IVF0021188 (gene) Melon (IVF77) v1

Overview


Name	IVF0021188
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	cytochrome c oxidase-assembly factor COX23, mitochondrial
Location	tig00000135: 67937 .. 69928 (-)
RNA-Seq Expression	IVF0021188
Synteny	IVF0021188

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCACTTCTAGGGATCCAGCTCCGCCCTACGCCAGTGCTGCTAGAATTTCCGATTCTCCTTGCTATCCTCAGTACAGCGCTTCCCTCAAATGTACTTTCACTCTCATACTCCCTCTCCATTATTCTCATTTTTTTTTTTTTGTTTTTCTATAATTCTCCGCCAGAAATTTAGGTATCTGTGCTGCTGTTATCTCACAATTTGATTTTGGACTTGTTCTGCGTTGGTTCATTTGAGATTGATTGGGTGCTGCGCATCAATTGTTTTCAGTTTGTGTATTTTATGGTCAAACTCGCGAATTTGTAGTTGGCGATGATCGTGCGAACTCTACTTCTGTTGGCGTTTCTCTGTGCTATGTTACTTGAAAATTTGCTAGTCTGTTTGATTACTTTTCTAGGGTTTCTATTTCCATCGAGTTATGGTTAATTGATGAAGAGTAAGCGAACTTAAATAAATGTATTGGTGACCGTATGATAATCTTAAAAACAAAATAGATTTTGCCTGGGTATTAATTGATAAAACGCTCGTCGGAGTTCTTAGAGTGGCCGTGTTTTGAGTCCACTTACTGTTCTAACTAATGACTATGGAAAATGCTGAAAAGGAGCTTTGACTAGGATTTTGGAGCCGAATGATCATAATCCCCCTTTCCTTGGGGCCAAGTGTCATAGAAGGAATTACTAACGTGGATGGTTCTTCTGCTCCAAATCTAATTAGTCGTCAATCCGATCCAACTTCATTATTTGGCTAATTCTTTGTGCTATATTTATGAGAGGGTTTTAACTTTCTGGATATCCCCGTGTATTTGTTTGATTTAGGATAACGGATTACATATAACACATAACCCCACATATGGACAGAATAATATTTAAAAAGGTGTTTAATGCGAAAGCCTCGAGCTGCGACTTAAGGCAAGGATAAAGGTCATATACAAATTATTCATGGGAAGCATGCGTTGGTGATGGTTGTTAAGTCATGTGCAAAGTGAACTTGTAATTTGAATTTTTAAATGAGGACTATCGTTATTGATTCCGTTAAAGTGCAGCTTATCTTTGGTGTTCCATGAACCATTGAATGAGAAGTTGGTGCTTAGATTACTAATTTTTGTAGATTTGGAATTTTATTTTTATGTCAGAGAACATTTTGAACTTCTTATCAGAGAAAATTTCCTTTTCCAAATGTTGTAGGTCTTGAGGTAAATAGCTCAGAGAAGAGCAAATGTCAAGAACATTTCGATGTTTACAAGGAATGCAAGAAGAAAGAGGTATTTTCTGCTCTTAGTTATCACATGAAATTGGAATGGTGGAACATTTTATAACGTGTGGCATTGTTACTGAAAACATATGTGCTCACTATTTACGGGAGTTTGGCTTCTGAGATAATGGTACTGATTGACCAAGGTTGTAATTGCGAATGAGCAGATCCCAAAGAGGCATCAAAACATTAATATGATCTTGGTCCTCAGTAAAGTTATATTTTGATCTTTCAAGTTTTAGTAATCTCTATGTCACATACGAAAAAGTGACTACTCATTTTGTGATATCAGATTTGTATGGCAAGTGATGTATTGTATGTCTAATACTGTCTCTTCCATGTGATAACCTCTTATTAATTATACGTTGATCGGCAACAAAAAAATAGGACACCGTATTAATGGTAGATTGGATTTGAAGTTCCTGAAGCTTGCGGGTCTAAAATAAAAACTTTCTGGAAACTTGGGATTAAATTTAAAGAATTAAAATTACTCTATGACCTGAAAGATACTATGGCATATAAGAGGAGAAATATTATTGTGATTCATGATACTAAAGAAACTTTAGAGCCTATGTTAGCATTTACTTCCTTGGTTGGTGTAGTAGAGTAGCATAATGCACCAATTCTCTATCAGATGTTGTCTCTGTTTATTAAGTTTCTAACTTGAACGAGATGTGTCTTCTTTCCAGCGGGAAGCTCGGTTGGAACGCAACAAGACACGGTCTTTCTTCTCATGA

mRNA sequence

ATGGCTTCCACTTCTAGGGATCCAGCTCCGCCCTACGCCAGTGCTGCTAGAATTTCCGATTCTCCTTGCTATCCTCAGTACAGCGCTTCCCTCAAATGTCTTGAGGTAAATAGCTCAGAGAAGAGCAAATGTCAAGAACATTTCGATGTTTACAAGGAATGCAAGAAGAAAGAGCGGGAAGCTCGGTTGGAACGCAACAAGACACGGTCTTTCTTCTCATGA

Coding sequence (CDS)

ATGGCTTCCACTTCTAGGGATCCAGCTCCGCCCTACGCCAGTGCTGCTAGAATTTCCGATTCTCCTTGCTATCCTCAGTACAGCGCTTCCCTCAAATGTCTTGAGGTAAATAGCTCAGAGAAGAGCAAATGTCAAGAACATTTCGATGTTTACAAGGAATGCAAGAAGAAAGAGCGGGAAGCTCGGTTGGAACGCAACAAGACACGGTCTTTCTTCTCATGA

Protein sequence

MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKEREARLERNKTRSFFS

Homology

[Close]

BLAST of IVF0021188 vs. ExPASy Swiss-Prot
Match: Q6FQX5 (Cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) OX=284593 GN=COX23 PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.4e-04
Identity = 20/41 (48.78%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 22  PCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKEREAR 63
           PC      S KCLE+N  ++ +C+E+FD Y+ECKK+  EAR
Sbjct: 63  PCQESAKMSFKCLELNDYDRDQCKEYFDAYRECKKQWLEAR 103

[Close]

BLAST of IVF0021188 vs. ExPASy Swiss-Prot
Match: P38824 (Cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=COX23 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 5.3e-04
Identity = 21/41 (51.22%), Postives = 27/41 (65.85%), Query Frame = 0


Query: 22  PCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKEREAR 63
           PC      S +CLE N  ++SKCQE+FD Y+ECKK+   AR
Sbjct: 103 PCEESSKLSFQCLERNDYDRSKCQEYFDAYRECKKQWLTAR 143

[Close]

BLAST of IVF0021188 vs. ExPASy TrEMBL
Match: A0A5A7U004 (Cytochrome c oxidase-assembly factor COX23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003050 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.4e-31
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKERE 60
          MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKERE
Sbjct: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSFFS 74
          ARLERNKTRSFFS
Sbjct: 61 ARLERNKTRSFFS 73

[Close]

BLAST of IVF0021188 vs. ExPASy TrEMBL
Match: A0A0A0L4K5 (CHCH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G129550 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.0e-29
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKERE 60
          MASTSRDP PPY SAARISDSPCYPQYSASLKCLEV+SSEKSKCQEHFDVYKECKKKERE
Sbjct: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSFFS 74
          ARLERNKTRSFFS
Sbjct: 61 ARLERNKTRSFFS 73

[Close]

BLAST of IVF0021188 vs. ExPASy TrEMBL
Match: A0A6J1E9H8 (cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111432060 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.2e-27
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKERE 60
          MASTSRDP+PPY SAARISDSPC+PQYSASLKCLE +SSE+SKCQEHFDVYKECKKKERE
Sbjct: 1  MASTSRDPSPPYPSAARISDSPCFPQYSASLKCLEEHSSERSKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSFFS 74
          ARLERNK RSFFS
Sbjct: 61 ARLERNKKRSFFS 73

[Close]

BLAST of IVF0021188 vs. ExPASy TrEMBL
Match: A0A6J1D157 (cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111016071 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.1e-27
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKERE 60
          MAST+RD APPYASAARISDSPCYPQYSASLKCLE +SSEK+KCQEHFDVYKECKKKERE
Sbjct: 1  MASTTRDSAPPYASAARISDSPCYPQYSASLKCLEEHSSEKNKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSFFS 74
          ARLERN+ RSFFS
Sbjct: 61 ARLERNRKRSFFS 73

[Close]

BLAST of IVF0021188 vs. ExPASy TrEMBL
Match: A0A6J1ITM4 (cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111479820 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.0e-26
Identity = 65/73 (89.04%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKERE 60
          MASTSRDP PPY SAARISDSPC+ QYSASLKCLE +SSE+SKCQEHFDVYKECKKKERE
Sbjct: 1  MASTSRDPPPPYPSAARISDSPCFLQYSASLKCLEEHSSERSKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSFFS 74
          ARLERNK RSFFS
Sbjct: 61 ARLERNKKRSFFS 73

[Close]

BLAST of IVF0021188 vs. NCBI nr
Match: KAA0049122.1 (cytochrome c oxidase-assembly factor COX23 [Cucumis melo var. makuwa] >TYK17441.1 cytochrome c oxidase-assembly factor COX23 [Cucumis melo var. makuwa])

HSP 1 Score: 142 bits (359), Expect = 1.13e-42
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKERE 60
          MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKERE
Sbjct: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSFFS 73
          ARLERNKTRSFFS
Sbjct: 61 ARLERNKTRSFFS 73

[Close]

BLAST of IVF0021188 vs. NCBI nr
Match: XP_004133972.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucumis sativus] >KGN56698.1 hypothetical protein Csa_009870 [Cucumis sativus])

HSP 1 Score: 137 bits (345), Expect = 1.55e-40
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKERE 60
          MASTSRDP PPY SAARISDSPCYPQYSASLKCLEV+SSEKSKCQEHFDVYKECKKKERE
Sbjct: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSFFS 73
          ARLERNKTRSFFS
Sbjct: 61 ARLERNKTRSFFS 73

[Close]

BLAST of IVF0021188 vs. NCBI nr
Match: XP_038906947.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Benincasa hispida])

HSP 1 Score: 132 bits (333), Expect = 1.05e-38
Identity = 67/73 (91.78%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKERE 60
          MASTSRDPAPPYASAARISDSPCYPQYSASLKCLE ++SEKSKC+EHFDVYKECKKKERE
Sbjct: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEEHNSEKSKCREHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSFFS 73
          ARLERN+ RSFFS
Sbjct: 61 ARLERNRNRSFFS 73

[Close]

BLAST of IVF0021188 vs. NCBI nr
Match: XP_022924627.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucurbita moschata] >KAG6582500.1 hypothetical protein SDJN03_22502, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018885.1 hypothetical protein SDJN02_20758 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130 bits (327), Expect = 8.64e-38
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKERE 60
          MASTSRDP+PPY SAARISDSPC+PQYSASLKCLE +SSE+SKCQEHFDVYKECKKKERE
Sbjct: 1  MASTSRDPSPPYPSAARISDSPCFPQYSASLKCLEEHSSERSKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSFFS 73
          ARLERNK RSFFS
Sbjct: 61 ARLERNKKRSFFS 73

[Close]

BLAST of IVF0021188 vs. NCBI nr
Match: XP_022147041.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Momordica charantia])

HSP 1 Score: 129 bits (325), Expect = 1.75e-37
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKERE 60
          MAST+RD APPYASAARISDSPCYPQYSASLKCLE +SSEK+KCQEHFDVYKECKKKERE
Sbjct: 1  MASTTRDSAPPYASAARISDSPCYPQYSASLKCLEEHSSEKNKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSFFS 73
          ARLERN+ RSFFS
Sbjct: 61 ARLERNRKRSFFS 73

[Close]

BLAST of IVF0021188 vs. TAIR 10
Match: AT1G02160.1 (Cox19 family protein (CHCH motif) )

HSP 1 Score: 105.9 bits (263), Expect = 1.4e-23
Identity = 55/70 (78.57%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 4  TSRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKEREARL 63
          +++  A  Y SAARISDSPCY QYSASLKCLE   S+KSKCQ+HFDVYKECKKKEREARL
Sbjct: 2  STKGAAAAYPSAARISDSPCYLQYSASLKCLEEFGSDKSKCQDHFDVYKECKKKEREARL 61

Query: 64 ERNKTRSFFS 74
          ERNKTRS FS
Sbjct: 62 ERNKTRSLFS 71

[Close]

BLAST of IVF0021188 vs. TAIR 10
Match: AT1G02160.2 (Cox19 family protein (CHCH motif) )

HSP 1 Score: 81.3 bits (199), Expect = 3.6e-16
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 4  TSRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKE 59
          +++  A  Y SAARISDSPCY QYSASLKCLE   S+KSKCQ+HFDVYKECKKKE
Sbjct: 2  STKGAAAAYPSAARISDSPCYLQYSASLKCLEEFGSDKSKCQDHFDVYKECKKKE 56

The following BLAST results are available for this feature:

BLAST of IVF0021188 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6FQX5	2.4e-04	48.78	Cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Candida glabrata (s...	[more]
P38824	5.3e-04	51.22	Cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Saccharomyces cerev...	[more]

BLAST of IVF0021188 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U004	2.4e-31	100.00	Cytochrome c oxidase-assembly factor COX23 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A0A0L4K5	1.0e-29	95.89	CHCH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G129550 PE=4 S...	[more]
A0A6J1E9H8	1.2e-27	90.41	cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Cucurbita moschata ...	[more]
A0A6J1D157	2.1e-27	90.41	cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Momordica charantia...	[more]
A0A6J1ITM4	3.0e-26	89.04	cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Cucurbita maxima OX...	[more]

BLAST of IVF0021188 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0049122.1	1.13e-42	100.00	cytochrome c oxidase-assembly factor COX23 [Cucumis melo var. makuwa] >TYK17441....	[more]
XP_004133972.1	1.55e-40	95.89	cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucumis sativus] >KGN...	[more]
XP_038906947.1	1.05e-38	91.78	cytochrome c oxidase-assembly factor COX23, mitochondrial [Benincasa hispida]	[more]
XP_022924627.1	8.64e-38	90.41	cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucurbita moschata] >...	[more]
XP_022147041.1	1.75e-37	90.41	cytochrome c oxidase-assembly factor COX23, mitochondrial [Momordica charantia]	[more]

BLAST of IVF0021188 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02160.1	1.4e-23	78.57	Cox19 family protein (CHCH motif)	[more]
AT1G02160.2	3.6e-16	74.55	Cox19 family protein (CHCH motif)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010625	CHCH	PFAM	PF06747	CHCH	coord: 23..57 e-value: 1.1E-8 score: 35.0
None	No IPR available	PANTHER	PTHR48150	CYTOCHROME C OXIDASE-ASSEMBLY FACTOR COX23, MITOCHONDRIAL	coord: 3..73
None	No IPR available	PROSITE	PS51808	CHCH	coord: 20..62 score: 15.057631
IPR009069	Cysteine alpha-hairpin motif superfamily	SUPERFAMILY	47072	Cysteine alpha-hairpin motif	coord: 21..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0021188.1	IVF0021188.1	mRNA