IVF0021218 (gene) Melon (IVF77) v1

Overview


Name	IVF0021218
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	R3H domain-containing protein 2-like
Location	chr08: 6091853 .. 6092149 (-)
RNA-Seq Expression	IVF0021218
Synteny	IVF0021218

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCCCTTCTTCATCCCCTAACAAGAATTCCATATCCTTGGACCACCCTGTTGCCGATGCTGTTACTGCCTATCATTTTTTATTCCGCTTCGTTGCTTCGGCTTCTTCTGCTCTCGATAGGGTTTCCGAGGATGCTATCAATCCGGTTGATCGGTTCCTTCGTGAGGAGGCTTTGCACAACCCTGGCAAGCGTCTATCAAGTAAGTTGTTTATTTAGCTTTCCCGTATCGTGGATGGTGTGATTGGATTCAGGAGTTCTATAATGTCATGTTCGGTAGAGGGAGGAGAAAATTAA

mRNA sequence

ATGCTCCCTTCTTCATCCCCTAACAAGAATTCCATATCCTTGGACCACCCTGTTGCCGATGCTGTTACTGCCTATCATTTTTTATTCCGCTTCGTTGCTTCGGCTTCTTCTGCTCTCGATAGGGTTTCCGAGGATGCTATCAATCCGGTTGATCGGTTCCTTCGTGAGGAGGCTTTGCACAACCCTGGCAAGCGTCTATCAAAGGGAGGAGAAAATTAA

Coding sequence (CDS)

ATGCTCCCTTCTTCATCCCCTAACAAGAATTCCATATCCTTGGACCACCCTGTTGCCGATGCTGTTACTGCCTATCATTTTTTATTCCGCTTCGTTGCTTCGGCTTCTTCTGCTCTCGATAGGGTTTCCGAGGATGCTATCAATCCGGTTGATCGGTTCCTTCGTGAGGAGGCTTTGCACAACCCTGGCAAGCGTCTATCAAAGGGAGGAGAAAATTAA

Protein sequence

MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALHNPGKRLSKGGEN

Homology

[Close]

BLAST of IVF0021218 vs. ExPASy TrEMBL
Match: A0A1S3B3D2 (uncharacterized protein LOC103485359 OS=Cucumis melo OX=3656 GN=LOC103485359 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.9e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALH 60
          MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALH
Sbjct: 1  MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALH 60

Query: 61 NPGKRLSK 69
          NPGKRLSK
Sbjct: 61 NPGKRLSK 68

[Close]

BLAST of IVF0021218 vs. ExPASy TrEMBL
Match: A0A5D3CQ27 (R3H domain-containing protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001070 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.9e-28
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1   MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALH 60
           MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALH
Sbjct: 73  MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALH 132

Query: 61  NPGKRLS 68
           NPGKRLS
Sbjct: 133 NPGKRLS 139

[Close]

BLAST of IVF0021218 vs. ExPASy TrEMBL
Match: A0A1S3BGI0 (R3H domain-containing protein 2-like OS=Cucumis melo OX=3656 GN=LOC103489394 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.9e-12
Identity = 51/71 (71.83%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 1  MLPSSSPNKNSISLDHPVADAVTAYHF----LFRFVASASSALDRVSEDAINPVDRFLRE 60
          MLPSSSP KNS SLD  VADA  AYHF         ASASSALDRVSEDAIN VD+FLR 
Sbjct: 28 MLPSSSPKKNSKSLD--VADAAPAYHFSSASFPSLSASASSALDRVSEDAINQVDQFLR- 87

Query: 61 EALHNPGKRLS 68
          EALHNP +RLS
Sbjct: 88 EALHNPRERLS 95

[Close]

BLAST of IVF0021218 vs. ExPASy TrEMBL
Match: A0A5D3CFX4 (R3H domain-containing protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002020 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.9e-12
Identity = 51/71 (71.83%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 1  MLPSSSPNKNSISLDHPVADAVTAYHF----LFRFVASASSALDRVSEDAINPVDRFLRE 60
          MLPSSSP KNS SLD  VADA  AYHF         ASASSALDRVSEDAIN VD+FLR 
Sbjct: 28 MLPSSSPKKNSKSLD--VADAAPAYHFSSASFPSLSASASSALDRVSEDAINQVDQFLR- 87

Query: 61 EALHNPGKRLS 68
          EALHNP +RLS
Sbjct: 88 EALHNPRERLS 95

[Close]

BLAST of IVF0021218 vs. ExPASy TrEMBL
Match: A0A6J1HWM6 (R3H domain-containing protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111467527 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.3e-09
Identity = 44/71 (61.97%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 1  MLPSSSPNKNSISLDHPVADAVTAYHFLFRFV----ASASSALDRVSEDAINPVDRFLRE 60
          MLPSSSP KNS SLDH VADA    H          AS SS  DR SED IN VD+FLR 
Sbjct: 28 MLPSSSPLKNSKSLDHSVADAALGSHSSSASFPSPSASTSSTPDRASEDVINQVDQFLR- 87

Query: 61 EALHNPGKRLS 68
          EALHNP +RLS
Sbjct: 88 EALHNPRERLS 97

[Close]

