IVF0021187 (gene) Melon (IVF77) v1

Overview


Name	IVF0021187
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr09: 327033 .. 327505 (+)
RNA-Seq Expression	IVF0021187
Synteny	IVF0021187

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGAAGACACTCATTTCCCTTCCTCTCTTATCATTTCTTCTCCTCTGCCTTTTTTCTATTTCTCATTCTCAAGGTAAGCTTTTCAGGTTTCCGTTTGAAACAATGCTTTGAGTCTGTTATCTGATCATGTTGAGAATGACCACATCCACACGAAATGCTATCTAAATATACTGATACATAGTGAAACAAATAAATCTTTGTAGTGTTGAGTTTTGCTGCCTTTCTCGTTTGTTTCGATAATAACATGTGTGTTGAAAATTGATGTATTGCGGCATGCAGGTTTTGAGAATCAATCAAAAACATGCCCAGTGAAATTCGCATCAACAGGGACATGTTCAGGGCCATTTGGTATCTCAGAATGTTACCATGAAGCAATGGCAAAATATGGAAACATTCCACCGAAGGGTTGTCAATGCATTCCTAATGGCGTTAACTCTCGCTTTTGCCTTTGCAACATTATTTGTTAA

mRNA sequence

ATGGAGAAGAAGACACTCATTTCCCTTCCTCTCTTATCATTTCTTCTCCTCTGCCTTTTTTCTATTTCTCATTCTCAAGGTTTTGAGAATCAATCAAAAACATGCCCAGTGAAATTCGCATCAACAGGGACATGTTCAGGGCCATTTGGTATCTCAGAATGTTACCATGAAGCAATGGCAAAATATGGAAACATTCCACCGAAGGGTTGTCAATGCATTCCTAATGGCGTTAACTCTCGCTTTTGCCTTTGCAACATTATTTGTTAA

Coding sequence (CDS)

ATGGAGAAGAAGACACTCATTTCCCTTCCTCTCTTATCATTTCTTCTCCTCTGCCTTTTTTCTATTTCTCATTCTCAAGGTTTTGAGAATCAATCAAAAACATGCCCAGTGAAATTCGCATCAACAGGGACATGTTCAGGGCCATTTGGTATCTCAGAATGTTACCATGAAGCAATGGCAAAATATGGAAACATTCCACCGAAGGGTTGTCAATGCATTCCTAATGGCGTTAACTCTCGCTTTTGCCTTTGCAACATTATTTGTTAA

Protein sequence

MEKKTLISLPLLSFLLLCLFSISHSQGFENQSKTCPVKFASTGTCSGPFGISECYHEAMAKYGNIPPKGCQCIPNGVNSRFCLCNIIC

Homology

[Close]

BLAST of IVF0021187 vs. ExPASy TrEMBL
Match: A0A0A0KSV3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650550 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.5e-40
Identity = 79/88 (89.77%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 1  MEKKTLISLPLLSFLLLCLFSISHSQGFENQSKTCPVKFASTGTCSGPFGISECYHEAMA 60
          MEKKT ISLPLLSFLLLCLFSI+HSQ  E+QSKTCPVKFASTGTCSGPFG+SECYHEAMA
Sbjct: 1  MEKKTFISLPLLSFLLLCLFSIAHSQDSEDQSKTCPVKFASTGTCSGPFGVSECYHEAMA 60

Query: 61 KYGNIPPKGCQCIPNGVNSRFCLCNIIC 89
          KYGNIPPKGC+CIP+G NSRFCLCNIIC
Sbjct: 61 KYGNIPPKGCECIPDGANSRFCLCNIIC 88

[Close]

BLAST of IVF0021187 vs. ExPASy TrEMBL
Match: A0A0A0KUV4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650540 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.3e-19
Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 29 ENQSKTCPVKFASTGTCSGPFGISECYHEAMAKYGNIPPKGCQCIPNGVNSRFCLCNIIC 88
          ++Q +TCPVKFASTGTC  P+G + CY E M KYGN PPK CQCIPNG NSRFC CNI C
Sbjct: 12 QDQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGDNSRFCQCNIYC 71

[Close]

BLAST of IVF0021187 vs. ExPASy TrEMBL
Match: A0A6A1WK89 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR1G002309 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.2e-06
Identity = 31/82 (37.80%), Postives = 45/82 (54.88%), Query Frame = 0


Query: 11 LLSFLLLCLFSISHSQGFENQSKTCPVKFASTGTCSGPFGISECYHEAMAKYGN--IPPK 70
          L+  L+L L  ++HS+G   ++K CP +  + G CS  FG S+C+H   AKYG    PP 
Sbjct: 8  LMLLLVLFLRLLTHSEG---EAKFCPAEITAEGQCSSMFGASDCFHHMRAKYGEAPFPPT 67

Query: 71 GCQC--IPNGVNSRFCLCNIIC 89
           C+C  IP       C C++ C
Sbjct: 68 NCKCSEIPQDSEHYTCQCDVPC 86

[Close]

BLAST of IVF0021187 vs. NCBI nr
Match: KGN52690.1 (hypothetical protein Csa_007932 [Cucumis sativus])

HSP 1 Score: 174 bits (442), Expect = 7.08e-55
Identity = 79/88 (89.77%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 1  MEKKTLISLPLLSFLLLCLFSISHSQGFENQSKTCPVKFASTGTCSGPFGISECYHEAMA 60
          MEKKT ISLPLLSFLLLCLFSI+HSQ  E+QSKTCPVKFASTGTCSGPFG+SECYHEAMA
Sbjct: 1  MEKKTFISLPLLSFLLLCLFSIAHSQDSEDQSKTCPVKFASTGTCSGPFGVSECYHEAMA 60

Query: 61 KYGNIPPKGCQCIPNGVNSRFCLCNIIC 88
          KYGNIPPKGC+CIP+G NSRFCLCNIIC
Sbjct: 61 KYGNIPPKGCECIPDGANSRFCLCNIIC 88

[Close]

BLAST of IVF0021187 vs. NCBI nr
Match: KAG6607501.1 (hypothetical protein SDJN03_00843, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 116 bits (291), Expect = 7.85e-32
Identity = 56/85 (65.88%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 4  KTLISLPLLSFLLLCLFSISHSQGFENQSKTCPVKFASTGTCSGPFGISECYHEAMAKYG 63
          K LI + LLSFLLL L S SHS    +QSKTCP +F STGTC+G  GISECY E+MA+ G
Sbjct: 7  KKLICVALLSFLLLSLVSNSHSM---DQSKTCPQQFRSTGTCAGWIGISECYSESMARNG 66

Query: 64 NIPPKGCQCIPNGVNSRFCLCNIIC 88
          NIPPKGC+CIP+GV+SR C CN++C
Sbjct: 67 NIPPKGCKCIPDGVDSRICRCNVVC 88

[Close]

BLAST of IVF0021187 vs. NCBI nr
Match: KAG6607502.1 (hypothetical protein SDJN03_00844, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114 bits (286), Expect = 4.16e-31
Identity = 54/88 (61.36%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 1  MEKKTLISLPLLSFLLLCLFSISHSQGFENQSKTCPVKFASTGTCSGPFGISECYHEAMA 60
          MEKK ++S  LLSFL+L L S SHS    +QSKTCP +F STGTC    G+SECY E+MA
Sbjct: 1  MEKKFIMSFGLLSFLVLSLVSSSHSM---DQSKTCPEEFHSTGTCGDWTGVSECYSESMA 60

Query: 61 KYGNIPPKGCQCIPNGVNSRFCLCNIIC 88
          ++GNIPPKGC+CIP G +SR C CN +C
Sbjct: 61 RHGNIPPKGCECIPKGADSRICRCNAVC 85

[Close]

BLAST of IVF0021187 vs. NCBI nr
Match: KGN52689.1 (hypothetical protein Csa_008701 [Cucumis sativus])

HSP 1 Score: 103 bits (256), Expect = 1.02e-26
Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 29 ENQSKTCPVKFASTGTCSGPFGISECYHEAMAKYGNIPPKGCQCIPNGVNSRFCLCNIIC 88
          ++Q +TCPVKFASTGTC  P+G + CY E M KYGN PPK CQCIPNG NSRFC CNI C
Sbjct: 12 QDQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGDNSRFCQCNIYC 71

[Close]

BLAST of IVF0021187 vs. NCBI nr
Match: KAG2672676.1 (hypothetical protein I3760_13G053700 [Carya illinoinensis] >KAG6630931.1 hypothetical protein CIPAW_13G055400 [Carya illinoinensis] >KAG6680685.1 hypothetical protein I3842_13G055000 [Carya illinoinensis] >KAG7949148.1 hypothetical protein I3843_13G046500 [Carya illinoinensis])

HSP 1 Score: 63.5 bits (153), Expect = 7.03e-11
Identity = 30/75 (40.00%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 18 CLFSISHSQGFENQSKTCPVKFASTGTCSGPFGISECYHEAMAKYGNIP--PKGCQC--I 77
          CL S+S     E   K CP +  + G CSG FG ++C+H+  AKYG  P  P  C+C  I
Sbjct: 17 CLLSLS-----EGSIKFCPAEMKAQGQCSGMFGTADCFHQMRAKYGEAPSPPTNCKCTPI 76

Query: 78 PNGVNSRFCLCNIIC 88
          PN + +  C C++ C
Sbjct: 77 PNDLQNYKCKCDVAC 86

The following BLAST results are available for this feature:

BLAST of IVF0021187 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0021187 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSV3	1.5e-40	89.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650550 PE=4 SV=1	[more]
A0A0A0KUV4	4.3e-19	70.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650540 PE=4 SV=1	[more]
A0A6A1WK89	3.2e-06	37.80	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR1G002309 PE=4 SV=1	[more]

BLAST of IVF0021187 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52690.1	7.08e-55	89.77	hypothetical protein Csa_007932 [Cucumis sativus]	[more]
KAG6607501.1	7.85e-32	65.88	hypothetical protein SDJN03_00843, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6607502.1	4.16e-31	61.36	hypothetical protein SDJN03_00844, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN52689.1	1.02e-26	70.00	hypothetical protein Csa_008701 [Cucumis sativus]	[more]
KAG2672676.1	7.03e-11	40.00	hypothetical protein I3760_13G053700 [Carya illinoinensis] >KAG6630931.1 hypothe...	[more]

BLAST of IVF0021187 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010682	Plant self-incompatibility response	PFAM	PF06876	SCRL	coord: 20..85 e-value: 1.2E-5 score: 25.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0021187.1	IVF0021187.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005576	extracellular region