IVF0021207 (gene) Melon (IVF77) v1

Overview
NameIVF0021207
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr11: 3751172 .. 3751660 (+)
RNA-Seq ExpressionIVF0021207
SyntenyIVF0021207
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAAATAGTGAATTCAAGGAGAGATCGAACGGTATTACCCACTGAAAAATCACTAAAGAAAACTCAATACCTTGCTGTATAGCGTTCCAAACTGTTGAAAAACTGAGATTGGAAGCCGGAACCGAATGGGTGAGACAATTCAAGGTCCAACGAATCGTGGGTAACGTAGACGGATGCCCAACTGAGAAAAATTCAGCATTTTTGAGCTGCTGCTTCTGCTTTACGTGGATCTTAGACAACCGAAGGTGGTGCCCGGCGACTGAAGACGGCAGTAGCTGCAATGGAGAGAGAGAGAGAGAAAGAGACCGACTTGCGTACCTCCGACTGACTGCCGCGGCGTGCGACGGTACCAGCTTGGGTGCTGACGTGAAGGAGGCGGTCGACGGCGGGAATGTGGCGTGGGGGTGGTGGGAACGGTTGAGACTACAAGGAGAGGGTGAGCGTGCGAGAGAGAGGGTAAGTTTGAAATATAGACCGACATTTTAA

mRNA sequence

ATGCTAAATAGTGAATTCAAGGAGAGATCGAACGCGTTCCAAACTGTTGAAAAACTGAGATTGGAAGCCGGAACCGAATGGGTGAGACAATTCAAGGTCCAACGAATCGTGGGTAACGTAGACGGATGCCCAACTGAGAAAAATTCAGCATTTTTGAGCTGCTGCTTCTGCTTTACGTGGATCTTAGACAACCGAAGGTGGTGCCCGGCGACTGAAGACGGCAGTAGCTGCAATGGAGAGAGAGAGAGAGAAAGAGACCGACTTGCGTACCTCCGACTGACTGCCGCGGCGTGCGACGGTACCAGCTTGGGTGCTGACGTGAAGGAGGCGGTCGACGGCGGGAATGTGGCGTGGGGGTGGTGGGAACGGTTGAGACTACAAGGAGAGGGTGAGCGTGCGAGAGAGAGGGTAAGTTTGAAATATAGACCGACATTTTAA

Coding sequence (CDS)

ATGCTAAATAGTGAATTCAAGGAGAGATCGAACGCGTTCCAAACTGTTGAAAAACTGAGATTGGAAGCCGGAACCGAATGGGTGAGACAATTCAAGGTCCAACGAATCGTGGGTAACGTAGACGGATGCCCAACTGAGAAAAATTCAGCATTTTTGAGCTGCTGCTTCTGCTTTACGTGGATCTTAGACAACCGAAGGTGGTGCCCGGCGACTGAAGACGGCAGTAGCTGCAATGGAGAGAGAGAGAGAGAAAGAGACCGACTTGCGTACCTCCGACTGACTGCCGCGGCGTGCGACGGTACCAGCTTGGGTGCTGACGTGAAGGAGGCGGTCGACGGCGGGAATGTGGCGTGGGGGTGGTGGGAACGGTTGAGACTACAAGGAGAGGGTGAGCGTGCGAGAGAGAGGGTAAGTTTGAAATATAGACCGACATTTTAA

Protein sequence

MLNSEFKERSNAFQTVEKLRLEAGTEWVRQFKVQRIVGNVDGCPTEKNSAFLSCCFCFTWILDNRRWCPATEDGSSCNGERERERDRLAYLRLTAAACDGTSLGADVKEAVDGGNVAWGWWERLRLQGEGERARERVSLKYRPTF
Homology
[Close]
BLAST of IVF0021207 vs. ExPASy TrEMBL
Match: A0A0A0LJX0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G295980 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 1.0e-49
Identity = 107/150 (71.33%), Postives = 118/150 (78.67%), Query Frame = 0 

Query: 1   MLNSEFKERSNAFQTVEKLRLEAGTEWVRQFKVQRIVGNVDGCPTEKNSAFLS-CCFCFT 60
           MLN EFKERSN FQTVEKLRLEA T+WVRQFKVQR+V NV  CPTEKNSAFLS CC CFT
Sbjct: 1   MLNIEFKERSNVFQTVEKLRLEARTKWVRQFKVQRVVSNVGKCPTEKNSAFLSCCCCCFT 60

Query: 61  WILDNRRWCPATEDGS----SCNGERERER-DRLAYLRLTAAACDGTSLGADVKEAVDGG 120
           W          TE G+    +     ERER +RLA+LR TAAACDG+SLGADVKEAVDGG
Sbjct: 61  WSY-------TTEGGARRQKTAGAAMERERKNRLAFLRRTAAACDGSSLGADVKEAVDGG 120

Query: 121 NVAWGWWERLRLQGEGERARERVSLKYRPT 145
           +VAWGWWERLRLQG GER +ERV+LK+RPT
Sbjct: 121 DVAWGWWERLRLQGRGERTKERVTLKFRPT 143

[Close]
BLAST of IVF0021207 vs. NCBI nr
Match: KAE8651951.1 (hypothetical protein Csa_006800 [Cucumis sativus])

HSP 1 Score: 115 bits (287), Expect = 2.68e-30
Identity = 53/65 (81.54%), Postives = 61/65 (93.85%), Query Frame = 0 

Query: 80  ERERERDRLAYLRLTAAACDGTSLGADVKEAVDGGNVAWGWWERLRLQGEGERARERVSL 139
           ERER ++RLA+LR TAAACDG+SLGADVKEAVDGG+VAWGWWERLRLQG GER +ERV+L
Sbjct: 24  ERER-KNRLAFLRRTAAACDGSSLGADVKEAVDGGDVAWGWWERLRLQGRGERTKERVTL 83

Query: 140 KYRPT 144
           K+RPT
Sbjct: 84  KFRPT 87

The following BLAST results are available for this feature:
BLAST of IVF0021207 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0021207 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJX01.0e-4971.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G295980 PE=4 SV=1[more]
BLAST of IVF0021207 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8651951.12.68e-3081.54hypothetical protein Csa_006800 [Cucumis sativus][more]
BLAST of IVF0021207 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0021207.2IVF0021207.2mRNA