BLAST of IVF0021218 vs. NCBI nr
Match: XP_008441130.1 (PREDICTED: uncharacterized protein LOC103485359 [Cucumis melo])

HSP 1 Score: 137 bits (346), Expect = 7.55e-40
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALH 60
          MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALH
Sbjct: 1  MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALH 60

Query: 61 NPGKRLSK 68
          NPGKRLSK
Sbjct: 61 NPGKRLSK 68

[Close]

BLAST of IVF0021218 vs. NCBI nr
Match: KAA0025653.1 (R3H domain-containing protein 2-like [Cucumis melo var. makuwa] >TYK12526.1 R3H domain-containing protein 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 135 bits (341), Expect = 5.38e-39
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1   MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALH 60
           MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALH
Sbjct: 73  MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALH 132

Query: 61  NPGKRLS 67
           NPGKRLS
Sbjct: 133 NPGKRLS 139

[Close]

BLAST of IVF0021218 vs. NCBI nr
Match: XP_038892280.1 (uncharacterized protein LOC120081466 [Benincasa hispida])

HSP 1 Score: 86.7 bits (213), Expect = 9.08e-18
Identity = 50/71 (70.42%), Postives = 52/71 (73.24%), Query Frame = 0


Query: 1  MLPSSSPNKNSISLDHPVADAVTAYHFLFR----FVASASSALDRVSEDAINPVDRFLRE 60
          MLPSSSP KNS SLDH VADA  AYHF         AS SS LDRVSEDAIN VD+FLRE
Sbjct: 28 MLPSSSPKKNSKSLDHSVADAAPAYHFSSASFPSLSASPSSTLDRVSEDAINQVDQFLRE 87

Query: 61 EALHNPGKRLS 67
           ALHNP +RLS
Sbjct: 88 -ALHNPRERLS 97

[Close]

BLAST of IVF0021218 vs. NCBI nr
Match: XP_008446764.1 (PREDICTED: R3H domain-containing protein 2-like [Cucumis melo] >XP_008446765.1 PREDICTED: R3H domain-containing protein 2-like [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 2.91e-16
Identity = 51/71 (71.83%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 1  MLPSSSPNKNSISLDHPVADAVTAYHFLFR----FVASASSALDRVSEDAINPVDRFLRE 60
          MLPSSSP KNS SLD  VADA  AYHF         ASASSALDRVSEDAIN VD+FLRE
Sbjct: 28 MLPSSSPKKNSKSLD--VADAAPAYHFSSASFPSLSASASSALDRVSEDAINQVDQFLRE 87

Query: 61 EALHNPGKRLS 67
           ALHNP +RLS
Sbjct: 88 -ALHNPRERLS 95

[Close]

BLAST of IVF0021218 vs. NCBI nr
Match: KAA0034658.1 (R3H domain-containing protein 2-like [Cucumis melo var. makuwa] >TYK09209.1 R3H domain-containing protein 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 3.16e-16
Identity = 51/71 (71.83%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 1  MLPSSSPNKNSISLDHPVADAVTAYHFLFR----FVASASSALDRVSEDAINPVDRFLRE 60
          MLPSSSP KNS SLD  VADA  AYHF         ASASSALDRVSEDAIN VD+FLRE
Sbjct: 28 MLPSSSPKKNSKSLD--VADAAPAYHFSSASFPSLSASASSALDRVSEDAINQVDQFLRE 87

Query: 61 EALHNPGKRLS 67
           ALHNP +RLS
Sbjct: 88 -ALHNPRERLS 95

The following BLAST results are available for this feature:

BLAST of IVF0021218 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0021218 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B3D2	4.9e-29	100.00	uncharacterized protein LOC103485359 OS=Cucumis melo OX=3656 GN=LOC103485359 PE=...	[more]
A0A5D3CQ27	1.9e-28	100.00	R3H domain-containing protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3BGI0	1.9e-12	71.83	R3H domain-containing protein 2-like OS=Cucumis melo OX=3656 GN=LOC103489394 PE=...	[more]
A0A5D3CFX4	1.9e-12	71.83	R3H domain-containing protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A6J1HWM6	3.3e-09	61.97	R3H domain-containing protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111467527...	[more]

BLAST of IVF0021218 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441130.1	7.55e-40	100.00	PREDICTED: uncharacterized protein LOC103485359 [Cucumis melo]	[more]
KAA0025653.1	5.38e-39	100.00	R3H domain-containing protein 2-like [Cucumis melo var. makuwa] >TYK12526.1 R3H ...	[more]
XP_038892280.1	9.08e-18	70.42	uncharacterized protein LOC120081466 [Benincasa hispida]	[more]
XP_008446764.1	2.91e-16	71.83	PREDICTED: R3H domain-containing protein 2-like [Cucumis melo] >XP_008446765.1 P...	[more]
KAA0034658.1	3.16e-16	71.83	R3H domain-containing protein 2-like [Cucumis melo var. makuwa] >TYK09209.1 R3H ...	[more]

BLAST of IVF0021218 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0021218.1	IVF0021218.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding