IVF0021329 (gene) Melon (IVF77) v1

Overview
NameIVF0021329
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description50S ribosomal protein L7/L12
Locationchr10: 3913426 .. 3914128 (-)
RNA-Seq ExpressionIVF0021329
SyntenyIVF0021329
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCTGACTATGGTTGCAAGATCCCTTCGAGTCCATTCCACACTCACCAAAATAATTGGATTGTCGCAGGTTCGCTTCTTTCAGCCAGATTTTACTACCAGAGACCCGAATTCCAAGCCAAAAATACACAAATATCCACCATTTTATGATCCATATGGCCCTAAGCCTTCACCCTCAGATAAAATCATTGAACTTGCTGAAAGAATTGTAACACTGCCTCCCAATGAGCGTTGCCAGATCGGTCCGACACTCTCTGAAAGACTTAGACATCCTAAGTAGCAGCCAATTTCAGTGGATGGCTTGGACGTTGGTACCGAAGGTCGAAGGAGGAGGGGCGGCAGCAGGATCGTCTAAGGCAGAGGAGAAGGAAGAAAAAACCGCATTTGATGTGAAGTTAGAGAAGTTCGACAGTGCTTCAAAAATTAAGGTGATTAAAGAAGTAAGGTCTTTCACTAATCTGGGTCTCAAGGAGGCAAAAGATTTGGTTGAGAAAGTACCTGCAATTCTTAAGCAAGGGGTGACCAAGGAAGAAGCAAATGATATCATTGAAAAAATCAAAGCTGCTGGGGGAGTTGCTGTGATGGAAGTAGTAAAATGTTCTAAAGTTAGTATTGACTTTTTGTTTATATATATCTTTTCCAACTGGGCAATTCCTAGCTTCAATCAATCACTGGATGGTGAATATTCTTCTCTAAGTTGA

mRNA sequence

ATGAAGCTGACTATGGTTGCAAGATCCCTTCGAGTCCATTCCACACTCACCAAAATAATTGGATTGTCGCAGGTTCGCTTCTTTCAGCCAGATTTTACTACCAGAGACCCGAATTCCAAGCCAAAAATACACAAATATCCACCATTTTATGATCCATATGGCCCTAAGCCTTCACCCTCAGATAAAATCATTGAACTTGCTGAAAGAATTGTAACACTGCCTCCCAATGAGCGTTGCCAGATCGGAGGGGCGGCAGCAGGATCGTCTAAGGCAGAGGAGAAGGAAGAAAAAACCGCATTTGATGTGAAGTTAGAGAAGTTCGACAGTGCTTCAAAAATTAAGGTGATTAAAGAAGTAAGGTCTTTCACTAATCTGGGTCTCAAGGAGGCAAAAGATTTGGTTGAGAAAGTACCTGCAATTCTTAAGCAAGGGGTGACCAAGGAAGAAGCAAATGATATCATTGAAAAAATCAAAGCTGCTGGGGGAGTTGCTGTGATGGAAGTAGTAAAATGTTCTAAAGTTAGTATTGACTTTTTGTTTATATATATCTTTTCCAACTGGGCAATTCCTAGCTTCAATCAATCACTGGATGGTGAATATTCTTCTCTAAGTTGA

Coding sequence (CDS)

ATGAAGCTGACTATGGTTGCAAGATCCCTTCGAGTCCATTCCACACTCACCAAAATAATTGGATTGTCGCAGGTTCGCTTCTTTCAGCCAGATTTTACTACCAGAGACCCGAATTCCAAGCCAAAAATACACAAATATCCACCATTTTATGATCCATATGGCCCTAAGCCTTCACCCTCAGATAAAATCATTGAACTTGCTGAAAGAATTGTAACACTGCCTCCCAATGAGCGTTGCCAGATCGGAGGGGCGGCAGCAGGATCGTCTAAGGCAGAGGAGAAGGAAGAAAAAACCGCATTTGATGTGAAGTTAGAGAAGTTCGACAGTGCTTCAAAAATTAAGGTGATTAAAGAAGTAAGGTCTTTCACTAATCTGGGTCTCAAGGAGGCAAAAGATTTGGTTGAGAAAGTACCTGCAATTCTTAAGCAAGGGGTGACCAAGGAAGAAGCAAATGATATCATTGAAAAAATCAAAGCTGCTGGGGGAGTTGCTGTGATGGAAGTAGTAAAATGTTCTAAAGTTAGTATTGACTTTTTGTTTATATATATCTTTTCCAACTGGGCAATTCCTAGCTTCAATCAATCACTGGATGGTGAATATTCTTCTCTAAGTTGA

Protein sequence

MKLTMVARSLRVHSTLTKIIGLSQVRFFQPDFTTRDPNSKPKIHKYPPFYDPYGPKPSPSDKIIELAERIVTLPPNERCQIGGAAAGSSKAEEKEEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDIIEKIKAAGGVAVMEVVKCSKVSIDFLFIYIFSNWAIPSFNQSLDGEYSSLS
Homology
[Close]
BLAST of IVF0021329 vs. ExPASy Swiss-Prot
Match: A2C031 (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain NATL1A) OX=167555 GN=rplL PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.9e-15
Identity = 46/85 (54.12%), Postives = 60/85 (70.59%), Query Frame = 0 

Query: 83  GAAAGSSKAEEKEEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAILK 142
           GAAAG   A+  EEKT F+V LE FD++SKIKV+KEVR+ T LGL EAK LVE  P  +K
Sbjct: 47  GAAAGGDGADAAEEKTEFEVVLESFDASSKIKVLKEVRNATGLGLGEAKALVEAAPKTIK 106

Query: 143 QGVTKEEANDIIEKIKAAGGVAVME 168
           +G TKE+A  + + I+A GG   ++
Sbjct: 107 EGATKEDAEALKKAIEAVGGKVTLK 131

[Close]
BLAST of IVF0021329 vs. ExPASy Swiss-Prot
Match: Q46HH2 (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain NATL2A) OX=59920 GN=rplL PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 8.4e-15
Identity = 45/85 (52.94%), Postives = 60/85 (70.59%), Query Frame = 0 

Query: 83  GAAAGSSKAEEKEEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAILK 142
           GAAAG   A+  EEKT F+V LE F+++SKIKV+KEVR+ T LGL EAK LVE  P  +K
Sbjct: 47  GAAAGGDGADAAEEKTEFEVVLESFEASSKIKVLKEVRNATGLGLGEAKALVEAAPKTIK 106

Query: 143 QGVTKEEANDIIEKIKAAGGVAVME 168
           +G TKE+A  + + I+A GG   ++
Sbjct: 107 EGATKEDAEALKKAIEAVGGKVTLK 131

[Close]
BLAST of IVF0021329 vs. ExPASy Swiss-Prot
Match: A9BDG4 (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) OX=93059 GN=rplL PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-13
Identity = 45/86 (52.33%), Postives = 60/86 (69.77%), Query Frame = 0 

Query: 83  GAAAGSSKA-EEKEEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAIL 142
           GA  G+S A E  EEKT FDV LE FD+A+KIKV+KEVR+ T LGL EAK +VE  P  +
Sbjct: 47  GAGGGASAAGEAAEEKTEFDVILESFDAAAKIKVLKEVRNATGLGLGEAKAMVEAAPKTI 106

Query: 143 KQGVTKEEANDIIEKIKAAGGVAVME 168
           K+G +KE+A  + + I+A GG   ++
Sbjct: 107 KEGASKEDAEALKKAIEAVGGKVTLK 132

[Close]
BLAST of IVF0021329 vs. ExPASy Swiss-Prot
Match: Q7U3T9 (50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain WH8102) OX=84588 GN=rplL PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-13
Identity = 43/85 (50.59%), Postives = 59/85 (69.41%), Query Frame = 0 

Query: 83  GAAAGSSKAEEKEEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAILK 142
           GAAAG    E  EEKT FDV LE FD+A+KIKV+K VR+ T LGL +AK LVE  P  +K
Sbjct: 47  GAAAGGGGGEVAEEKTEFDVILESFDAAAKIKVLKAVRNATGLGLGDAKALVEAAPKPIK 106

Query: 143 QGVTKEEANDIIEKIKAAGGVAVME 168
           +G++K+EA  + ++I+  GG   ++
Sbjct: 107 EGISKDEAEALKKEIEEVGGKVTLK 131

[Close]
BLAST of IVF0021329 vs. ExPASy Swiss-Prot
Match: P41189 (50S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.6e-13
Identity = 43/83 (51.81%), Postives = 56/83 (67.47%), Query Frame = 0 

Query: 84  AAAGSSKAEEKEEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQ 143
           A+A    A    EKT F+V LE FD+  KI VIKEVR+ T LGLKEAKD VE  P  LK 
Sbjct: 42  ASAAGESAAAVAEKTEFEVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKT 101

Query: 144 GVTKEEANDIIEKIKAAGGVAVM 167
           GV+K+EA ++ +K++AAG   ++
Sbjct: 102 GVSKDEAEELKKKLEAAGATIIL 124

[Close]
BLAST of IVF0021329 vs. ExPASy TrEMBL
Match: A0A0A0L907 (Ribosomal_L12 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G623960 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 3.7e-66
Identity = 145/193 (75.13%), Postives = 154/193 (79.79%), Query Frame = 0 

Query: 1   MKLTMVARSLRVHSTLTKIIGLSQVRFFQPDFTTRDPNSKPKIHKYPPFYDPYGPKPSPS 60
           MKLT+VA+SL+V ST  KIIGLSQVRFFQPDFT RDPN+KPK +KYP FYDPYGP+P PS
Sbjct: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60

Query: 61  DKIIELAERIVTLPPNERCQI--------------------------GGAAAGSSKAEEK 120
           DKIIELAERIV LP  ERCQI                          GGAAAGSS  EEK
Sbjct: 61  DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120

Query: 121 EEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 168
           +EKTAFDVKLEKFD+ASKIKVIKEVR+FTNLGLKEAKDLVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180

[Close]
BLAST of IVF0021329 vs. ExPASy TrEMBL
Match: A0A1S3BPI3 (50S ribosomal protein L7/L12 OS=Cucumis melo OX=3656 GN=LOC103492120 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 4.1e-65
Identity = 144/193 (74.61%), Postives = 152/193 (78.76%), Query Frame = 0 

Query: 1   MKLTMVARSLRVHSTLTKIIGLSQVRFFQPDFTTRDPNSKPKIHKYPPFYDPYGPKPSPS 60
           MKLT+VARSL+  STLTKIIGLSQVRFFQPDFT RDP +KPK +KYPPFYDPYGP+P PS
Sbjct: 1   MKLTVVARSLQARSTLTKIIGLSQVRFFQPDFTPRDPKAKPKKYKYPPFYDPYGPRPPPS 60

Query: 61  DKIIELAERIVTLPPNERCQI--------------------------GGAAAGSSKAEEK 120
           DKII LAERI  LP  ER QI                          GGAAAGSS  EEK
Sbjct: 61  DKIIALAERIAALPAAERSQIGPTLGEKLRHPKLQEISVDGLDMGSEGGAAAGSSNVEEK 120

Query: 121 EEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 168
           +EKTAFDVKLEKFD+ASKIKVIKEVR+FTNLGLKEAKDLVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180

[Close]
BLAST of IVF0021329 vs. ExPASy TrEMBL
Match: A0A5A7U2A3 (50S ribosomal protein L7/L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G00400 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 4.1e-65
Identity = 144/193 (74.61%), Postives = 152/193 (78.76%), Query Frame = 0 

Query: 1   MKLTMVARSLRVHSTLTKIIGLSQVRFFQPDFTTRDPNSKPKIHKYPPFYDPYGPKPSPS 60
           MKLT+VARSL+  STLTKIIGLSQVRFFQPDFT RDP +KPK +KYPPFYDPYGP+P PS
Sbjct: 1   MKLTVVARSLQARSTLTKIIGLSQVRFFQPDFTPRDPKAKPKKYKYPPFYDPYGPRPPPS 60

Query: 61  DKIIELAERIVTLPPNERCQI--------------------------GGAAAGSSKAEEK 120
           DKII LAERI  LP  ER QI                          GGAAAGSS  EEK
Sbjct: 61  DKIIALAERIAALPAAERSQIGPTLGEKLRHPKLQEISVDGLDMGSEGGAAAGSSNVEEK 120

Query: 121 EEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 168
           +EKTAFDVKLEKFD+ASKIKVIKEVR+FTNLGLKEAKDLVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180

[Close]
BLAST of IVF0021329 vs. ExPASy TrEMBL
Match: A0A6J1DM08 (uncharacterized protein LOC111022207 OS=Momordica charantia OX=3673 GN=LOC111022207 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 9.2e-65
Identity = 141/193 (73.06%), Postives = 152/193 (78.76%), Query Frame = 0 

Query: 1   MKLTMVARSLRVHSTLTKIIGLSQVRFFQPDFTTRDPNSKPKIHKYPPFYDPYGPKPSPS 60
           MKL  VARSL+VHSTL K+IG  QVRFFQPDF  RD  +KPK +KYPPFYDPYGP+P PS
Sbjct: 1   MKLVAVARSLQVHSTLPKVIGSFQVRFFQPDFAPRDSTAKPKRYKYPPFYDPYGPRPPPS 60

Query: 61  DKIIELAERIVTLPPNERCQI--------------------------GGAAAGSSKAEEK 120
           DKII+LAE+IV LP +ERCQI                          GGA AGSSK EEK
Sbjct: 61  DKIIQLAEKIVALPVDERCQIGPALTERLRHPKLQPISVDGLDMGSEGGAGAGSSKVEEK 120

Query: 121 EEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 168
           +EKTAFDVKLEKFD+A+KIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII
Sbjct: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180

[Close]
BLAST of IVF0021329 vs. ExPASy TrEMBL
Match: A0A6J1GD07 (uncharacterized protein LOC111452831 OS=Cucurbita moschata OX=3662 GN=LOC111452831 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 2.3e-63
Identity = 138/193 (71.50%), Postives = 152/193 (78.76%), Query Frame = 0 

Query: 1   MKLTMVARSLRVHSTLTKIIGLSQVRFFQPDFTTRDPNSKPKIHKYPPFYDPYGPKPSPS 60
           MK+  VA+SL+  STL KIIGL QVRFFQPDFT RDPN+KPK +KYPPFYDPYGP+P PS
Sbjct: 1   MKMIAVAQSLQARSTLPKIIGLLQVRFFQPDFTPRDPNAKPKRYKYPPFYDPYGPRPPPS 60

Query: 61  DKIIELAERIVTLPPNERCQI--------------------------GGAAAGSSKAEEK 120
           +KII+LAERI  LP +ERCQI                          GGAA GSSK EEK
Sbjct: 61  NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK 120

Query: 121 EEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 168
           +EKTAFDVKLEKF++A+KIKVIKEVR+FTNLGLKEAKDLVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180

[Close]
BLAST of IVF0021329 vs. NCBI nr
Match: XP_038905834.1 (50S ribosomal protein L7/L12 [Benincasa hispida] >XP_038905841.1 50S ribosomal protein L7/L12 [Benincasa hispida])

HSP 1 Score: 263 bits (671), Expect = 2.92e-86
Identity = 145/193 (75.13%), Postives = 153/193 (79.27%), Query Frame = 0 

Query: 1   MKLTMVARSLRVHSTLTKIIGLSQVRFFQPDFTTRDPNSKPKIHKYPPFYDPYGPKPSPS 60
           MKLT+VARSL+V ST  KIIGLSQVRFFQ DF  RDPN+KPK +KYPPFYDPYGP+P PS
Sbjct: 1   MKLTVVARSLQVRSTFAKIIGLSQVRFFQSDFALRDPNAKPKRYKYPPFYDPYGPRPPPS 60

Query: 61  DKIIELAERIVTLPPNERCQIG--------------------------GAAAGSSKAEEK 120
           DKIIELAERI  LP  +RCQIG                          GA AGSSK EEK
Sbjct: 61  DKIIELAERIAALPAEDRCQIGPTLRERLKHPKLQPISVDGLDMGSEGGAGAGSSKVEEK 120

Query: 121 EEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 167
           +EKTAFDVKLEKFD+ASKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII
Sbjct: 121 KEKTAFDVKLEKFDAASKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180

[Close]
BLAST of IVF0021329 vs. NCBI nr
Match: XP_011651634.1 (uncharacterized protein LOC101206962 [Cucumis sativus] >XP_011651635.1 uncharacterized protein LOC101206962 [Cucumis sativus] >KGN58328.1 hypothetical protein Csa_017468 [Cucumis sativus])

HSP 1 Score: 261 bits (666), Expect = 1.68e-85
Identity = 145/193 (75.13%), Postives = 154/193 (79.79%), Query Frame = 0 

Query: 1   MKLTMVARSLRVHSTLTKIIGLSQVRFFQPDFTTRDPNSKPKIHKYPPFYDPYGPKPSPS 60
           MKLT+VA+SL+V ST  KIIGLSQVRFFQPDFT RDPN+KPK +KYP FYDPYGP+P PS
Sbjct: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60

Query: 61  DKIIELAERIVTLPPNERCQIG--------------------------GAAAGSSKAEEK 120
           DKIIELAERIV LP  ERCQIG                          GAAAGSS  EEK
Sbjct: 61  DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120

Query: 121 EEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 167
           +EKTAFDVKLEKFD+ASKIKVIKEVR+FTNLGLKEAKDLVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180

[Close]
BLAST of IVF0021329 vs. NCBI nr
Match: XP_008450561.1 (PREDICTED: 50S ribosomal protein L7/L12 [Cucumis melo] >XP_008450569.1 PREDICTED: 50S ribosomal protein L7/L12 [Cucumis melo] >XP_008450588.1 PREDICTED: 50S ribosomal protein L7/L12 [Cucumis melo] >XP_008450597.1 PREDICTED: 50S ribosomal protein L7/L12 [Cucumis melo] >XP_016902379.1 PREDICTED: 50S ribosomal protein L7/L12 [Cucumis melo] >KAA0047609.1 50S ribosomal protein L7/L12 [Cucumis melo var. makuwa] >TYK08266.1 50S ribosomal protein L7/L12 [Cucumis melo var. makuwa])

HSP 1 Score: 257 bits (657), Expect = 3.94e-84
Identity = 144/193 (74.61%), Postives = 152/193 (78.76%), Query Frame = 0 

Query: 1   MKLTMVARSLRVHSTLTKIIGLSQVRFFQPDFTTRDPNSKPKIHKYPPFYDPYGPKPSPS 60
           MKLT+VARSL+  STLTKIIGLSQVRFFQPDFT RDP +KPK +KYPPFYDPYGP+P PS
Sbjct: 1   MKLTVVARSLQARSTLTKIIGLSQVRFFQPDFTPRDPKAKPKKYKYPPFYDPYGPRPPPS 60

Query: 61  DKIIELAERIVTLPPNERCQIG--------------------------GAAAGSSKAEEK 120
           DKII LAERI  LP  ER QIG                          GAAAGSS  EEK
Sbjct: 61  DKIIALAERIAALPAAERSQIGPTLGEKLRHPKLQEISVDGLDMGSEGGAAAGSSNVEEK 120

Query: 121 EEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 167
           +EKTAFDVKLEKFD+ASKIKVIKEVR+FTNLGLKEAKDLVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180

[Close]
BLAST of IVF0021329 vs. NCBI nr
Match: XP_022155073.1 (uncharacterized protein LOC111022207 [Momordica charantia] >XP_022155074.1 uncharacterized protein LOC111022207 [Momordica charantia])

HSP 1 Score: 256 bits (654), Expect = 1.13e-83
Identity = 141/193 (73.06%), Postives = 152/193 (78.76%), Query Frame = 0 

Query: 1   MKLTMVARSLRVHSTLTKIIGLSQVRFFQPDFTTRDPNSKPKIHKYPPFYDPYGPKPSPS 60
           MKL  VARSL+VHSTL K+IG  QVRFFQPDF  RD  +KPK +KYPPFYDPYGP+P PS
Sbjct: 1   MKLVAVARSLQVHSTLPKVIGSFQVRFFQPDFAPRDSTAKPKRYKYPPFYDPYGPRPPPS 60

Query: 61  DKIIELAERIVTLPPNERCQIG--------------------------GAAAGSSKAEEK 120
           DKII+LAE+IV LP +ERCQIG                          GA AGSSK EEK
Sbjct: 61  DKIIQLAEKIVALPVDERCQIGPALTERLRHPKLQPISVDGLDMGSEGGAGAGSSKVEEK 120

Query: 121 EEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 167
           +EKTAFDVKLEKFD+A+KIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII
Sbjct: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180

[Close]
BLAST of IVF0021329 vs. NCBI nr
Match: XP_022949504.1 (uncharacterized protein LOC111452831 [Cucurbita moschata])

HSP 1 Score: 251 bits (642), Expect = 7.53e-82
Identity = 138/193 (71.50%), Postives = 152/193 (78.76%), Query Frame = 0 

Query: 1   MKLTMVARSLRVHSTLTKIIGLSQVRFFQPDFTTRDPNSKPKIHKYPPFYDPYGPKPSPS 60
           MK+  VA+SL+  STL KIIGL QVRFFQPDFT RDPN+KPK +KYPPFYDPYGP+P PS
Sbjct: 1   MKMIAVAQSLQARSTLPKIIGLLQVRFFQPDFTPRDPNAKPKRYKYPPFYDPYGPRPPPS 60

Query: 61  DKIIELAERIVTLPPNERCQIG--------------------------GAAAGSSKAEEK 120
           +KII+LAERI  LP +ERCQIG                          GAA GSSK EEK
Sbjct: 61  NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK 120

Query: 121 EEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 167
           +EKTAFDVKLEKF++A+KIKVIKEVR+FTNLGLKEAKDLVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180

[Close]
BLAST of IVF0021329 vs. TAIR 10
Match: AT3G06040.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 186.0 bits (471), Expect = 2.9e-47
Identity = 108/189 (57.14%), Postives = 129/189 (68.25%), Query Frame = 0 

Query: 1   MKLTMVARSLRVHSTLTKIIGLSQVRFFQPDFTTRDPNSKPKIHKYPPFYDPYGPKPSPS 60
           MKL  + R++R      ++I   QVRF Q D  ++   +KPK +KYP  YDPYGP+P PS
Sbjct: 1   MKLISLVRNVRSRQCQPEVIWSVQVRFLQQDSVSK---AKPKKYKYPSVYDPYGPRPQPS 60

Query: 61  DKIIELAERIVTLPPNERCQIGGAA----------------------AGSSKAEEKEEKT 120
            KI+ELAERI  L P ER QIG A                        G+   EEK+EKT
Sbjct: 61  SKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMISSDGIGAKQDTGAGNVEEKKEKT 120

Query: 121 AFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDIIEKIK 168
           AFDVKLEKF+++ KIKVIKEVR+FT+LGLKEAK+LVEKVPAILKQGVTKEEAN+II KIK
Sbjct: 121 AFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQGVTKEEANEIIAKIK 180

[Close]
BLAST of IVF0021329 vs. TAIR 10
Match: AT3G06040.2 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 186.0 bits (471), Expect = 2.9e-47
Identity = 108/189 (57.14%), Postives = 129/189 (68.25%), Query Frame = 0 

Query: 1   MKLTMVARSLRVHSTLTKIIGLSQVRFFQPDFTTRDPNSKPKIHKYPPFYDPYGPKPSPS 60
           MKL  + R++R      ++I   QVRF Q D  ++   +KPK +KYP  YDPYGP+P PS
Sbjct: 1   MKLISLVRNVRSRQCQPEVIWSVQVRFLQQDSVSK---AKPKKYKYPSVYDPYGPRPQPS 60

Query: 61  DKIIELAERIVTLPPNERCQIGGAA----------------------AGSSKAEEKEEKT 120
            KI+ELAERI  L P ER QIG A                        G+   EEK+EKT
Sbjct: 61  SKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMISSDGIGAKQDTGAGNVEEKKEKT 120

Query: 121 AFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDIIEKIK 168
           AFDVKLEKF+++ KIKVIKEVR+FT+LGLKEAK+LVEKVPAILKQGVTKEEAN+II KIK
Sbjct: 121 AFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQGVTKEEANEIIAKIK 180

[Close]
BLAST of IVF0021329 vs. TAIR 10
Match: AT3G06040.3 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 186.0 bits (471), Expect = 2.9e-47
Identity = 108/189 (57.14%), Postives = 129/189 (68.25%), Query Frame = 0 

Query: 1   MKLTMVARSLRVHSTLTKIIGLSQVRFFQPDFTTRDPNSKPKIHKYPPFYDPYGPKPSPS 60
           MKL  + R++R      ++I   QVRF Q D  ++   +KPK +KYP  YDPYGP+P PS
Sbjct: 1   MKLISLVRNVRSRQCQPEVIWSVQVRFLQQDSVSK---AKPKKYKYPSVYDPYGPRPQPS 60

Query: 61  DKIIELAERIVTLPPNERCQIGGAA----------------------AGSSKAEEKEEKT 120
            KI+ELAERI  L P ER QIG A                        G+   EEK+EKT
Sbjct: 61  SKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMISSDGIGAKQDTGAGNVEEKKEKT 120

Query: 121 AFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDIIEKIK 168
           AFDVKLEKF+++ KIKVIKEVR+FT+LGLKEAK+LVEKVPAILKQGVTKEEAN+II KIK
Sbjct: 121 AFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQGVTKEEANEIIAKIK 180

[Close]
BLAST of IVF0021329 vs. TAIR 10
Match: AT4G36420.1 (Ribosomal protein L12 family protein )

HSP 1 Score: 101.3 bits (251), Expect = 9.5e-22
Identity = 54/84 (64.29%), Postives = 65/84 (77.38%), Query Frame = 0 

Query: 84  AAAGSSKAEEKEEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQ 143
           +A G  K ++KE KTAFDV L+ +D+ SKIKVIKEVR+ T LGLKEAKDLVEK P +LK+
Sbjct: 96  SAGGEGKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLLKK 155

Query: 144 GVTKEEANDIIEKIKAAGGVAVME 168
           GV+KEEA  IIEK+KA G    ME
Sbjct: 156 GVSKEEAEKIIEKLKAVGAKVAME 179

[Close]
BLAST of IVF0021329 vs. TAIR 10
Match: AT4G37660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 99.8 bits (247), Expect = 2.8e-21
Identity = 52/82 (63.41%), Postives = 65/82 (79.27%), Query Frame = 0 

Query: 86  AGSSKAEEKEEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGV 145
           A +S   +  EKT FDVKLEKF++ASKIKVIKE+R+FT+LGLKEAK LVEK P I+K G+
Sbjct: 86  ASASTETKTAEKTTFDVKLEKFEAASKIKVIKEIRAFTDLGLKEAKALVEKAPVIVKNGL 145

Query: 146 TKEEANDIIEKIKAAGGVAVME 168
           TKEEA  I+EK+KA G +  +E
Sbjct: 146 TKEEAEKIMEKLKAVGAIVALE 167

The following BLAST results are available for this feature:
BLAST of IVF0021329 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A2C0312.9e-1554.1250S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain NATL1A) OX=16755... [more]
Q46HH28.4e-1552.9450S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain NATL2A) OX=59920... [more]
A9BDG41.2e-1352.3350S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) OX=930... [more]
Q7U3T91.2e-1350.5950S ribosomal protein L7/L12 OS=Synechococcus sp. (strain WH8102) OX=84588 GN=rp... [more]
P411891.6e-1351.8150S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=... [more]
BLAST of IVF0021329 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9073.7e-6675.13Ribosomal_L12 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G6239... [more]
A0A1S3BPI34.1e-6574.6150S ribosomal protein L7/L12 OS=Cucumis melo OX=3656 GN=LOC103492120 PE=4 SV=1[more]
A0A5A7U2A34.1e-6574.6150S ribosomal protein L7/L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A6J1DM089.2e-6573.06uncharacterized protein LOC111022207 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1GD072.3e-6371.50uncharacterized protein LOC111452831 OS=Cucurbita moschata OX=3662 GN=LOC1114528... [more]
BLAST of IVF0021329 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038905834.12.92e-8675.1350S ribosomal protein L7/L12 [Benincasa hispida] >XP_038905841.1 50S ribosomal p... [more]
XP_011651634.11.68e-8575.13uncharacterized protein LOC101206962 [Cucumis sativus] >XP_011651635.1 uncharact... [more]
XP_008450561.13.94e-8474.61PREDICTED: 50S ribosomal protein L7/L12 [Cucumis melo] >XP_008450569.1 PREDICTED... [more]
XP_022155073.11.13e-8373.06uncharacterized protein LOC111022207 [Momordica charantia] >XP_022155074.1 uncha... [more]
XP_022949504.17.53e-8271.50uncharacterized protein LOC111452831 [Cucurbita moschata][more]
BLAST of IVF0021329 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G06040.12.9e-4757.14Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr... [more]
AT3G06040.22.9e-4757.14Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr... [more]
AT3G06040.32.9e-4757.14Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr... [more]
AT4G36420.19.5e-2264.29Ribosomal protein L12 family protein [more]
AT4G37660.12.8e-2163.41Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeGENE3D3.30.1390.10coord: 93..166
e-value: 1.5E-23
score: 84.6
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeSUPERFAMILY54736ClpS-likecoord: 95..166
IPR013823Ribosomal protein L7/L12, C-terminalPFAMPF00542Ribosomal_L12coord: 100..163
e-value: 2.0E-22
score: 79.3
IPR000206Ribosomal protein L7/L12PANTHERPTHR4598739S RIBOSOMAL PROTEIN L12coord: 84..167
coord: 1..83
IPR000206Ribosomal protein L7/L12CDDcd00387Ribosomal_L7_L12coord: 80..166
e-value: 4.25843E-39
score: 128.812
NoneNo IPR availablePANTHERPTHR45987:SF6RIBOSOMAL PROTEIN L12/ ATP-DEPENDENT CLP PROTEASE ADAPTOR PROTEIN CLPS FAMILY PROTEINcoord: 1..83
NoneNo IPR availablePANTHERPTHR45987:SF6RIBOSOMAL PROTEIN L12/ ATP-DEPENDENT CLP PROTEASE ADAPTOR PROTEIN CLPS FAMILY PROTEINcoord: 84..167

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0021329.2IVF0021329.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome