IVF0021128 (gene) Melon (IVF77) v1

Overview


Name	IVF0021128
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr08: 31133520 .. 31133892 (-)
RNA-Seq Expression	IVF0021128
Synteny	IVF0021128

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGACGTCAAGTGCATCATCGCCGAGAGGGACGTGTTTGATCATTGGGTCCGGGTAAGAGTATGAACATAATTATATGACTAACTGGATTTTATGGAATACTAATTGCTTATTTTTTTGTGTTTTTTCTAGACGCACCCTGCAGCAAAAGGACTCTTGAACAAGCCATTTTCGCATTACGACGCATTATCGTCGTGTTTGGGAAAGATCGAGCGACGGGGGCCTGTGCGGAGACCTTTGCAGACATTGGTTCGAACGTACCGACAGACAACGATAGTGTCCCCATAGAGGATGACATCGATATGGAATTCCCCGCTATGTACAGCCTGAGGATGAACATGTCCCCTGAGGACATGATGGGCGGTAGATAA

mRNA sequence

ATGATGACGTCAAGTGCATCATCGCCGAGAGGGACGTGTTTGATCATTGGGTCCGGGACTCTTGAACAAGCCATTTTCGCATTACGACGCATTATCGTCGTGTTTGGGAAAGATCGAGCGACGGGGGCCTGTGCGGAGACCTTTGCAGACATTGGTTCGAACGTACCGACAGACAACGATAGTGTCCCCATAGAGGATGACATCGATATGGAATTCCCCGCTATGTACAGCCTGAGGATGAACATGTCCCCTGAGGACATGATGGGCGGTAGATAA

Coding sequence (CDS)

ATGATGACGTCAAGTGCATCATCGCCGAGAGGGACGTGTTTGATCATTGGGTCCGGGACTCTTGAACAAGCCATTTTCGCATTACGACGCATTATCGTCGTGTTTGGGAAAGATCGAGCGACGGGGGCCTGTGCGGAGACCTTTGCAGACATTGGTTCGAACGTACCGACAGACAACGATAGTGTCCCCATAGAGGATGACATCGATATGGAATTCCCCGCTATGTACAGCCTGAGGATGAACATGTCCCCTGAGGACATGATGGGCGGTAGATAA

Protein sequence

MMTSSASSPRGTCLIIGSGTLEQAIFALRRIIVVFGKDRATGACAETFADIGSNVPTDNDSVPIEDDIDMEFPAMYSLRMNMSPEDMMGGR

Homology

[Close]

BLAST of IVF0021128 vs. ExPASy TrEMBL
Match: A0A5A7T069 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00020 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.9e-31
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 20  TLEQAIFALRRIIVVFGKDRATGACAETFADIGSNVPTDNDSVPIEDDIDMEFPAMYSLR 79
           TLEQAIFALRRIIVVFGKDRATGACAETFADIGSNVPTDNDSVPIEDDIDMEFPAMYSLR
Sbjct: 283 TLEQAIFALRRIIVVFGKDRATGACAETFADIGSNVPTDNDSVPIEDDIDMEFPAMYSLR 342

Query: 80  MNMSPEDMMGG 91
           MNMSPEDMMGG
Sbjct: 343 MNMSPEDMMGG 353

[Close]

BLAST of IVF0021128 vs. ExPASy TrEMBL
Match: A0A5D3BUJ4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00420 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.2e-17
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 34  VFGKDRATGACAETFADIGSNVPTDNDSVPIEDDIDMEFPAMYSLRMNMSPEDMMGGR 92
           VFGKDRATGACAETFADI SNV TDNDSVP ED I+MEFPAM   RMNMSP+DMM GR
Sbjct: 51  VFGKDRATGACAETFADIDSNVQTDNDSVPAEDGINMEFPAMCRPRMNMSPKDMMSGR 108

[Close]

BLAST of IVF0021128 vs. ExPASy TrEMBL
Match: A0A5A7VAC3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G001190 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.2e-17
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 34  VFGKDRATGACAETFADIGSNVPTDNDSVPIEDDIDMEFPAMYSLRMNMSPEDMMGGR 92
           VFGKDRATGACAETFADI SNV TDNDSVP ED I+MEFPAM   RMNMSP+DMM GR
Sbjct: 164 VFGKDRATGACAETFADIDSNVQTDNDSVPAEDGINMEFPAMCRPRMNMSPKDMMSGR 221

[Close]

BLAST of IVF0021128 vs. ExPASy TrEMBL
Match: A0A5A7UA62 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00960 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-13
Identity = 43/56 (76.79%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 34 VFGKDRATGACAETFADIGSNVPTDNDSVPIEDDIDMEFPAMYSLRMNMSPEDMMG 90
          VFGKDRATG  AETF DI SNVPTDND VP EDD+D +F A+ S RMNMSPEDMMG
Sbjct: 23 VFGKDRATGDRAETFEDIASNVPTDNDRVPAEDDMDTKFLAICSPRMNMSPEDMMG 78

[Close]

BLAST of IVF0021128 vs. ExPASy TrEMBL
Match: A0A5A7UI55 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G00330 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.6e-13
Identity = 42/54 (77.78%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 37 KDRATGACAETFADIGSNVPTDNDSVPIEDDIDMEFPAMYSLRMNMSPEDMMGG 91
          KDRAT ACAETFA+I SN+P DNDSVP ED +DM+FP M+S RMNMSPEDMMGG
Sbjct: 47 KDRATEACAETFANIASNMPIDNDSVP-EDGMDMKFPTMWSPRMNMSPEDMMGG 99

[Close]

BLAST of IVF0021128 vs. NCBI nr
Match: KAA0034865.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK27334.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (362), Expect = 4.31e-39
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 20  TLEQAIFALRRIIVVFGKDRATGACAETFADIGSNVPTDNDSVPIEDDIDMEFPAMYSLR 79
           TLEQAIFALRRIIVVFGKDRATGACAETFADIGSNVPTDNDSVPIEDDIDMEFPAMYSLR
Sbjct: 283 TLEQAIFALRRIIVVFGKDRATGACAETFADIGSNVPTDNDSVPIEDDIDMEFPAMYSLR 342

Query: 80  MNMSPEDMMGG 90
           MNMSPEDMMGG
Sbjct: 343 MNMSPEDMMGG 353

[Close]

BLAST of IVF0021128 vs. NCBI nr
Match: TYK02844.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 2.06e-22
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 34  VFGKDRATGACAETFADIGSNVPTDNDSVPIEDDIDMEFPAMYSLRMNMSPEDMMGGR 91
           VFGKDRATGACAETFADI SNV TDNDSVP ED I+MEFPAM   RMNMSP+DMM GR
Sbjct: 51  VFGKDRATGACAETFADIDSNVQTDNDSVPAEDGINMEFPAMCRPRMNMSPKDMMSGR 108

[Close]

BLAST of IVF0021128 vs. NCBI nr
Match: KAA0064184.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 1.51e-21
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 34  VFGKDRATGACAETFADIGSNVPTDNDSVPIEDDIDMEFPAMYSLRMNMSPEDMMGGR 91
           VFGKDRATGACAETFADI SNV TDNDSVP ED I+MEFPAM   RMNMSP+DMM GR
Sbjct: 164 VFGKDRATGACAETFADIDSNVQTDNDSVPAEDGINMEFPAMCRPRMNMSPKDMMSGR 221

[Close]

BLAST of IVF0021128 vs. NCBI nr
Match: KAA0050379.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK03592.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 1.10e-18
Identity = 43/56 (76.79%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 34 VFGKDRATGACAETFADIGSNVPTDNDSVPIEDDIDMEFPAMYSLRMNMSPEDMMG 89
          VFGKDRATG  AETF DI SNVPTDND VP EDD+D +F A+ S RMNMSPEDMMG
Sbjct: 23 VFGKDRATGDRAETFEDIASNVPTDNDRVPAEDDMDTKFLAICSPRMNMSPEDMMG 78

[Close]

BLAST of IVF0021128 vs. NCBI nr
Match: TYJ98397.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 2.26e-18
Identity = 43/61 (70.49%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 31 IIVVFGKDRATGACAETFADIGSNVPTDNDSVPIEDDIDMEFPAMYSLRMNMSPEDMMGG 90
          ++ VF KDRATG  A+TFADI  NVP DNDSVP+ED IDMEF AM S RMN+S E MMGG
Sbjct: 26 LLYVFRKDRATGTRAKTFADIDLNVPADNDSVPVEDGIDMEFLAMSSSRMNLSSEGMMGG 85

The following BLAST results are available for this feature:

BLAST of IVF0021128 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0021128 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T069	3.9e-31	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BUJ4	4.2e-17	82.76	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VAC3	4.2e-17	82.76	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UA62	1.3e-13	76.79	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UI55	1.6e-13	77.78	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0021128 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034865.1	4.31e-39	100.00	retrotransposon protein [Cucumis melo var. makuwa] >TYK27334.1 retrotransposon p...	[more]
TYK02844.1	2.06e-22	82.76	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0064184.1	1.51e-21	82.76	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0050379.1	1.10e-18	76.79	retrotransposon protein [Cucumis melo var. makuwa] >TYK03592.1 retrotransposon p...	[more]
TYJ98397.1	2.26e-18	70.49	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0021128 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0021128.1	IVF0021128.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding