IVF0021128 (gene) Melon (IVF77) v1

Overview
NameIVF0021128
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr08: 31133520 .. 31133892 (-)
RNA-Seq ExpressionIVF0021128
SyntenyIVF0021128
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGACGTCAAGTGCATCATCGCCGAGAGGGACGTGTTTGATCATTGGGTCCGGGTAAGAGTATGAACATAATTATATGACTAACTGGATTTTATGGAATACTAATTGCTTATTTTTTTGTGTTTTTTCTAGACGCACCCTGCAGCAAAAGGACTCTTGAACAAGCCATTTTCGCATTACGACGCATTATCGTCGTGTTTGGGAAAGATCGAGCGACGGGGGCCTGTGCGGAGACCTTTGCAGACATTGGTTCGAACGTACCGACAGACAACGATAGTGTCCCCATAGAGGATGACATCGATATGGAATTCCCCGCTATGTACAGCCTGAGGATGAACATGTCCCCTGAGGACATGATGGGCGGTAGATAA

mRNA sequence

ATGATGACGTCAAGTGCATCATCGCCGAGAGGGACGTGTTTGATCATTGGGTCCGGGACTCTTGAACAAGCCATTTTCGCATTACGACGCATTATCGTCGTGTTTGGGAAAGATCGAGCGACGGGGGCCTGTGCGGAGACCTTTGCAGACATTGGTTCGAACGTACCGACAGACAACGATAGTGTCCCCATAGAGGATGACATCGATATGGAATTCCCCGCTATGTACAGCCTGAGGATGAACATGTCCCCTGAGGACATGATGGGCGGTAGATAA

Coding sequence (CDS)

ATGATGACGTCAAGTGCATCATCGCCGAGAGGGACGTGTTTGATCATTGGGTCCGGGACTCTTGAACAAGCCATTTTCGCATTACGACGCATTATCGTCGTGTTTGGGAAAGATCGAGCGACGGGGGCCTGTGCGGAGACCTTTGCAGACATTGGTTCGAACGTACCGACAGACAACGATAGTGTCCCCATAGAGGATGACATCGATATGGAATTCCCCGCTATGTACAGCCTGAGGATGAACATGTCCCCTGAGGACATGATGGGCGGTAGATAA

Protein sequence

MMTSSASSPRGTCLIIGSGTLEQAIFALRRIIVVFGKDRATGACAETFADIGSNVPTDNDSVPIEDDIDMEFPAMYSLRMNMSPEDMMGGR
Homology
BLAST of IVF0021128 vs. ExPASy TrEMBL
Match: A0A5A7T069 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00020 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.9e-31
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0

Query: 20  TLEQAIFALRRIIVVFGKDRATGACAETFADIGSNVPTDNDSVPIEDDIDMEFPAMYSLR 79
           TLEQAIFALRRIIVVFGKDRATGACAETFADIGSNVPTDNDSVPIEDDIDMEFPAMYSLR
Sbjct: 283 TLEQAIFALRRIIVVFGKDRATGACAETFADIGSNVPTDNDSVPIEDDIDMEFPAMYSLR 342

Query: 80  MNMSPEDMMGG 91
           MNMSPEDMMGG
Sbjct: 343 MNMSPEDMMGG 353

BLAST of IVF0021128 vs. ExPASy TrEMBL
Match: A0A5D3BUJ4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00420 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.2e-17
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0

Query: 34  VFGKDRATGACAETFADIGSNVPTDNDSVPIEDDIDMEFPAMYSLRMNMSPEDMMGGR 92
           VFGKDRATGACAETFADI SNV TDNDSVP ED I+MEFPAM   RMNMSP+DMM GR
Sbjct: 51  VFGKDRATGACAETFADIDSNVQTDNDSVPAEDGINMEFPAMCRPRMNMSPKDMMSGR 108

BLAST of IVF0021128 vs. ExPASy TrEMBL
Match: A0A5A7VAC3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G001190 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.2e-17
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0

Query: 34  VFGKDRATGACAETFADIGSNVPTDNDSVPIEDDIDMEFPAMYSLRMNMSPEDMMGGR 92
           VFGKDRATGACAETFADI SNV TDNDSVP ED I+MEFPAM   RMNMSP+DMM GR
Sbjct: 164 VFGKDRATGACAETFADIDSNVQTDNDSVPAEDGINMEFPAMCRPRMNMSPKDMMSGR 221

BLAST of IVF0021128 vs. ExPASy TrEMBL
Match: A0A5A7UA62 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00960 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-13
Identity = 43/56 (76.79%), Postives = 46/56 (82.14%), Query Frame = 0

Query: 34 VFGKDRATGACAETFADIGSNVPTDNDSVPIEDDIDMEFPAMYSLRMNMSPEDMMG 90
          VFGKDRATG  AETF DI SNVPTDND VP EDD+D +F A+ S RMNMSPEDMMG
Sbjct: 23 VFGKDRATGDRAETFEDIASNVPTDNDRVPAEDDMDTKFLAICSPRMNMSPEDMMG 78

BLAST of IVF0021128 vs. ExPASy TrEMBL
Match: A0A5A7UI55 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G00330 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.6e-13
Identity = 42/54 (77.78%), Postives = 47/54 (87.04%), Query Frame = 0

Query: 37 KDRATGACAETFADIGSNVPTDNDSVPIEDDIDMEFPAMYSLRMNMSPEDMMGG 91
          KDRAT ACAETFA+I SN+P DNDSVP ED +DM+FP M+S RMNMSPEDMMGG
Sbjct: 47 KDRATEACAETFANIASNMPIDNDSVP-EDGMDMKFPTMWSPRMNMSPEDMMGG 99

BLAST of IVF0021128 vs. NCBI nr
Match: KAA0034865.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK27334.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (362), Expect = 4.31e-39
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0

Query: 20  TLEQAIFALRRIIVVFGKDRATGACAETFADIGSNVPTDNDSVPIEDDIDMEFPAMYSLR 79
           TLEQAIFALRRIIVVFGKDRATGACAETFADIGSNVPTDNDSVPIEDDIDMEFPAMYSLR
Sbjct: 283 TLEQAIFALRRIIVVFGKDRATGACAETFADIGSNVPTDNDSVPIEDDIDMEFPAMYSLR 342

Query: 80  MNMSPEDMMGG 90
           MNMSPEDMMGG
Sbjct: 343 MNMSPEDMMGG 353

BLAST of IVF0021128 vs. NCBI nr
Match: TYK02844.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 2.06e-22
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0

Query: 34  VFGKDRATGACAETFADIGSNVPTDNDSVPIEDDIDMEFPAMYSLRMNMSPEDMMGGR 91
           VFGKDRATGACAETFADI SNV TDNDSVP ED I+MEFPAM   RMNMSP+DMM GR
Sbjct: 51  VFGKDRATGACAETFADIDSNVQTDNDSVPAEDGINMEFPAMCRPRMNMSPKDMMSGR 108

BLAST of IVF0021128 vs. NCBI nr
Match: KAA0064184.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 1.51e-21
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0

Query: 34  VFGKDRATGACAETFADIGSNVPTDNDSVPIEDDIDMEFPAMYSLRMNMSPEDMMGGR 91
           VFGKDRATGACAETFADI SNV TDNDSVP ED I+MEFPAM   RMNMSP+DMM GR
Sbjct: 164 VFGKDRATGACAETFADIDSNVQTDNDSVPAEDGINMEFPAMCRPRMNMSPKDMMSGR 221

BLAST of IVF0021128 vs. NCBI nr
Match: KAA0050379.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK03592.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 1.10e-18
Identity = 43/56 (76.79%), Postives = 46/56 (82.14%), Query Frame = 0

Query: 34 VFGKDRATGACAETFADIGSNVPTDNDSVPIEDDIDMEFPAMYSLRMNMSPEDMMG 89
          VFGKDRATG  AETF DI SNVPTDND VP EDD+D +F A+ S RMNMSPEDMMG
Sbjct: 23 VFGKDRATGDRAETFEDIASNVPTDNDRVPAEDDMDTKFLAICSPRMNMSPEDMMG 78

BLAST of IVF0021128 vs. NCBI nr
Match: TYJ98397.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 2.26e-18
Identity = 43/61 (70.49%), Postives = 48/61 (78.69%), Query Frame = 0

Query: 31 IIVVFGKDRATGACAETFADIGSNVPTDNDSVPIEDDIDMEFPAMYSLRMNMSPEDMMGG 90
          ++ VF KDRATG  A+TFADI  NVP DNDSVP+ED IDMEF AM S RMN+S E MMGG
Sbjct: 26 LLYVFRKDRATGTRAKTFADIDLNVPADNDSVPVEDGIDMEFLAMSSSRMNLSSEGMMGG 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T0693.9e-31100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BUJ44.2e-1782.76Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VAC34.2e-1782.76Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UA621.3e-1376.79Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UI551.6e-1377.78Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0034865.14.31e-39100.00retrotransposon protein [Cucumis melo var. makuwa] >TYK27334.1 retrotransposon p... [more]
TYK02844.12.06e-2282.76retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0064184.11.51e-2182.76retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0050379.11.10e-1876.79retrotransposon protein [Cucumis melo var. makuwa] >TYK03592.1 retrotransposon p... [more]
TYJ98397.12.26e-1870.49retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0021128.1IVF0021128.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding