKPPFLAATCACVW 182

[Close]
BLAST of IVF0021350 vs. NCBI nr
Match: KAA0050407.1 (2-oxoglutarate-dependent dioxygenase family protein isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 154 bits (390), Expect = 1.04e-41
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 0 

Query: 17  PAAVGSRKVVARGCGSPATPLLLLSVSSDEAQPPPCSLAVHQIRVDCLPSSAAHASSYLP 76
           PA VGSRKVVARGCGSPATPLLLLSVSSDEAQPPPCSLAVHQIRVDCLPSSAAHASSYLP
Sbjct: 105 PATVGSRKVVARGCGSPATPLLLLSVSSDEAQPPPCSLAVHQIRVDCLPSSAAHASSYLP 164

Query: 77  SQAARKPPFLAATCACVW 94
           SQAARKPPFLAATCACVW
Sbjct: 165 SQAARKPPFLAATCACVW 182

The following BLAST results are available for this feature:
BLAST of IVF0021350 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0021350 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BFV02.7e-35100.002-oxoglutarate-dependent dioxygenase family protein isoform 1 OS=Cucumis melo va... [more]
A0A5A7U7Q27.8e-3598.722-oxoglutarate-dependent dioxygenase family protein isoform 1 OS=Cucumis melo va... [more]
BLAST of IVF0021350 vs. NCBI nr
Match NameE-valueIdentityDescription
TYJ97997.12.83e-42100.002-oxoglutarate-dependent dioxygenase family protein isoform 1 [Cucumis melo var.... [more]
KAA0050407.11.04e-4198.722-oxoglutarate-dependent dioxygenase family protein isoform 1 [Cucumis melo var.... [more]
BLAST of IVF0021350 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0021350.1IVF0021350.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
molecular_function GO:0051213 dioxygenase activity